zinc-binding in reverse transcriptase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 11 - 79 | 1.3e-15 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 70 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 73, 346, 520 |
| AflII | CTTAAG | 1 cut(s) | 287 |
| AgsI | TTSAA | 1 cut(s) | 301 |
| AjnI | CCWGG | 2 cut(s) | 66, 502 |
| AluBI | AGCT | 5 cut(s) | 15, 31, 104, 163, 550 |
| AluI | AGCT | 5 cut(s) | 15, 31, 104, 163, 550 |
| Alw21I | GWGCWC | 2 cut(s) | 436, 563 |
| Alw44I | GTGCAC | 1 cut(s) | 559 |
| ApaLI | GTGCAC | 1 cut(s) | 559 |
| AspS9I | GGNCC | 1 cut(s) | 483 |
| AsuC2I | CCSGG | 1 cut(s) | 75 |
| AsuHPI | GGTGA | 2 cut(s) | 361, 465 |
| AvaII | GGWCC | 1 cut(s) | 483 |
| BaeGI | GKGCMC | 1 cut(s) | 563 |
| BanI | GGYRCC | 1 cut(s) | 70 |
| Bbv12I | GWGCWC | 2 cut(s) | 436, 563 |
| BccI | CCATC | 1 cut(s) | 538 |
| BciT130I | CCWGG | 2 cut(s) | 68, 504 |
| BcnI | CCSGG | 1 cut(s) | 75 |
| BfaI | CTAG | 3 cut(s) | 12, 126, 137 |
| BfrI | CTTAAG | 1 cut(s) | 287 |
| BglII | AGATCT | 1 cut(s) | 128 |
| Bme1390I | CCNGG | 3 cut(s) | 68, 75, 504 |
| Bme18I | GGWCC | 1 cut(s) | 483 |
| BmgT120I | GGNCC | 1 cut(s) | 483 |
| BmiI | GGNNCC | 2 cut(s) | 72, 485 |
| BmrFI | CCNGG | 3 cut(s) | 68, 75, 504 |
| BpuEI | CTTGAG | 1 cut(s) | 420 |
| BpuMI | CCSGG | 1 cut(s) | 75 |
| Bsa29I | ATCGAT | 1 cut(s) | 332 |
| BsaJI | CCNNGG | 1 cut(s) | 479 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 498, 528 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 73, 346, 520 |
| Bse118I | RCCGGY | 1 cut(s) | 339 |
| BseBI | CCWGG | 2 cut(s) | 68, 504 |
| BseCI | ATCGAT | 1 cut(s) | 332 |
| BseDI | CCNNGG | 1 cut(s) | 479 |
| BseGI | GGATG | 1 cut(s) | 549 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 73, 346, 520 |
| BseRI | GAGGAG | 3 cut(s) | 7, 12, 413 |
| BseSI | GKGCMC | 1 cut(s) | 563 |
| BshNI | GGYRCC | 1 cut(s) | 70 |
| BshVI | ATCGAT | 1 cut(s) | 332 |
| BsiHKAI | GWGCWC | 2 cut(s) | 436, 563 |
| BsiSI | CCGG | 2 cut(s) | 74, 340 |
| BslFI | GGGAC | 1 cut(s) | 469 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 73, 346, 520 |
| BsmFI | GGGAC | 1 cut(s) | 469 |
| Bsp1286I | GDGCHC | 2 cut(s) | 436, 563 |
| Bsp143I | GATC | 2 cut(s) | 128, 416 |
| BspDI | ATCGAT | 1 cut(s) | 332 |
| BspLI | GGNNCC | 2 cut(s) | 72, 485 |
| BspT107I | GGYRCC | 1 cut(s) | 70 |
| BspTI | CTTAAG | 1 cut(s) | 287 |
| BsrFI | RCCGGY | 1 cut(s) | 339 |
| BssAI | RCCGGY | 1 cut(s) | 339 |
| BssECI | CCNNGG | 1 cut(s) | 479 |
| BssMI | GATC | 2 cut(s) | 128, 416 |
| BssT1I | CCWWGG | 1 cut(s) | 479 |
