Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 303 |
| Acc36I | ACCTGC | 1 cut(s) | 110 |
| AccB1I | GGYRCC | 1 cut(s) | 237 |
| AciI | CCGC | 1 cut(s) | 605 |
| AclI | AACGTT | 1 cut(s) | 260 |
| AclWI | GGATC | 2 cut(s) | 393, 406 |
| AfaI | GTAC | 2 cut(s) | 60, 124 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 633 |
| AflIII | ACRYGT | 1 cut(s) | 34 |
| AgsI | TTSAA | 4 cut(s) | 217, 338, 496, 568 |
| AjnI | CCWGG | 2 cut(s) | 137, 477 |
| AluBI | AGCT | 3 cut(s) | 308, 512, 610 |
| AluI | AGCT | 3 cut(s) | 308, 512, 610 |
| AlwI | GGATC | 2 cut(s) | 393, 406 |
| AoxI | GGCC | 2 cut(s) | 294, 570 |
| ApeKI | GCWGC | 2 cut(s) | 46, 532 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 92, 124 |
| AspLEI | GCGC | 1 cut(s) | 304 |
| AsuC2I | CCSGG | 2 cut(s) | 43, 235 |
| AsuHPI | GGTGA | 1 cut(s) | 127 |
| BamHI | GGATCC | 1 cut(s) | 398 |
| BanI | GGYRCC | 1 cut(s) | 237 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 560, 592 |
| BbsI | GAAGAC | 1 cut(s) | 8 |
| BbvI | GCAGC | 2 cut(s) | 58, 519 |
| BccI | CCATC | 3 cut(s) | 240, 319, 401 |
| BceAI | ACGGC | 1 cut(s) | 281 |
| BciT130I | CCWGG | 2 cut(s) | 139, 479 |
| BcnI | CCSGG | 2 cut(s) | 43, 235 |
| BfaI | CTAG | 1 cut(s) | 273 |
| BfuAI | ACCTGC | 1 cut(s) | 110 |
| BisI | GCNGC | 2 cut(s) | 47, 533 |
| BlsI | GCNGC | 2 cut(s) | 48, 534 |
| Bme1390I | CCNGG | 4 cut(s) | 43, 139, 235, 479 |
| BmiI | GGNNCC | 3 cut(s) | 239, 400, 476 |
| BmrFI | CCNGG | 4 cut(s) | 43, 139, 235, 479 |
| BmsI | GCATC | 3 cut(s) | 354, 376, 632 |
| BpiI | GAAGAC | 1 cut(s) | 8 |
| BpuMI | CCSGG | 2 cut(s) | 43, 235 |
| BsaAI | YACGTR | 1 cut(s) | 633 |
| BsaJI | CCNNGG | 4 cut(s) | 138, 192, 241, 402 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 633 |
| BseBI | CCWGG | 2 cut(s) | 139, 479 |
| BseDI | CCNNGG | 4 cut(s) | 138, 192, 241, 402 |
| BseGI | GGATG | 3 cut(s) | 251, 412, 623 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 633 |
| BseMII | CTCAG | 1 cut(s) | 168 |
| BseRI | GAGGAG | 1 cut(s) | 212 |
| BseXI | GCAGC | 2 cut(s) | 58, 519 |
| BsgI | GTGCAG | 1 cut(s) | 518 |
| BshFI | GGCC | 2 cut(s) | 296, 572 |
| BshNI | GGYRCC | 1 cut(s) | 237 |
| BsiSI | CCGG | 2 cut(s) | 42, 235 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 633 |
| BsnI | GGCC | 2 cut(s) | 296, 572 |
| Bsp1407I | TGTACA | 1 cut(s) | 58 |
| Bsp143I | GATC | 2 cut(s) | 180, 398 |
| BspACI | CCGC | 1 cut(s) | 605 |
| BspANI | GGCC | 2 cut(s) | 296, 572 |
| BspCNI | CTCAG | 1 cut(s) | 169 |
| BspHI | TCATGA | 1 cut(s) | 597 |
| BspLI | GGNNCC | 3 cut(s) | 239, 400, 476 |
| BspMI | ACCTGC | 1 cut(s) | 110 |
| BspPI | GGATC | 2 cut(s) | 393, 406 |
| BspT107I | GGYRCC | 1 cut(s) | 237 |
| BsrGI | TGTACA | 1 cut(s) | 58 |
| BssECI | CCNNGG | 4 cut(s) | 138, 192, 241, 402 |
| BssMI | GATC | 2 cut(s) | 180, 398 |
| BssT1I | CCWWGG | 2 cut(s) | 192, 241 |
| Bst2UI | CCWGG | 2 cut(s) | 139, 479 |
| Bst4CI | ACNGT | 1 cut(s) | 590 |
