ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 75, 381 |
| AccIII | TCCGGA | 2 cut(s) | 246, 310 |
| AcoI | YGGCCR | 1 cut(s) | 33 |
| AdeI | CACNNNGTG | 1 cut(s) | 29 |
| AfaI | GTAC | 1 cut(s) | 333 |
| AhlI | ACTAGT | 1 cut(s) | 359 |
| AjnI | CCWGG | 1 cut(s) | 385 |
| AluBI | AGCT | 3 cut(s) | 96, 106, 341 |
| AluI | AGCT | 3 cut(s) | 96, 106, 341 |
| Alw21I | GWGCWC | 1 cut(s) | 108 |
| Alw26I | GTCTC | 2 cut(s) | 156, 289 |
| Aor13HI | TCCGGA | 2 cut(s) | 246, 310 |
| AoxI | GGCC | 1 cut(s) | 33 |
| AsuHPI | GGTGA | 1 cut(s) | 401 |
| BanII | GRGCYC | 1 cut(s) | 108 |
| BauI | CACGAG | 1 cut(s) | 327 |
| Bbv12I | GWGCWC | 1 cut(s) | 108 |
| BccI | CCATC | 1 cut(s) | 285 |
| BciT130I | CCWGG | 1 cut(s) | 387 |
| BclI | TGATCA | 1 cut(s) | 51 |
| BcoDI | GTCTC | 2 cut(s) | 156, 289 |
| BcuI | ACTAGT | 1 cut(s) | 359 |
| BfaI | CTAG | 1 cut(s) | 360 |
| BmcAI | AGTACT | 1 cut(s) | 333 |
| Bme1390I | CCNGG | 1 cut(s) | 387 |
| BmiI | GGNNCC | 1 cut(s) | 245 |
| BmrFI | CCNGG | 1 cut(s) | 387 |
| BmsI | GCATC | 1 cut(s) | 120 |
| BpuEI | CTTGAG | 1 cut(s) | 146 |
| BsaJI | CCNNGG | 1 cut(s) | 385 |
| BsaWI | WCCGGW | 2 cut(s) | 246, 310 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 221, 251 |
| Bse118I | RCCGGY | 1 cut(s) | 35 |
| BseAI | TCCGGA | 2 cut(s) | 246, 310 |
| BseBI | CCWGG | 1 cut(s) | 387 |
| BseDI | CCNNGG | 1 cut(s) | 385 |
| BseGI | GGATG | 2 cut(s) | 143, 296 |
| BseMII | CTCAG | 1 cut(s) | 40 |
| BseRI | GAGGAG | 2 cut(s) | 242, 266 |
| BshFI | GGCC | 1 cut(s) | 35 |
| BsiHKAI | GWGCWC | 1 cut(s) | 108 |
| BsiSI | CCGG | 3 cut(s) | 36, 247, 311 |
| BslFI | GGGAC | 1 cut(s) | 215 |
| BsmAI | GTCTC | 2 cut(s) | 156, 289 |
| BsmFI | GGGAC | 1 cut(s) | 215 |
| BsmI | GAATGC | 1 cut(s) | 216 |
| BsnI | GGCC | 1 cut(s) | 35 |
| Bsp1286I | GDGCHC | 1 cut(s) | 108 |
| Bsp13I | TCCGGA | 2 cut(s) | 246, 310 |
| Bsp143I | GATC | 1 cut(s) | 51 |
| BspANI | GGCC | 1 cut(s) | 35 |
| BspCNI | CTCAG | 1 cut(s) | 39 |
| BspEI | TCCGGA | 2 cut(s) | 246, 310 |
| BspLI | GGNNCC | 1 cut(s) | 245 |
| BsrFI | RCCGGY | 1 cut(s) | 35 |
| BssAI | RCCGGY | 1 cut(s) | 35 |
| BssECI | CCNNGG | 1 cut(s) | 385 |
| BssMI | GATC | 1 cut(s) | 51 |
| BssSI | CACGAG | 1 cut(s) | 327 |
| Bst2BI | CACGAG | 1 cut(s) | 327 |
| Bst2UI | CCWGG | 1 cut(s) | 387 |
| BstC8I | GCNNGC | 1 cut(s) | 37 |
| BstDEI | CTNAG | 2 cut(s) | 26, 342 |
| BstF5I | GGATG | 2 cut(s) | 143, 296 |
| BstKTI | GATC | 1 cut(s) | 54 |