| Bst2UI | CCWGG | 2 cut(s) | 68, 504 |
| Bst4CI | ACNGT | 1 cut(s) | 357 |
| Bst6I | CTCTTC | 1 cut(s) | 207 |
| BstAFI | CTTAAG | 1 cut(s) | 287 |
| BstC8I | GCNNGC | 3 cut(s) | 341, 447, 500 |
| BstDEI | CTNAG | 1 cut(s) | 428 |
| BstF5I | GGATG | 1 cut(s) | 549 |
| BstKTI | GATC | 2 cut(s) | 131, 419 |
| BstMBI | GATC | 2 cut(s) | 128, 416 |
| BstNI | CCWGG | 2 cut(s) | 68, 504 |
| BstNSI | RCATGY | 2 cut(s) | 449, 502 |
| BstSCI | CCNGG | 3 cut(s) | 66, 73, 502 |
| BstSLI | GKGCMC | 1 cut(s) | 563 |
| BstX2I | RGATCY | 1 cut(s) | 128 |
| BstYI | RGATCY | 1 cut(s) | 128 |
| Bsu15I | ATCGAT | 1 cut(s) | 332 |
| BsuTUI | ATCGAT | 1 cut(s) | 332 |
| BtsCI | GGATG | 1 cut(s) | 549 |
| Cac8I | GCNNGC | 3 cut(s) | 341, 447, 500 |
| Cfr10I | RCCGGY | 1 cut(s) | 339 |
| Cfr13I | GGNCC | 1 cut(s) | 483 |
| ClaI | ATCGAT | 1 cut(s) | 332 |
| CviAII | CATG | 3 cut(s) | 446, 499, 540 |
| CviJI | RGCY | 9 cut(s) | 5, 15, 31, 104, 163, 343, 412, 513, 550 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 15, 31, 104, 163, 343, 412, 513, 550 |
| DdeI | CTNAG | 1 cut(s) | 428 |
| DpnI | GATC | 2 cut(s) | 130, 418 |
| DpnII | GATC | 2 cut(s) | 128, 416 |
| Eam1104I | CTCTTC | 1 cut(s) | 207 |
| EarI | CTCTTC | 1 cut(s) | 207 |
| Eco130I | CCWWGG | 1 cut(s) | 479 |
| Eco47I | GGWCC | 1 cut(s) | 483 |
| EcoO109I | RGGNCCY | 1 cut(s) | 483 |
| EcoRII | CCWGG | 2 cut(s) | 66, 502 |
| EcoT14I | CCWWGG | 1 cut(s) | 479 |
| ErhI | CCWWGG | 1 cut(s) | 479 |
| FaeI | CATG | 3 cut(s) | 449, 502, 543 |
| FaiI | YATR | 8 cut(s) | 97, 178, 207, 260, 311, 447, 500, 541 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 147, 179 |
| FaqI | GGGAC | 1 cut(s) | 469 |
| FatI | CATG | 3 cut(s) | 445, 498, 539 |
| FokI | GGATG | 1 cut(s) | 556 |
| FspBI | CTAG | 3 cut(s) | 12, 126, 137 |
| HapII | CCGG | 2 cut(s) | 74, 340 |
| Hin1II | CATG | 3 cut(s) | 449, 502, 543 |
| HindIII | AAGCTT | 1 cut(s) | 102 |
| HinfI | GANTC | 1 cut(s) | 241 |
| HpaII | CCGG | 2 cut(s) | 74, 340 |
| HphI | GGTGA | 2 cut(s) | 361, 465 |
| Hpy166II | GTNNAC | 1 cut(s) | 561 |
| Hpy188III | TCNNGA | 1 cut(s) | 110 |
| Hpy8I | GTNNAC | 1 cut(s) | 561 |
| HpyCH4III | ACNGT | 1 cut(s) | 357 |
| HpyCH4V | TGCA | 3 cut(s) | 230, 539, 561 |
| HpyF3I | CTNAG | 1 cut(s) | 428 |
| Hsp92II | CATG | 3 cut(s) | 449, 502, 543 |
| KroI | GCCGGC | 1 cut(s) | 339 |
| KroNI | GCCGGC | 1 cut(s) | 341 |
| Kzo9I | GATC | 2 cut(s) | 128, 416 |
| LmnI | GCTCC | 3 cut(s) | 20, 160, 547 |
| LpnPI | CCDG | 9 cut(s) | 53, 80, 87, 240, 353, 489, 516, 530, 557 |
| MaeI | CTAG | 3 cut(s) | 12, 126, 137 |