| BstAUI | TGTACA | 1 cut(s) | 58 |
| BstBAI | YACGTR | 1 cut(s) | 633 |
| BstC8I | GCNNGC | 1 cut(s) | 306 |
| BstDEI | CTNAG | 2 cut(s) | 177, 508 |
| BstEII | GGTNACC | 1 cut(s) | 133 |
| BstF5I | GGATG | 3 cut(s) | 251, 412, 623 |
| BstHHI | GCGC | 1 cut(s) | 304 |
| BstKTI | GATC | 2 cut(s) | 183, 401 |
| BstMBI | GATC | 2 cut(s) | 180, 398 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 509 |
| BstNI | CCWGG | 2 cut(s) | 139, 479 |
| BstPI | GGTNACC | 1 cut(s) | 133 |
| BstSCI | CCNGG | 4 cut(s) | 41, 137, 233, 477 |
| BstV1I | GCAGC | 2 cut(s) | 58, 519 |
| BstV2I | GAAGAC | 1 cut(s) | 8 |
| BstX2I | RGATCY | 1 cut(s) | 398 |
| BstYI | RGATCY | 1 cut(s) | 398 |
| BsuRI | GGCC | 2 cut(s) | 296, 572 |
| BtsCI | GGATG | 3 cut(s) | 251, 412, 623 |
| BtsI | GCAGTG | 1 cut(s) | 552 |
| BtsIMutI | CAGTG | 1 cut(s) | 552 |
| BveI | ACCTGC | 1 cut(s) | 110 |
| Cac8I | GCNNGC | 1 cut(s) | 306 |
| CciI | TCATGA | 1 cut(s) | 597 |
| CfoI | GCGC | 1 cut(s) | 304 |
| Csp6I | GTAC | 2 cut(s) | 59, 123 |
| CviAII | CATG | 4 cut(s) | 152, 376, 432, 598 |
| CviJI | RGCY | 7 cut(s) | 203, 296, 308, 503, 512, 572, 610 |
| CviKI_1 | RGCY | 7 cut(s) | 203, 296, 308, 503, 512, 572, 610 |
| CviQI | GTAC | 2 cut(s) | 59, 123 |
| DdeI | CTNAG | 2 cut(s) | 177, 508 |
| DpnI | GATC | 2 cut(s) | 182, 400 |
| DpnII | GATC | 2 cut(s) | 180, 398 |
| EciI | GGCGGA | 1 cut(s) | 620 |
| Eco130I | CCWWGG | 2 cut(s) | 192, 241 |
| Eco91I | GGTNACC | 1 cut(s) | 133 |
| EcoO65I | GGTNACC | 1 cut(s) | 133 |
| EcoRII | CCWGG | 2 cut(s) | 137, 477 |
| EcoT14I | CCWWGG | 2 cut(s) | 192, 241 |
| EcoT22I | ATGCAT | 2 cut(s) | 369, 489 |
| ErhI | CCWWGG | 2 cut(s) | 192, 241 |
| FaeI | CATG | 4 cut(s) | 155, 379, 435, 601 |
| FatI | CATG | 4 cut(s) | 151, 375, 431, 597 |
| Fnu4HI | GCNGC | 2 cut(s) | 47, 533 |
| FokI | GGATG | 3 cut(s) | 258, 419, 610 |
| Fsp4HI | GCNGC | 2 cut(s) | 47, 533 |
| FspBI | CTAG | 1 cut(s) | 273 |
| FspI | TGCGCA | 1 cut(s) | 303 |
| GlaI | GCGC | 1 cut(s) | 303 |
| GluI | GCNGC | 2 cut(s) | 47, 533 |
| HaeIII | GGCC | 2 cut(s) | 296, 572 |
| HapII | CCGG | 2 cut(s) | 42, 235 |
| HhaI | GCGC | 1 cut(s) | 304 |
| Hin1II | CATG | 4 cut(s) | 155, 379, 435, 601 |
| Hin6I | GCGC | 1 cut(s) | 302 |
| HinP1I | GCGC | 1 cut(s) | 302 |
| HinfI | GANTC | 1 cut(s) | 545 |
| HpaII | CCGG | 2 cut(s) | 42, 235 |
| HphI | GGTGA | 1 cut(s) | 127 |
| Hpy166II | GTNNAC | 1 cut(s) | 552 |
| Hpy188I | TCNGA | 2 cut(s) | 345, 403 |
| Hpy188III | TCNNGA | 2 cut(s) | 214, 598 |
| Hpy8I | GTNNAC | 1 cut(s) | 552 |
| HpyAV | CCTTC | 3 cut(s) | 324, 562, 595 |
| HpyCH4III | ACNGT | 1 cut(s) | 590 |
| HpyCH4IV | ACGT | 3 cut(s) | 34, 260, 632 |
| HpyCH4V | TGCA | 7 cut(s) | 22, 95, 367, 487, 535, 557, 623 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 509 |
| HpyF3I | CTNAG | 2 cut(s) | 177, 508 |
| HpySE526I | ACGT | 3 cut(s) | 34, 260, 632 |
| Hsp92II | CATG | 4 cut(s) | 155, 379, 435, 601 |
