ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 12 - 71 | 2e-10 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcyI | GRCGYC | 1 cut(s) | 22 |
| AfaI | GTAC | 1 cut(s) | 106 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 17, 18 |
| AflIII | ACRYGT | 1 cut(s) | 107 |
| AgsI | TTSAA | 1 cut(s) | 170 |
| AsuC2I | CCSGG | 1 cut(s) | 53 |
| AsuHPI | GGTGA | 1 cut(s) | 77 |
| BccI | CCATC | 3 cut(s) | 35, 62, 210 |
| BceAI | ACGGC | 1 cut(s) | 138 |
| BclI | TGATCA | 1 cut(s) | 58 |
| BcnI | CCSGG | 1 cut(s) | 53 |
| BfaI | CTAG | 2 cut(s) | 15, 243 |
| Bme1390I | CCNGG | 1 cut(s) | 53 |
| BmrFI | CCNGG | 1 cut(s) | 53 |
| BpuMI | CCSGG | 1 cut(s) | 53 |
| BsaAI | YACGTR | 2 cut(s) | 92, 108 |
| BsaHI | GRCGYC | 1 cut(s) | 22 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 66, 96 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 17, 18 |
| BseGI | GGATG | 1 cut(s) | 46 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 17, 18 |
| BseYI | CCCAGC | 1 cut(s) | 182 |
| BsiSI | CCGG | 1 cut(s) | 52 |
| BslFI | GGGAC | 1 cut(s) | 221 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 17, 18 |
| BsmFI | GGGAC | 1 cut(s) | 221 |
| Bsp143I | GATC | 1 cut(s) | 58 |
| BssMI | GATC | 1 cut(s) | 58 |
| BssNI | GRCGYC | 1 cut(s) | 22 |
| BstACI | GRCGYC | 1 cut(s) | 22 |
| BstBAI | YACGTR | 2 cut(s) | 92, 108 |
| BstC8I | GCNNGC | 1 cut(s) | 248 |
| BstF5I | GGATG | 1 cut(s) | 46 |
| BstKTI | GATC | 1 cut(s) | 61 |
| BstMBI | GATC | 1 cut(s) | 58 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 149, 179 |
| BstNSI | RCATGY | 2 cut(s) | 143, 177 |
| BstSCI | CCNGG | 1 cut(s) | 51 |
| BtsCI | GGATG | 1 cut(s) | 46 |
| Cac8I | GCNNGC | 1 cut(s) | 248 |
| CseI | GACGC | 1 cut(s) | 11 |
| Csp6I | GTAC | 1 cut(s) | 105 |
| CviAII | CATG | 4 cut(s) | 62, 140, 174, 211 |
| CviJI | RGCY | 5 cut(s) | 56, 119, 125, 182, 187 |
| CviKI_1 | RGCY | 5 cut(s) | 56, 119, 125, 182, 187 |
| CviQI | GTAC | 1 cut(s) | 105 |
| DpnI | GATC | 1 cut(s) | 60 |
| DpnII | GATC | 1 cut(s) | 58 |
| FaeI | CATG | 4 cut(s) | 65, 143, 177, 214 |
| FaiI | YATR | 6 cut(s) | 63, 141, 159, 161, 175, 212 |
| FaqI | GGGAC | 1 cut(s) | 221 |
| FatI | CATG | 4 cut(s) | 61, 139, 173, 210 |
| FauNDI | CATATG | 1 cut(s) | 159 |
| FbaI | TGATCA | 1 cut(s) | 58 |
| FokI | GGATG | 1 cut(s) | 53 |
| FspBI | CTAG | 2 cut(s) | 15, 243 |
| GsaI | CCCAGC | 1 cut(s) | 186 |
| HapII | CCGG | 1 cut(s) | 52 |
| HgaI | GACGC | 1 cut(s) | 11 |
| Hin1I | GRCGYC | 1 cut(s) | 22 |
| Hin1II | CATG | 4 cut(s) | 65, 143, 177, 214 |
| HpaII | CCGG | 1 cut(s) | 52 |
| HphI | GGTGA | 1 cut(s) | 77 |
| Hpy188I | TCNGA | 1 cut(s) | 27 |
| Hpy188III | TCNNGA | 1 cut(s) | 206 |
| HpyCH4IV | ACGT | 2 cut(s) | 91, 107 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 149, 179 |
| HpySE526I | ACGT | 2 cut(s) | 91, 107 |
| Hsp92I | GRCGYC | 1 cut(s) | 22 |
| Hsp92II | CATG | 4 cut(s) | 65, 143, 177, 214 |
| Ksp22I | TGATCA | 1 cut(s) | 58 |
| Kzo9I | GATC | 1 cut(s) | 58 |
| LpnPI | CCDG | 2 cut(s) | 65, 168 |
| MaeI | CTAG | 2 cut(s) | 15, 243 |
| MaeII | ACGT | 2 cut(s) | 91, 107 |
| MaeIII | GTNAC | 2 cut(s) | 47, 238 |
| MalI | GATC | 1 cut(s) | 60 |
| MboI | GATC | 1 cut(s) | 58 |
| MluCI | AATT | 1 cut(s) | 234 |
| MnlI | CCTC | 1 cut(s) | 157 |
| MslI | CAYNNNNRTG | 1 cut(s) | 66 |
| MspI | CCGG | 1 cut(s) | 52 |
| MspR9I | CCNGG | 1 cut(s) | 53 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 149, 179 |
| NciI | CCSGG | 1 cut(s) | 53 |
| NdeI | CATATG | 1 cut(s) | 159 |
| NdeII | GATC | 1 cut(s) | 58 |
| NlaIII | CATG | 4 cut(s) | 65, 143, 177, 214 |
| NspI | RCATGY | 2 cut(s) | 143, 177 |
| Ppu21I | YACGTR | 2 cut(s) | 92, 108 |
| PspFI | CCCAGC | 1 cut(s) | 182 |
| RsaI | GTAC | 1 cut(s) | 106 |
| RsaNI | GTAC | 1 cut(s) | 105 |
| RseI | CAYNNNNRTG | 1 cut(s) | 66 |
| Sau3AI | GATC | 1 cut(s) | 58 |
| ScrFI | CCNGG | 1 cut(s) | 53 |
| SetI | ASST | 3 cut(s) | 94, 110, 168 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 66 |
| Sse9I | AATT | 1 cut(s) | 234 |
| SspMI | CTAG | 2 cut(s) | 15, 243 |
| StyD4I | CCNGG | 1 cut(s) | 51 |
| TaiI | ACGT | 2 cut(s) | 94, 110 |
| TaqI | TCGA | 1 cut(s) | 127 |
| TaqII | GACCGA | 1 cut(s) | 230 |
| TasI | AATT | 1 cut(s) | 234 |
| TspDTI | ATGAA | 2 cut(s) | 111, 135 |
| XceI | RCATGY | 2 cut(s) | 143, 177 |
| XspI | CTAG | 2 cut(s) | 15, 243 |