zinc-binding in reverse transcriptase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Fcf1 | PF04900 | 96 - 131 | 9.5e-06 | Fcf1 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 60 |
| AciI | CCGC | 1 cut(s) | 492 |
| AcsI | RAATTY | 1 cut(s) | 248 |
| AcuI | CTGAAG | 1 cut(s) | 492 |
| AfaI | GTAC | 2 cut(s) | 131, 407 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 116 |
| AgsI | TTSAA | 2 cut(s) | 212, 222 |
| AhlI | ACTAGT | 1 cut(s) | 113 |
| AluBI | AGCT | 3 cut(s) | 340, 529, 574 |
| AluI | AGCT | 3 cut(s) | 340, 529, 574 |
| Alw21I | GWGCWC | 1 cut(s) | 308 |
| Alw44I | GTGCAC | 1 cut(s) | 304 |
| ApaLI | GTGCAC | 1 cut(s) | 304 |
| ApeKI | GCWGC | 1 cut(s) | 529 |
| ApoI | RAATTY | 1 cut(s) | 248 |
| AsuC2I | CCSGG | 1 cut(s) | 410 |
| AsuII | TTCGAA | 1 cut(s) | 256 |
| BaeGI | GKGCMC | 1 cut(s) | 308 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 567, 600 |
| Bbv12I | GWGCWC | 1 cut(s) | 308 |
| BbvI | GCAGC | 1 cut(s) | 516 |
| BccI | CCATC | 2 cut(s) | 277, 442 |
| BcnI | CCSGG | 1 cut(s) | 410 |
| BcuI | ACTAGT | 1 cut(s) | 113 |
| BfaI | CTAG | 3 cut(s) | 114, 440, 593 |
| BisI | GCNGC | 1 cut(s) | 530 |
| BlsI | GCNGC | 1 cut(s) | 531 |
| Bme1390I | CCNGG | 1 cut(s) | 410 |
| BmiI | GGNNCC | 2 cut(s) | 166, 552 |
| BmrFI | CCNGG | 1 cut(s) | 410 |
| Bpu14I | TTCGAA | 1 cut(s) | 256 |
| BpuEI | CTTGAG | 1 cut(s) | 362 |
| BpuMI | CCSGG | 1 cut(s) | 410 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 116 |
| Bse3DI | GCAATG | 1 cut(s) | 449 |
| BseGI | GGATG | 1 cut(s) | 618 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 116 |
| BseMI | GCAATG | 1 cut(s) | 449 |
| BseMII | CTCAG | 1 cut(s) | 365 |
| BseSI | GKGCMC | 1 cut(s) | 308 |
| BseXI | GCAGC | 1 cut(s) | 516 |
| BseYI | CCCAGC | 1 cut(s) | 47 |
| BsiHKAI | GWGCWC | 1 cut(s) | 308 |
| BsiSI | CCGG | 1 cut(s) | 410 |
| BslFI | GGGAC | 1 cut(s) | 552 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 116 |
| BsmFI | GGGAC | 1 cut(s) | 552 |
| Bsp119I | TTCGAA | 1 cut(s) | 256 |
| Bsp1286I | GDGCHC | 1 cut(s) | 308 |
| BspACI | CCGC | 1 cut(s) | 492 |
| BspCNI | CTCAG | 1 cut(s) | 366 |
| BspLI | GGNNCC | 2 cut(s) | 166, 552 |
| BspT104I | TTCGAA | 1 cut(s) | 256 |
| BsrDI | GCAATG | 1 cut(s) | 449 |
| Bst4CI | ACNGT | 2 cut(s) | 7, 543 |
| Bst6I | CTCTTC | 1 cut(s) | 195 |
| BstBI | TTCGAA | 1 cut(s) | 256 |
| BstDEI | CTNAG | 3 cut(s) | 374, 495, 546 |
| BstF5I | GGATG | 1 cut(s) | 618 |
| BstSCI | CCNGG | 1 cut(s) | 408 |
| BstSLI | GKGCMC | 1 cut(s) | 308 |
| BstV1I | GCAGC | 1 cut(s) | 516 |
| BtsCI | GGATG | 1 cut(s) | 618 |
| BtsIMutI | CAGTG | 2 cut(s) | 243, 563 |
| Csp6I | GTAC | 2 cut(s) | 130, 406 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 139, 174 |
| CviAII | CATG | 1 cut(s) | 609 |
| CviJI | RGCY | 6 cut(s) | 47, 228, 340, 371, 529, 574 |
| CviKI_1 | RGCY | 6 cut(s) | 47, 228, 340, 371, 529, 574 |
| CviQI | GTAC | 2 cut(s) | 130, 406 |
| DdeI | CTNAG | 3 cut(s) | 374, 495, 546 |
| Eam1104I | CTCTTC | 1 cut(s) | 195 |
| EarI | CTCTTC | 1 cut(s) | 195 |
| Eco57I | CTGAAG | 1 cut(s) | 492 |
| FaeI | CATG | 1 cut(s) | 612 |
| FaiI | YATR | 9 cut(s) | 60, 101, 198, 295, 297, 320, 479, 603, 610 |
| FaqI | GGGAC | 1 cut(s) | 552 |
