ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 417 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 764 |
| AciI | CCGC | 1 cut(s) | 929 |
| AclWI | GGATC | 1 cut(s) | 402 |
| AcoI | YGGCCR | 1 cut(s) | 543 |
| AcuI | CTGAAG | 1 cut(s) | 33 |
| AdeI | CACNNNGTG | 1 cut(s) | 764 |
| AfaI | GTAC | 5 cut(s) | 10, 278, 661, 695, 721 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 729, 764, 907 |
| AgsI | TTSAA | 6 cut(s) | 47, 80, 448, 481, 525, 884 |
| AjnI | CCWGG | 1 cut(s) | 266 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 473, 505 |
| AluBI | AGCT | 4 cut(s) | 218, 337, 518, 847 |
| AluI | AGCT | 4 cut(s) | 218, 337, 518, 847 |
| Alw21I | GWGCWC | 2 cut(s) | 139, 513 |
| AlwI | GGATC | 1 cut(s) | 402 |
| AoxI | GGCC | 4 cut(s) | 543, 734, 897, 931 |
| ApeKI | GCWGC | 1 cut(s) | 863 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 569, 601 |
| AspS9I | GGNCC | 2 cut(s) | 898, 931 |
| AsuHPI | GGTGA | 1 cut(s) | 199 |
| BalI | TGGCCA | 1 cut(s) | 545 |
| BauI | CACGAG | 1 cut(s) | 837 |
| Bbv12I | GWGCWC | 2 cut(s) | 139, 513 |
| BbvI | GCAGC | 1 cut(s) | 850 |
| BccI | CCATC | 2 cut(s) | 544, 782 |
| BciT130I | CCWGG | 1 cut(s) | 268 |
| BciVI | GTATCC | 1 cut(s) | 547 |
| BfaI | CTAG | 3 cut(s) | 140, 210, 762 |
| BfuI | GTATCC | 1 cut(s) | 547 |
| BisI | GCNGC | 1 cut(s) | 864 |
| BlsI | GCNGC | 1 cut(s) | 865 |
| BmcAI | AGTACT | 1 cut(s) | 278 |
| Bme1390I | CCNGG | 1 cut(s) | 268 |
| BmgT120I | GGNCC | 2 cut(s) | 898, 931 |
| BmiI | GGNNCC | 2 cut(s) | 468, 755 |
| BmrFI | CCNGG | 1 cut(s) | 268 |
| BmsI | GCATC | 1 cut(s) | 254 |
| BpuEI | CTTGAG | 1 cut(s) | 545 |
| BsaJI | CCNNGG | 3 cut(s) | 267, 737, 894 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 419, 449 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 729, 764, 907 |
| Bse118I | RCCGGY | 1 cut(s) | 257 |
| Bse1I | ACTGG | 2 cut(s) | 222, 284 |
| Bse3DI | GCAATG | 1 cut(s) | 494 |
| BseBI | CCWGG | 1 cut(s) | 268 |
| BseDI | CCNNGG | 3 cut(s) | 267, 737, 894 |
| BseGI | GGATG | 3 cut(s) | 73, 245, 436 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 729, 764, 907 |
| BseMI | GCAATG | 1 cut(s) | 494 |
| BseMII | CTCAG | 1 cut(s) | 498 |
| BseNI | ACTGG | 2 cut(s) | 222, 284 |
| BseRI | GAGGAG | 2 cut(s) | 704, 745 |
| BseXI | GCAGC | 1 cut(s) | 850 |