| BstMAI | GTCTC | 2 cut(s) | 156, 289 |
| BstMBI | GATC | 1 cut(s) | 51 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 278 |
| BstNI | CCWGG | 1 cut(s) | 387 |
| BstSCI | CCNGG | 1 cut(s) | 385 |
| BsuRI | GGCC | 1 cut(s) | 35 |
| BtsCI | GGATG | 2 cut(s) | 143, 296 |
| BtsIMutI | CAGTG | 1 cut(s) | 34 |
| Cac8I | GCNNGC | 1 cut(s) | 37 |
| Cfr10I | RCCGGY | 1 cut(s) | 35 |
| Csp6I | GTAC | 1 cut(s) | 332 |
| CviAII | CATG | 1 cut(s) | 134 |
| CviJI | RGCY | 4 cut(s) | 35, 96, 106, 341 |
| CviKI_1 | RGCY | 4 cut(s) | 35, 96, 106, 341 |
| CviQI | GTAC | 1 cut(s) | 332 |
| DdeI | CTNAG | 2 cut(s) | 26, 342 |
| DpnI | GATC | 1 cut(s) | 53 |
| DpnII | GATC | 1 cut(s) | 51 |
| DraI | TTTAAA | 1 cut(s) | 369 |
| DraIII | CACNNNGTG | 1 cut(s) | 29 |
| EaeI | YGGCCR | 1 cut(s) | 33 |
| Ecl136II | GAGCTC | 1 cut(s) | 106 |
| Eco24I | GRGCYC | 1 cut(s) | 108 |
| Eco53kI | GAGCTC | 1 cut(s) | 106 |
| EcoICRI | GAGCTC | 1 cut(s) | 106 |
| EcoRII | CCWGG | 1 cut(s) | 385 |
| EcoT22I | ATGCAT | 1 cut(s) | 135 |
| EcoT38I | GRGCYC | 1 cut(s) | 108 |
| FaeI | CATG | 1 cut(s) | 137 |
| FaiI | YATR | 6 cut(s) | 85, 87, 121, 135, 143, 254 |
| FaqI | GGGAC | 1 cut(s) | 215 |
| FatI | CATG | 1 cut(s) | 133 |
| FauNDI | CATATG | 1 cut(s) | 85 |
| FbaI | TGATCA | 1 cut(s) | 51 |
| FblI | GTMKAC | 2 cut(s) | 75, 381 |
| FokI | GGATG | 2 cut(s) | 150, 303 |
| FriOI | GRGCYC | 1 cut(s) | 108 |
| FspBI | CTAG | 1 cut(s) | 360 |
| HaeIII | GGCC | 1 cut(s) | 35 |
| HapII | CCGG | 3 cut(s) | 36, 247, 311 |
| Hin1II | CATG | 1 cut(s) | 137 |
| HincII | GTYRAC | 2 cut(s) | 76, 382 |
| HindII | GTYRAC | 2 cut(s) | 76, 382 |
| HinfI | GANTC | 2 cut(s) | 314, 392 |
| HpaII | CCGG | 3 cut(s) | 36, 247, 311 |
| HphI | GGTGA | 1 cut(s) | 401 |
| Hpy166II | GTNNAC | 2 cut(s) | 76, 382 |
| Hpy188I | TCNGA | 2 cut(s) | 180, 222 |
| Hpy188III | TCNNGA | 2 cut(s) | 247, 311 |
| Hpy8I | GTNNAC | 2 cut(s) | 76, 382 |
| HpyAV | CCTTC | 1 cut(s) | 7 |
| HpyCH4IV | ACGT | 1 cut(s) | 172 |
| HpyCH4V | TGCA | 3 cut(s) | 133, 216, 326 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 278 |
| HpyF3I | CTNAG | 2 cut(s) | 26, 342 |
| HpySE526I | ACGT | 1 cut(s) | 172 |
| Hsp92II | CATG | 1 cut(s) | 137 |
| Kpn2I | TCCGGA | 2 cut(s) | 246, 310 |
| KroI | GCCGGC | 1 cut(s) | 35 |
| KroNI | GCCGGC | 1 cut(s) | 37 |
| Ksp22I | TGATCA | 1 cut(s) | 51 |
| Kzo9I | GATC | 1 cut(s) | 51 |
| LmnI | GCTCC | 1 cut(s) | 111 |
| LpnPI | CCDG | 6 cut(s) | 49, 254, 260, 324, 372, 399 |
