Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 19 - 97 | 2.9e-11 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 38 |
| AccBSI | CCGCTC | 1 cut(s) | 203 |
| AciI | CCGC | 2 cut(s) | 203, 276 |
| AclWI | GGATC | 1 cut(s) | 306 |
| AdeI | CACNNNGTG | 1 cut(s) | 38 |
| AfaI | GTAC | 2 cut(s) | 159, 320 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 38 |
| AflIII | ACRYGT | 1 cut(s) | 17 |
| AluBI | AGCT | 3 cut(s) | 140, 146, 173 |
| AluI | AGCT | 3 cut(s) | 140, 146, 173 |
| AlwI | GGATC | 1 cut(s) | 306 |
| ApeKI | GCWGC | 1 cut(s) | 137 |
| AseI | ATTAAT | 1 cut(s) | 269 |
| AsuHPI | GGTGA | 2 cut(s) | 215, 305 |
| BbvI | GCAGC | 1 cut(s) | 149 |
| BccI | CCATC | 1 cut(s) | 56 |
| BfaI | CTAG | 2 cut(s) | 147, 322 |
| BfmI | CTRYAG | 1 cut(s) | 141 |
| BisI | GCNGC | 1 cut(s) | 138 |
| BlsI | GCNGC | 1 cut(s) | 139 |
| BsaJI | CCNNGG | 1 cut(s) | 226 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 38 |
| BseDI | CCNNGG | 1 cut(s) | 226 |
| BseGI | GGATG | 1 cut(s) | 244 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 38 |
| BseMII | CTCAG | 1 cut(s) | 183 |
| BseRI | GAGGAG | 1 cut(s) | 303 |
| BseXI | GCAGC | 1 cut(s) | 149 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 38 |
| BsmI | GAATGC | 1 cut(s) | 32 |
| Bsp1407I | TGTACA | 1 cut(s) | 157 |
| Bsp143I | GATC | 1 cut(s) | 298 |
| BspACI | CCGC | 2 cut(s) | 203, 276 |
| BspCNI | CTCAG | 1 cut(s) | 182 |
| BspPI | GGATC | 1 cut(s) | 306 |
| BsrBI | CCGCTC | 1 cut(s) | 203 |
| BsrGI | TGTACA | 1 cut(s) | 157 |
| BssECI | CCNNGG | 1 cut(s) | 226 |
| BssMI | GATC | 1 cut(s) | 298 |
| BssT1I | CCWWGG | 1 cut(s) | 226 |
| Bst4CI | ACNGT | 1 cut(s) | 153 |
| BstAUI | TGTACA | 1 cut(s) | 157 |
| BstDEI | CTNAG | 1 cut(s) | 169 |
| BstF5I | GGATG | 1 cut(s) | 244 |
| BstKTI | GATC | 1 cut(s) | 301 |
| BstMBI | GATC | 1 cut(s) | 298 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 143, 170, 200 |
| BstNSI | RCATGY | 2 cut(s) | 164, 198 |
| BstSFI | CTRYAG | 1 cut(s) | 141 |
| BstV1I | GCAGC | 1 cut(s) | 149 |
| BstX2I | RGATCY | 1 cut(s) | 298 |
| BstYI | RGATCY | 1 cut(s) | 298 |
| BtsCI | GGATG | 1 cut(s) | 244 |
| BtsI | GCAGTG | 1 cut(s) | 18 |
| BtsIMutI | CAGTG | 1 cut(s) | 18 |
| Csp6I | GTAC | 2 cut(s) | 158, 319 |
| CviAII | CATG | 3 cut(s) | 74, 161, 195 |
| CviJI | RGCY | 5 cut(s) | 46, 68, 140, 146, 173 |
| CviKI_1 | RGCY | 5 cut(s) | 46, 68, 140, 146, 173 |
| CviQI | GTAC | 2 cut(s) | 158, 319 |
| DdeI | CTNAG | 1 cut(s) | 169 |
| DpnI | GATC | 1 cut(s) | 300 |
| DpnII | GATC | 1 cut(s) | 298 |
| DraI | TTTAAA | 1 cut(s) | 177 |
| DraIII | CACNNNGTG | 1 cut(s) | 38 |
| Eco130I | CCWWGG | 1 cut(s) | 226 |
| EcoT14I | CCWWGG | 1 cut(s) | 226 |
| ErhI | CCWWGG | 1 cut(s) | 226 |
| FaeI | CATG | 3 cut(s) | 77, 164, 198 |
| FaiI | YATR | 5 cut(s) | 75, 143, 162, 182, 196 |
| FatI | CATG | 3 cut(s) | 73, 160, 194 |
| FauI | CCCGC | 1 cut(s) | 196 |