| MalI | GATC | 2 cut(s) | 130, 418 |
| MboI | GATC | 2 cut(s) | 128, 416 |
| MboII | GAAGA | 5 cut(s) | 61, 157, 194, 203, 449 |
| MflI | RGATCY | 1 cut(s) | 128 |
| MhlI | GDGCHC | 2 cut(s) | 436, 563 |
| MluCI | AATT | 5 cut(s) | 301, 317, 403, 451, 492 |
| MlyI | GAGTC | 1 cut(s) | 235 |
| MnlI | CCTC | 9 cut(s) | 28, 33, 181, 210, 286, 333, 423, 434, 524 |
| MroNI | GCCGGC | 1 cut(s) | 339 |
| MseI | TTAA | 2 cut(s) | 141, 288 |
| MslI | CAYNNNNRTG | 1 cut(s) | 572 |
| MspCI | CTTAAG | 1 cut(s) | 287 |
| MspI | CCGG | 2 cut(s) | 74, 340 |
| MspR9I | CCNGG | 3 cut(s) | 68, 75, 504 |
| MvaI | CCWGG | 2 cut(s) | 68, 504 |
| NaeI | GCCGGC | 1 cut(s) | 341 |
| NciI | CCSGG | 1 cut(s) | 75 |
| NdeII | GATC | 2 cut(s) | 128, 416 |
| NgoMIV | GCCGGC | 1 cut(s) | 339 |
| NlaIII | CATG | 3 cut(s) | 449, 502, 543 |
| NlaIV | GGNNCC | 2 cut(s) | 72, 485 |
| NspI | RCATGY | 2 cut(s) | 449, 502 |
| PaeI | GCATGC | 2 cut(s) | 449, 502 |
| PdiI | GCCGGC | 1 cut(s) | 341 |
| PleI | GAGTC | 1 cut(s) | 235 |
| PpsI | GAGTC | 1 cut(s) | 235 |
| PpuMI | RGGWCCY | 1 cut(s) | 483 |
| Psp5II | RGGWCCY | 1 cut(s) | 483 |
| Psp6I | CCWGG | 2 cut(s) | 66, 502 |
| PspGI | CCWGG | 2 cut(s) | 66, 502 |
| PspN4I | GGNNCC | 2 cut(s) | 72, 485 |
| PspPI | GGNCC | 1 cut(s) | 483 |
| PspPPI | RGGWCCY | 1 cut(s) | 483 |
| PsuI | RGATCY | 1 cut(s) | 128 |
| RseI | CAYNNNNRTG | 1 cut(s) | 572 |
| SaqAI | TTAA | 2 cut(s) | 141, 288 |
| Sau3AI | GATC | 2 cut(s) | 128, 416 |
| Sau96I | GGNCC | 1 cut(s) | 483 |
| SchI | GAGTC | 1 cut(s) | 235 |
| ScrFI | CCNGG | 3 cut(s) | 68, 75, 504 |
| SduI | GDGCHC | 2 cut(s) | 436, 563 |
| SetI | ASST | 8 cut(s) | 17, 33, 72, 106, 165, 325, 485, 552 |
| SinI | GGWCC | 1 cut(s) | 483 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 572 |
| SmlI | CTYRAG | 2 cut(s) | 287, 435 |
| SmoI | CTYRAG | 2 cut(s) | 287, 435 |
| SphI | GCATGC | 2 cut(s) | 449, 502 |
| Sse9I | AATT | 5 cut(s) | 301, 317, 403, 451, 492 |
| SspI | AATATT | 2 cut(s) | 88, 469 |
| SspMI | CTAG | 3 cut(s) | 12, 126, 137 |
| StyD4I | CCNGG | 3 cut(s) | 66, 73, 502 |
| StyI | CCWWGG | 1 cut(s) | 479 |
| TaaI | ACNGT | 1 cut(s) | 357 |
| TaqI | TCGA | 2 cut(s) | 332, 415 |
| TasI | AATT | 5 cut(s) | 301, 317, 403, 451, 492 |
| Tru1I | TTAA | 2 cut(s) | 141, 288 |
| Tru9I | TTAA | 2 cut(s) | 141, 288 |
| TspDTI | ATGAA | 1 cut(s) | 194 |
| Vha464I | CTTAAG | 1 cut(s) | 287 |
| VneI | GTGCAC | 1 cut(s) | 559 |
| VpaK11BI | GGWCC | 1 cut(s) | 483 |
| XceI | RCATGY | 2 cut(s) | 449, 502 |
| XspI | CTAG | 3 cut(s) | 12, 126, 137 |