| HspAI | GCGC | 1 cut(s) | 302 |
| Kzo9I | GATC | 2 cut(s) | 180, 398 |
| LmnI | GCTCC | 1 cut(s) | 607 |
| LpnPI | CCDG | 9 cut(s) | 55, 105, 124, 151, 248, 397, 464, 491, 555 |
| Lsp1109I | GCAGC | 2 cut(s) | 58, 519 |
| LweI | GCATC | 3 cut(s) | 354, 376, 632 |
| MaeI | CTAG | 1 cut(s) | 273 |
| MaeII | ACGT | 3 cut(s) | 34, 260, 632 |
| MaeIII | GTNAC | 1 cut(s) | 133 |
| MalI | GATC | 2 cut(s) | 182, 400 |
| MboI | GATC | 2 cut(s) | 180, 398 |
| MboII | GAAGA | 2 cut(s) | 8, 235 |
| MfeI | CAATTG | 1 cut(s) | 440 |
| MflI | RGATCY | 1 cut(s) | 398 |
| MluCI | AATT | 3 cut(s) | 440, 455, 496 |
| MlyI | GAGTC | 1 cut(s) | 554 |
| MnlI | CCTC | 7 cut(s) | 106, 190, 193, 397, 454, 458, 519 |
| Mph1103I | ATGCAT | 2 cut(s) | 369, 489 |
| MseI | TTAA | 1 cut(s) | 54 |
| MslI | CAYNNNNRTG | 1 cut(s) | 388 |
| MspI | CCGG | 2 cut(s) | 42, 235 |
| MspR9I | CCNGG | 4 cut(s) | 43, 139, 235, 479 |
| MunI | CAATTG | 1 cut(s) | 440 |
| MvaI | CCWGG | 2 cut(s) | 139, 479 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 509 |
| NciI | CCSGG | 2 cut(s) | 43, 235 |
| NdeII | GATC | 2 cut(s) | 180, 398 |
| NlaIII | CATG | 4 cut(s) | 155, 379, 435, 601 |
| NlaIV | GGNNCC | 3 cut(s) | 239, 400, 476 |
| NmuCI | GTSAC | 1 cut(s) | 133 |
| NsbI | TGCGCA | 1 cut(s) | 303 |
| NsiI | ATGCAT | 2 cut(s) | 369, 489 |
| PagI | TCATGA | 1 cut(s) | 597 |
| PfoI | TCCNGGA | 1 cut(s) | 477 |
| PkrI | GCNGC | 2 cut(s) | 48, 534 |
| PleI | GAGTC | 1 cut(s) | 553 |
| PpsI | GAGTC | 1 cut(s) | 553 |
| Ppu21I | YACGTR | 1 cut(s) | 633 |
| Psp1406I | AACGTT | 1 cut(s) | 260 |
| Psp6I | CCWGG | 2 cut(s) | 137, 477 |
| PspEI | GGTNACC | 1 cut(s) | 133 |
| PspGI | CCWGG | 2 cut(s) | 137, 477 |
| PspN4I | GGNNCC | 3 cut(s) | 239, 400, 476 |
| PsuI | RGATCY | 1 cut(s) | 398 |
| RsaI | GTAC | 2 cut(s) | 60, 124 |
| RsaNI | GTAC | 2 cut(s) | 59, 123 |
| RseI | CAYNNNNRTG | 1 cut(s) | 388 |
| SaqAI | TTAA | 1 cut(s) | 54 |
| SatI | GCNGC | 2 cut(s) | 47, 533 |
| Sau3AI | GATC | 2 cut(s) | 180, 398 |
| SchI | GAGTC | 1 cut(s) | 554 |
| ScrFI | CCNGG | 4 cut(s) | 43, 139, 235, 479 |
| SfaNI | GCATC | 3 cut(s) | 354, 376, 632 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 388 |
| Sse9I | AATT | 3 cut(s) | 440, 455, 496 |
| SsiI | CCGC | 1 cut(s) | 605 |
| SspMI | CTAG | 1 cut(s) | 273 |
| StyD4I | CCNGG | 4 cut(s) | 41, 137, 233, 477 |
| StyI | CCWWGG | 2 cut(s) | 192, 241 |
| TaaI | ACNGT | 1 cut(s) | 590 |
| TaiI | ACGT | 3 cut(s) | 37, 263, 635 |
| TasI | AATT | 3 cut(s) | 440, 455, 496 |
| TatI | WGTACW | 1 cut(s) | 58 |
| Tru1I | TTAA | 1 cut(s) | 54 |
| Tru9I | TTAA | 1 cut(s) | 54 |
| TscAI | CASTG | 1 cut(s) | 559 |
| TseFI | GTSAC | 1 cut(s) | 133 |
| TseI | GCWGC | 2 cut(s) | 46, 532 |
| Tsp45I | GTSAC | 1 cut(s) | 133 |
| TspDTI | ATGAA | 3 cut(s) | 45, 586, 614 |
| TspRI | CASTG | 1 cut(s) | 559 |
| XspI | CTAG | 1 cut(s) | 273 |
| Zsp2I | ATGCAT | 2 cut(s) | 369, 489 |