| FatI | CATG | 1 cut(s) | 608 |
| Fnu4HI | GCNGC | 1 cut(s) | 530 |
| Fsp4HI | GCNGC | 1 cut(s) | 530 |
| FspBI | CTAG | 3 cut(s) | 114, 440, 593 |
| GluI | GCNGC | 1 cut(s) | 530 |
| GsaI | CCCAGC | 1 cut(s) | 51 |
| HapII | CCGG | 1 cut(s) | 410 |
| Hin1II | CATG | 1 cut(s) | 612 |
| HincII | GTYRAC | 1 cut(s) | 193 |
| HindII | GTYRAC | 1 cut(s) | 193 |
| HindIII | AAGCTT | 1 cut(s) | 572 |
| HinfI | GANTC | 2 cut(s) | 488, 560 |
| HpaI | GTTAAC | 1 cut(s) | 193 |
| HpaII | CCGG | 1 cut(s) | 410 |
| Hpy166II | GTNNAC | 2 cut(s) | 193, 306 |
| Hpy188I | TCNGA | 3 cut(s) | 357, 375, 472 |
| Hpy188III | TCNNGA | 1 cut(s) | 523 |
| Hpy8I | GTNNAC | 2 cut(s) | 193, 306 |
| HpyAV | CCTTC | 2 cut(s) | 173, 268 |
| HpyCH4III | ACNGT | 2 cut(s) | 7, 543 |
| HpyCH4V | TGCA | 6 cut(s) | 55, 161, 299, 306, 454, 532 |
| HpyF3I | CTNAG | 3 cut(s) | 374, 495, 546 |
| Hsp92II | CATG | 1 cut(s) | 612 |
| KspAI | GTTAAC | 1 cut(s) | 193 |
| LpnPI | CCDG | 6 cut(s) | 33, 147, 166, 423, 519, 568 |
| Lsp1109I | GCAGC | 1 cut(s) | 516 |
| MaeI | CTAG | 3 cut(s) | 114, 440, 593 |
| MaeIII | GTNAC | 1 cut(s) | 425 |
| MboII | GAAGA | 5 cut(s) | 88, 188, 212, 485, 493 |
| MfeI | CAATTG | 1 cut(s) | 222 |
| MhlI | GDGCHC | 1 cut(s) | 308 |
| MluCI | AATT | 4 cut(s) | 37, 207, 222, 248 |
| MlyI | GAGTC | 1 cut(s) | 497 |
| MmeI | TCCRAC | 3 cut(s) | 51, 67, 243 |
| MnlI | CCTC | 1 cut(s) | 76 |
| MseI | TTAA | 3 cut(s) | 36, 192, 622 |
| MslI | CAYNNNNRTG | 1 cut(s) | 60 |
| MspI | CCGG | 1 cut(s) | 410 |
| MspR9I | CCNGG | 1 cut(s) | 410 |
| MunI | CAATTG | 1 cut(s) | 222 |
| NciI | CCSGG | 1 cut(s) | 410 |
| NlaIII | CATG | 1 cut(s) | 612 |
| NlaIV | GGNNCC | 2 cut(s) | 166, 552 |
| NspV | TTCGAA | 1 cut(s) | 256 |
| PfeI | GAWTC | 1 cut(s) | 560 |
| PkrI | GCNGC | 1 cut(s) | 531 |
| PleI | GAGTC | 1 cut(s) | 496 |
| PpsI | GAGTC | 1 cut(s) | 496 |
| PsiI | TTATAA | 1 cut(s) | 60 |
| PspFI | CCCAGC | 1 cut(s) | 47 |
| PspN4I | GGNNCC | 2 cut(s) | 166, 552 |
| RsaI | GTAC | 2 cut(s) | 131, 407 |
| RsaNI | GTAC | 2 cut(s) | 130, 406 |
| RseI | CAYNNNNRTG | 1 cut(s) | 60 |
| SaqAI | TTAA | 3 cut(s) | 36, 192, 622 |
| SatI | GCNGC | 1 cut(s) | 530 |
| SchI | GAGTC | 1 cut(s) | 497 |
| ScrFI | CCNGG | 1 cut(s) | 410 |
| SduI | GDGCHC | 1 cut(s) | 308 |
| SetI | ASST | 6 cut(s) | 87, 294, 342, 522, 531, 576 |
| SfuI | TTCGAA | 1 cut(s) | 256 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 60 |
| SmlI | CTYRAG | 1 cut(s) | 341 |
| SmoI | CTYRAG | 1 cut(s) | 341 |
| SpeI | ACTAGT | 1 cut(s) | 113 |
| Sse9I | AATT | 4 cut(s) | 37, 207, 222, 248 |
| SsiI | CCGC | 1 cut(s) | 492 |
| SspMI | CTAG | 3 cut(s) | 114, 440, 593 |
| StyD4I | CCNGG | 1 cut(s) | 408 |
| TaaI | ACNGT | 2 cut(s) | 7, 543 |
| TaqI | TCGA | 1 cut(s) | 256 |
| TasI | AATT | 4 cut(s) | 37, 207, 222, 248 |
| TfiI | GAWTC | 1 cut(s) | 560 |
| Tru1I | TTAA | 3 cut(s) | 36, 192, 622 |
| Tru9I | TTAA | 3 cut(s) | 36, 192, 622 |
| TscAI | CASTG | 2 cut(s) | 243, 570 |
| TseI | GCWGC | 1 cut(s) | 529 |
| TspDTI | ATGAA | 4 cut(s) | 213, 384, 438, 479 |
| TspRI | CASTG | 2 cut(s) | 243, 570 |
| VneI | GTGCAC | 1 cut(s) | 304 |
| XapI | RAATTY | 1 cut(s) | 248 |
| XspI | CTAG | 3 cut(s) | 114, 440, 593 |