Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 8 - 98 | 2.6e-15 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 82 |
| AciI | CCGC | 1 cut(s) | 62 |
| AcsI | RAATTY | 1 cut(s) | 172 |
| AfaI | GTAC | 1 cut(s) | 33 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 106 |
| AgsI | TTSAA | 2 cut(s) | 125, 239 |
| AluBI | AGCT | 1 cut(s) | 77 |
| AluI | AGCT | 1 cut(s) | 77 |
| Alw26I | GTCTC | 1 cut(s) | 326 |
| ApeKI | GCWGC | 2 cut(s) | 11, 149 |
| ApoI | RAATTY | 1 cut(s) | 172 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 173 |
| AsuHPI | GGTGA | 1 cut(s) | 89 |
| BbvI | GCAGC | 1 cut(s) | 136 |
| BccI | CCATC | 1 cut(s) | 146 |
| BcoDI | GTCTC | 1 cut(s) | 326 |
| BfaI | CTAG | 2 cut(s) | 21, 297 |
| BisI | GCNGC | 2 cut(s) | 12, 150 |
| BlsI | GCNGC | 2 cut(s) | 13, 151 |
| BpuEI | CTTGAG | 1 cut(s) | 140 |
| BsaJI | CCNNGG | 1 cut(s) | 100 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 106 |
| BseDI | CCNNGG | 1 cut(s) | 100 |
| BseGI | GGATG | 2 cut(s) | 138, 205 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 106 |
| BseXI | GCAGC | 1 cut(s) | 136 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 106 |
| BsmAI | GTCTC | 1 cut(s) | 326 |
| Bsp1407I | TGTACA | 1 cut(s) | 31 |
| BspACI | CCGC | 1 cut(s) | 62 |
| BspHI | TCATGA | 1 cut(s) | 256 |
| BsrGI | TGTACA | 1 cut(s) | 31 |
| BssECI | CCNNGG | 1 cut(s) | 100 |
| BssT1I | CCWWGG | 1 cut(s) | 100 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 293 |
| BstAUI | TGTACA | 1 cut(s) | 31 |
| BstC8I | GCNNGC | 1 cut(s) | 285 |
| BstF5I | GGATG | 2 cut(s) | 138, 205 |
| BstMAI | GTCTC | 1 cut(s) | 326 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 17, 293 |
| BstNSI | RCATGY | 1 cut(s) | 38 |
| BstV1I | GCAGC | 1 cut(s) | 136 |
| BtsCI | GGATG | 2 cut(s) | 138, 205 |
| Cac8I | GCNNGC | 1 cut(s) | 285 |
| CciI | TCATGA | 1 cut(s) | 256 |
| Csp6I | GTAC | 1 cut(s) | 32 |
| CviAII | CATG | 2 cut(s) | 35, 257 |
| CviJI | RGCY | 4 cut(s) | 20, 77, 110, 283 |
| CviKI_1 | RGCY | 4 cut(s) | 20, 77, 110, 283 |
| CviQI | GTAC | 1 cut(s) | 32 |
| Eco130I | CCWWGG | 1 cut(s) | 100 |
| EcoT14I | CCWWGG | 1 cut(s) | 100 |
| ErhI | CCWWGG | 1 cut(s) | 100 |
| FaeI | CATG | 2 cut(s) | 38, 260 |
| FaiI | YATR | 6 cut(s) | 36, 56, 249, 258, 347, 349 |
| FatI | CATG | 2 cut(s) | 34, 256 |
| FblI | GTMKAC | 1 cut(s) | 82 |
| Fnu4HI | GCNGC | 2 cut(s) | 12, 150 |
| FokI | GGATG | 2 cut(s) | 125, 212 |
| Fsp4HI | GCNGC | 2 cut(s) | 12, 150 |
| FspBI | CTAG | 2 cut(s) | 21, 297 |
| GluI | GCNGC | 2 cut(s) | 12, 150 |
| Hin1II | CATG | 2 cut(s) | 38, 260 |
| HincII | GTYRAC | 1 cut(s) | 118 |
| HindII | GTYRAC | 1 cut(s) | 118 |
| HinfI | GANTC | 1 cut(s) | 131 |
| HphI | GGTGA | 1 cut(s) | 89 |
| Hpy166II | GTNNAC | 2 cut(s) | 83, 118 |
| Hpy188I | TCNGA | 2 cut(s) | 51, 245 |
| Hpy188III | TCNNGA | 3 cut(s) | 142, 157, 257 |
| Hpy8I | GTNNAC | 2 cut(s) | 83, 118 |
| HpyCH4IV | ACGT | 1 cut(s) | 114 |
| HpyCH4V | TGCA | 3 cut(s) | 38, 275, 287 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 17, 293 |
| HpySE526I | ACGT | 1 cut(s) | 114 |
| Hsp92II | CATG | 2 cut(s) | 38, 260 |
| LpnPI | CCDG | 2 cut(s) | 63, 155 |
| Lsp1109I | GCAGC | 1 cut(s) | 136 |
| MaeI | CTAG | 2 cut(s) | 21, 297 |
| MaeII | ACGT | 1 cut(s) | 114 |
| MboII | GAAGA | 1 cut(s) | 181 |
| MluCI | AATT | 1 cut(s) | 172 |
| MlyI | GAGTC | 1 cut(s) | 125 |
| MmeI | TCCRAC | 1 cut(s) | 268 |
| MnlI | CCTC | 1 cut(s) | 58 |
| MroXI | GAANNNNTTC | 1 cut(s) | 173 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 17, 293 |
| NlaIII | CATG | 2 cut(s) | 38, 260 |
| NspI | RCATGY | 1 cut(s) | 38 |
| PagI | TCATGA | 1 cut(s) | 256 |
| PdmI | GAANNNNTTC | 1 cut(s) | 173 |
| PkrI | GCNGC | 2 cut(s) | 13, 151 |
| PleI | GAGTC | 1 cut(s) | 125 |
| PpsI | GAGTC | 1 cut(s) | 125 |
| RsaI | GTAC | 1 cut(s) | 33 |
| RsaNI | GTAC | 1 cut(s) | 32 |
| SatI | GCNGC | 2 cut(s) | 12, 150 |
| SchI | GAGTC | 1 cut(s) | 125 |
| SetI | ASST | 6 cut(s) | 28, 69, 79, 106, 117, 186 |
| SmlI | CTYRAG | 1 cut(s) | 155 |
| SmoI | CTYRAG | 1 cut(s) | 155 |
| Sse9I | AATT | 1 cut(s) | 172 |
| SsiI | CCGC | 1 cut(s) | 62 |
| SspMI | CTAG | 2 cut(s) | 21, 297 |
| StyI | CCWWGG | 1 cut(s) | 100 |
| TaiI | ACGT | 1 cut(s) | 117 |
| TasI | AATT | 1 cut(s) | 172 |
| TatI | WGTACW | 1 cut(s) | 31 |
| TseI | GCWGC | 2 cut(s) | 11, 149 |
| TspDTI | ATGAA | 1 cut(s) | 273 |
| XapI | RAATTY | 1 cut(s) | 172 |
| XceI | RCATGY | 1 cut(s) | 38 |
| XmiI | GTMKAC | 1 cut(s) | 82 |
| XmnI | GAANNNNTTC | 1 cut(s) | 173 |
| XspI | CTAG | 2 cut(s) | 21, 297 |