| Fnu4HI | GCNGC | 1 cut(s) | 138 |
| FokI | GGATG | 1 cut(s) | 251 |
| Fsp4HI | GCNGC | 1 cut(s) | 138 |
| FspBI | CTAG | 2 cut(s) | 147, 322 |
| GluI | GCNGC | 1 cut(s) | 138 |
| Hin1II | CATG | 3 cut(s) | 77, 164, 198 |
| HinfI | GANTC | 2 cut(s) | 132, 257 |
| HphI | GGTGA | 2 cut(s) | 215, 305 |
| Hpy188I | TCNGA | 1 cut(s) | 82 |
| HpyCH4III | ACNGT | 1 cut(s) | 153 |
| HpyCH4IV | ACGT | 1 cut(s) | 19 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 143, 170, 200 |
| HpyF3I | CTNAG | 1 cut(s) | 169 |
| HpySE526I | ACGT | 1 cut(s) | 19 |
| Hsp92II | CATG | 3 cut(s) | 77, 164, 198 |
| Kzo9I | GATC | 1 cut(s) | 298 |
| Lsp1109I | GCAGC | 1 cut(s) | 149 |
| MaeI | CTAG | 2 cut(s) | 147, 322 |
| MaeII | ACGT | 1 cut(s) | 19 |
| MaeIII | GTNAC | 2 cut(s) | 13, 210 |
| MalI | GATC | 1 cut(s) | 300 |
| MbiI | CCGCTC | 1 cut(s) | 203 |
| MboI | GATC | 1 cut(s) | 298 |
| MboII | GAAGA | 1 cut(s) | 16 |
| MflI | RGATCY | 1 cut(s) | 298 |
| MluCI | AATT | 1 cut(s) | 270 |
| MmeI | TCCRAC | 1 cut(s) | 212 |
| MnlI | CCTC | 8 cut(s) | 36, 115, 178, 184, 281, 284, 289, 300 |
| MseI | TTAA | 2 cut(s) | 176, 269 |
| MslI | CAYNNNNRTG | 1 cut(s) | 101 |
| Mva1269I | GAATGC | 1 cut(s) | 32 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 143, 170, 200 |
| NdeII | GATC | 1 cut(s) | 298 |
| NlaIII | CATG | 3 cut(s) | 77, 164, 198 |
| NmuCI | GTSAC | 1 cut(s) | 13 |
| NspI | RCATGY | 2 cut(s) | 164, 198 |
| PctI | GAATGC | 1 cut(s) | 32 |
| PfeI | GAWTC | 2 cut(s) | 132, 257 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 38 |
| PkrI | GCNGC | 1 cut(s) | 139 |
| PshBI | ATTAAT | 1 cut(s) | 269 |
| PsuI | RGATCY | 1 cut(s) | 298 |
| RsaI | GTAC | 2 cut(s) | 159, 320 |
| RsaNI | GTAC | 2 cut(s) | 158, 319 |
| RseI | CAYNNNNRTG | 1 cut(s) | 101 |
| SaqAI | TTAA | 2 cut(s) | 176, 269 |
| SatI | GCNGC | 1 cut(s) | 138 |
| Sau3AI | GATC | 1 cut(s) | 298 |
| SetI | ASST | 8 cut(s) | 22, 142, 148, 175, 189, 232, 295, 311 |
| SfcI | CTRYAG | 1 cut(s) | 141 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 101 |
| Sse9I | AATT | 1 cut(s) | 270 |
| SsiI | CCGC | 2 cut(s) | 203, 276 |
| SspI | AATATT | 1 cut(s) | 58 |
| SspMI | CTAG | 2 cut(s) | 147, 322 |
| StyI | CCWWGG | 1 cut(s) | 226 |
| TaaI | ACNGT | 1 cut(s) | 153 |
| TaiI | ACGT | 1 cut(s) | 22 |
| TaqI | TCGA | 1 cut(s) | 305 |
| TasI | AATT | 1 cut(s) | 270 |
| TatI | WGTACW | 1 cut(s) | 157 |
| TfiI | GAWTC | 2 cut(s) | 132, 257 |
| Tru1I | TTAA | 2 cut(s) | 176, 269 |
| Tru9I | TTAA | 2 cut(s) | 176, 269 |
| TscAI | CASTG | 1 cut(s) | 18 |
| TseFI | GTSAC | 1 cut(s) | 13 |
| TseI | GCWGC | 1 cut(s) | 137 |
| Tsp45I | GTSAC | 1 cut(s) | 13 |
| TspDTI | ATGAA | 2 cut(s) | 17, 62 |
| TspGWI | ACGGA | 1 cut(s) | 251 |
| TspRI | CASTG | 1 cut(s) | 18 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 38 |
| VspI | ATTAAT | 1 cut(s) | 269 |
| XceI | RCATGY | 2 cut(s) | 164, 198 |
| XspI | CTAG | 2 cut(s) | 147, 322 |