| LweI | GCATC | 1 cut(s) | 120 |
| MaeI | CTAG | 1 cut(s) | 360 |
| MaeII | ACGT | 1 cut(s) | 172 |
| MalI | GATC | 1 cut(s) | 53 |
| MboI | GATC | 1 cut(s) | 51 |
| MboII | GAAGA | 1 cut(s) | 16 |
| MhlI | GDGCHC | 1 cut(s) | 108 |
| MluCI | AATT | 1 cut(s) | 7 |
| MnlI | CCTC | 4 cut(s) | 220, 223, 287, 363 |
| Mph1103I | ATGCAT | 1 cut(s) | 135 |
| MroI | TCCGGA | 2 cut(s) | 246, 310 |
| MroNI | GCCGGC | 1 cut(s) | 35 |
| MseI | TTAA | 3 cut(s) | 264, 303, 368 |
| MspI | CCGG | 3 cut(s) | 36, 247, 311 |
| MspR9I | CCNGG | 1 cut(s) | 387 |
| Mva1269I | GAATGC | 1 cut(s) | 216 |
| MvaI | CCWGG | 1 cut(s) | 387 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 278 |
| NaeI | GCCGGC | 1 cut(s) | 37 |
| NdeI | CATATG | 1 cut(s) | 85 |
| NdeII | GATC | 1 cut(s) | 51 |
| NgoMIV | GCCGGC | 1 cut(s) | 35 |
| NlaIII | CATG | 1 cut(s) | 137 |
| NlaIV | GGNNCC | 1 cut(s) | 245 |
| NsiI | ATGCAT | 1 cut(s) | 135 |
| PctI | GAATGC | 1 cut(s) | 216 |
| PdiI | GCCGGC | 1 cut(s) | 37 |
| PfeI | GAWTC | 2 cut(s) | 314, 392 |
| Psp124BI | GAGCTC | 1 cut(s) | 108 |
| Psp6I | CCWGG | 1 cut(s) | 385 |
| PspGI | CCWGG | 1 cut(s) | 385 |
| PspN4I | GGNNCC | 1 cut(s) | 245 |
| RsaI | GTAC | 1 cut(s) | 333 |
| RsaNI | GTAC | 1 cut(s) | 332 |
| SacI | GAGCTC | 1 cut(s) | 108 |
| SalI | GTCGAC | 2 cut(s) | 74, 380 |
| SaqAI | TTAA | 3 cut(s) | 264, 303, 368 |
| Sau3AI | GATC | 1 cut(s) | 51 |
| ScaI | AGTACT | 1 cut(s) | 333 |
| ScrFI | CCNGG | 1 cut(s) | 387 |
| SduI | GDGCHC | 1 cut(s) | 108 |
| SetI | ASST | 6 cut(s) | 98, 108, 120, 175, 343, 391 |
| SfaNI | GCATC | 1 cut(s) | 120 |
| SmlI | CTYRAG | 1 cut(s) | 125 |
| SmoI | CTYRAG | 1 cut(s) | 125 |
| SpeI | ACTAGT | 1 cut(s) | 359 |
| Sse9I | AATT | 1 cut(s) | 7 |
| SspI | AATATT | 1 cut(s) | 373 |
| SspMI | CTAG | 1 cut(s) | 360 |
| SstI | GAGCTC | 1 cut(s) | 108 |
| StyD4I | CCNGG | 1 cut(s) | 385 |
| TaiI | ACGT | 1 cut(s) | 175 |
| TaqI | TCGA | 2 cut(s) | 75, 381 |
| TasI | AATT | 1 cut(s) | 7 |
| TatI | WGTACW | 1 cut(s) | 331 |
| TfiI | GAWTC | 2 cut(s) | 314, 392 |
| Tru1I | TTAA | 3 cut(s) | 264, 303, 368 |
| Tru9I | TTAA | 3 cut(s) | 264, 303, 368 |
| TscAI | CASTG | 1 cut(s) | 34 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspRI | CASTG | 1 cut(s) | 34 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 393 |
| XmiI | GTMKAC | 2 cut(s) | 75, 381 |
| XspI | CTAG | 1 cut(s) | 360 |
| ZrmI | AGTACT | 1 cut(s) | 333 |
| Zsp2I | ATGCAT | 1 cut(s) | 135 |