| BseYI | CCCAGC | 2 cut(s) | 514, 847 |
| BshFI | GGCC | 4 cut(s) | 545, 736, 899, 933 |
| BsiHKAI | GWGCWC | 2 cut(s) | 139, 513 |
| BsiSI | CCGG | 2 cut(s) | 258, 364 |
| BslFI | GGGAC | 2 cut(s) | 338, 590 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 729, 764, 907 |
| BsmFI | GGGAC | 2 cut(s) | 338, 590 |
| BsnI | GGCC | 4 cut(s) | 545, 736, 899, 933 |
| Bsp1286I | GDGCHC | 2 cut(s) | 139, 513 |
| Bsp143I | GATC | 2 cut(s) | 394, 613 |
| BspACI | CCGC | 1 cut(s) | 929 |
| BspANI | GGCC | 4 cut(s) | 545, 736, 899, 933 |
| BspCNI | CTCAG | 1 cut(s) | 499 |
| BspLI | GGNNCC | 2 cut(s) | 468, 755 |
| BspPI | GGATC | 1 cut(s) | 402 |
| BsrDI | GCAATG | 1 cut(s) | 494 |
| BsrFI | RCCGGY | 1 cut(s) | 257 |
| BsrI | ACTGG | 2 cut(s) | 222, 284 |
| BssAI | RCCGGY | 1 cut(s) | 257 |
| BssECI | CCNNGG | 3 cut(s) | 267, 737, 894 |
| BssMI | GATC | 2 cut(s) | 394, 613 |
| BssSI | CACGAG | 1 cut(s) | 837 |
| BssT1I | CCWWGG | 1 cut(s) | 894 |
| Bst2BI | CACGAG | 1 cut(s) | 837 |
| Bst2UI | CCWGG | 1 cut(s) | 268 |
| Bst4CI | ACNGT | 4 cut(s) | 187, 485, 664, 710 |
| Bst6I | CTCTTC | 2 cut(s) | 185, 278 |
| BstC8I | GCNNGC | 2 cut(s) | 259, 931 |
| BstDEI | CTNAG | 2 cut(s) | 507, 923 |
| BstDSI | CCRYGG | 1 cut(s) | 737 |
| BstF5I | GGATG | 3 cut(s) | 73, 245, 436 |
| BstKTI | GATC | 2 cut(s) | 397, 616 |
| BstMBI | GATC | 2 cut(s) | 394, 613 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 157, 215, 869, 926 |
| BstNI | CCWGG | 1 cut(s) | 268 |
| BstSCI | CCNGG | 1 cut(s) | 266 |
| BstV1I | GCAGC | 1 cut(s) | 850 |
| BstX2I | RGATCY | 1 cut(s) | 394 |
| BstYI | RGATCY | 1 cut(s) | 394 |
| BsuI | GTATCC | 1 cut(s) | 547 |
| BsuRI | GGCC | 4 cut(s) | 545, 736, 899, 933 |
| BtgI | CCRYGG | 1 cut(s) | 737 |
| BtsCI | GGATG | 3 cut(s) | 73, 245, 436 |
| BtsIMutI | CAGTG | 1 cut(s) | 752 |
| Cac8I | GCNNGC | 2 cut(s) | 259, 931 |
| Cfr10I | RCCGGY | 1 cut(s) | 257 |
| Cfr13I | GGNCC | 2 cut(s) | 898, 931 |
| Csp6I | GTAC | 5 cut(s) | 9, 277, 660, 694, 720 |
| CviAII | CATG | 5 cut(s) | 53, 203, 230, 547, 654 |
| CviQI | GTAC | 5 cut(s) | 9, 277, 660, 694, 720 |
| DdeI | CTNAG | 2 cut(s) | 507, 923 |
| DpnI | GATC | 2 cut(s) | 396, 615 |
| DpnII | GATC | 2 cut(s) | 394, 613 |
| DraIII | CACNNNGTG | 1 cut(s) | 764 |
| EaeI | YGGCCR | 1 cut(s) | 543 |
| Eam1104I | CTCTTC | 2 cut(s) | 185, 278 |
| EarI | CTCTTC | 2 cut(s) | 185, 278 |
| Eco130I | CCWWGG | 1 cut(s) | 894 |
| Eco57I | CTGAAG | 1 cut(s) | 33 |
| EcoRII | CCWGG | 1 cut(s) | 266 |
| EcoT14I | CCWWGG | 1 cut(s) | 894 |
| ErhI | CCWWGG | 1 cut(s) | 894 |
| FaeI | CATG | 5 cut(s) | 56, 206, 233, 550, 657 |
| FaqI | GGGAC | 2 cut(s) | 338, 590 |
| FatI | CATG | 5 cut(s) | 52, 202, 229, 546, 653 |
| FauI | CCCGC | 1 cut(s) | 922 |
| FauNDI | CATATG | 1 cut(s) | 423 |
| Fnu4HI | GCNGC | 1 cut(s) | 864 |
| FokI | GGATG | 3 cut(s) | 80, 232, 443 |
| Fsp4HI | GCNGC | 1 cut(s) | 864 |
| FspBI | CTAG | 3 cut(s) | 140, 210, 762 |
| GluI | GCNGC | 1 cut(s) | 864 |
| GsaI | CCCAGC | 2 cut(s) | 518, 851 |
| HaeIII | GGCC | 4 cut(s) | 545, 736, 899, 933 |
| HapII | CCGG | 2 cut(s) | 258, 364 |
| Hin1II | CATG | 5 cut(s) | 56, 206, 233, 550, 657 |
| HindIII | AAGCTT | 1 cut(s) | 335 |
| HinfI | GANTC | 3 cut(s) | 47, 235, 367 |
| HpaII | CCGG | 2 cut(s) | 258, 364 |
| HphI | GGTGA | 1 cut(s) | 199 |
| Hpy166II | GTNNAC | 2 cut(s) | 227, 706 |
| Hpy188I | TCNGA | 4 cut(s) | 91, 171, 333, 508 |
| Hpy188III | TCNNGA | 4 cut(s) | 25, 140, 448, 839 |
| Hpy8I | GTNNAC | 2 cut(s) | 227, 706 |
| HpyAV | CCTTC | 3 cut(s) | 166, 628, 944 |
| HpyCH4III | ACNGT | 4 cut(s) | 187, 485, 664, 710 |
| HpyCH4V | TGCA | 2 cut(s) | 400, 439 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 157, 215, 869, 926 |
| HpyF3I | CTNAG | 2 cut(s) | 507, 923 |
| Hsp92II | CATG | 5 cut(s) | 56, 206, 233, 550, 657 |
| KroI | GCCGGC | 1 cut(s) | 257 |
| KroNI | GCCGGC | 1 cut(s) | 259 |
| Kzo9I | GATC | 2 cut(s) | 394, 613 |
| LmnI | GCTCC | 1 cut(s) | 472 |
| Lsp1109I | GCAGC | 1 cut(s) | 850 |
| LweI | GCATC | 1 cut(s) | 254 |
| MaeI | CTAG | 3 cut(s) | 140, 210, 762 |
| MaeIII | GTNAC | 1 cut(s) | 617 |
| MalI | GATC | 2 cut(s) | 396, 615 |
| MboI | GATC | 2 cut(s) | 394, 613 |
| MboII | GAAGA | 4 cut(s) | 26, 155, 202, 295 |
| MfeI | CAATTG | 1 cut(s) | 525 |
| MflI | RGATCY | 1 cut(s) | 394 |
| MhlI | GDGCHC | 2 cut(s) | 139, 513 |
| MlsI | TGGCCA | 1 cut(s) | 545 |
| MluCI | AATT | 5 cut(s) | 36, 80, 105, 525, 649 |
| MluNI | TGGCCA | 1 cut(s) | 545 |
| Mox20I | TGGCCA | 1 cut(s) | 545 |
| MroNI | GCCGGC | 1 cut(s) | 257 |
| MscI | TGGCCA | 1 cut(s) | 545 |
| MseI | TTAA | 4 cut(s) | 35, 62, 375, 648 |
| Msp20I | TGGCCA | 1 cut(s) | 545 |
| MspI | CCGG | 2 cut(s) | 258, 364 |
| MspR9I | CCNGG | 1 cut(s) | 268 |
| MunI | CAATTG | 1 cut(s) | 525 |
| MvaI | CCWGG | 1 cut(s) | 268 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 157, 215, 869, 926 |
| NaeI | GCCGGC | 1 cut(s) | 259 |
| NdeI | CATATG | 1 cut(s) | 423 |
| NdeII | GATC | 2 cut(s) | 394, 613 |
| NgoMIV | GCCGGC | 1 cut(s) | 257 |
| NlaIII | CATG | 5 cut(s) | 56, 206, 233, 550, 657 |
| NlaIV | GGNNCC | 2 cut(s) | 468, 755 |
| PdiI | GCCGGC | 1 cut(s) | 259 |
| PfeI | GAWTC | 3 cut(s) | 47, 235, 367 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 764 |
| PkrI | GCNGC | 1 cut(s) | 865 |
| PsiI | TTATAA | 1 cut(s) | 417 |
| Psp6I | CCWGG | 1 cut(s) | 266 |
| PspFI | CCCAGC | 2 cut(s) | 514, 847 |
| PspGI | CCWGG | 1 cut(s) | 266 |
| PspN4I | GGNNCC | 2 cut(s) | 468, 755 |
| PspPI | GGNCC | 2 cut(s) | 898, 931 |
| PsuI | RGATCY | 1 cut(s) | 394 |
| RsaI | GTAC | 5 cut(s) | 10, 278, 661, 695, 721 |
| RsaNI | GTAC | 5 cut(s) | 9, 277, 660, 694, 720 |
| SaqAI | TTAA | 4 cut(s) | 35, 62, 375, 648 |
| SatI | GCNGC | 1 cut(s) | 864 |
| Sau3AI | GATC | 2 cut(s) | 394, 613 |
| Sau96I | GGNCC | 2 cut(s) | 898, 931 |
| ScaI | AGTACT | 1 cut(s) | 278 |
| ScrFI | CCNGG | 1 cut(s) | 268 |
| SduI | GDGCHC | 2 cut(s) | 139, 513 |
| SfaNI | GCATC | 1 cut(s) | 254 |
| SmlI | CTYRAG | 1 cut(s) | 560 |
| SmoI | CTYRAG | 1 cut(s) | 560 |
| Sse9I | AATT | 5 cut(s) | 36, 80, 105, 525, 649 |
| SsiI | CCGC | 1 cut(s) | 929 |
| SspI | AATATT | 1 cut(s) | 180 |
| SspMI | CTAG | 3 cut(s) | 140, 210, 762 |
| StyD4I | CCNGG | 1 cut(s) | 266 |
| StyI | CCWWGG | 1 cut(s) | 894 |
| TaaI | ACNGT | 4 cut(s) | 187, 485, 664, 710 |
| TaqI | TCGA | 1 cut(s) | 874 |
| TasI | AATT | 5 cut(s) | 36, 80, 105, 525, 649 |
| TatI | WGTACW | 1 cut(s) | 276 |
| TfiI | GAWTC | 3 cut(s) | 47, 235, 367 |
| Tru1I | TTAA | 4 cut(s) | 35, 62, 375, 648 |
| Tru9I | TTAA | 4 cut(s) | 35, 62, 375, 648 |
| TscAI | CASTG | 1 cut(s) | 752 |
| TseI | GCWGC | 1 cut(s) | 863 |
| TspDTI | ATGAA | 2 cut(s) | 546, 642 |
| TspRI | CASTG | 1 cut(s) | 752 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 764 |
| XbaI | TCTAGA | 1 cut(s) | 139 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 744 |
| XspI | CTAG | 3 cut(s) | 140, 210, 762 |
| ZrmI | AGTACT | 1 cut(s) | 278 |