Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 85 - 163 | 7.2e-07 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 335 |
| AcoI | YGGCCR | 1 cut(s) | 378 |
| AcsI | RAATTY | 1 cut(s) | 167 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 105, 376 |
| AgsI | TTSAA | 1 cut(s) | 482 |
| AluBI | AGCT | 5 cut(s) | 17, 204, 232, 395, 476 |
| AluI | AGCT | 5 cut(s) | 17, 204, 232, 395, 476 |
| Alw26I | GTCTC | 1 cut(s) | 377 |
| AoxI | GGCC | 2 cut(s) | 336, 378 |
| ApeKI | GCWGC | 2 cut(s) | 201, 473 |
| ApoI | RAATTY | 1 cut(s) | 167 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 167 |
| AsuHPI | GGTGA | 3 cut(s) | 41, 316, 335 |
| BbsI | GAAGAC | 1 cut(s) | 59 |
| BbvI | GCAGC | 2 cut(s) | 213, 485 |
| BccI | CCATC | 2 cut(s) | 237, 463 |
| BceAI | ACGGC | 1 cut(s) | 279 |
| BcoDI | GTCTC | 1 cut(s) | 377 |
| BfaI | CTAG | 1 cut(s) | 396 |
| BisI | GCNGC | 3 cut(s) | 202, 336, 474 |
| BlsI | GCNGC | 3 cut(s) | 203, 337, 475 |
| BmsI | GCATC | 3 cut(s) | 346, 391, 445 |
| BpiI | GAAGAC | 1 cut(s) | 59 |
| BsaJI | CCNNGG | 4 cut(s) | 61, 339, 407, 438 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 105, 376 |
| Bse1I | ACTGG | 1 cut(s) | 182 |
| BseDI | CCNNGG | 4 cut(s) | 61, 339, 407, 438 |
| BseGI | GGATG | 6 cut(s) | 165, 231, 248, 277, 406, 460 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 105, 376 |
| BseNI | ACTGG | 1 cut(s) | 182 |
| BseXI | GCAGC | 2 cut(s) | 213, 485 |
| BseYI | CCCAGC | 1 cut(s) | 232 |
| BshFI | GGCC | 2 cut(s) | 338, 380 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 105, 376 |
| BsmAI | GTCTC | 1 cut(s) | 377 |
| BsnI | GGCC | 2 cut(s) | 338, 380 |
| BspACI | CCGC | 1 cut(s) | 335 |
| BspANI | GGCC | 2 cut(s) | 338, 380 |
| BspQI | GCTCTTC | 1 cut(s) | 483 |
| BsrI | ACTGG | 1 cut(s) | 182 |
| BssECI | CCNNGG | 4 cut(s) | 61, 339, 407, 438 |
| BssT1I | CCWWGG | 4 cut(s) | 61, 339, 407, 438 |
| Bst6I | CTCTTC | 1 cut(s) | 483 |
| BstC8I | GCNNGC | 1 cut(s) | 378 |
| BstF5I | GGATG | 6 cut(s) | 165, 231, 248, 277, 406, 460 |
| BstMAI | GTCTC | 1 cut(s) | 377 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 341, 401 |
| BstV1I | GCAGC | 2 cut(s) | 213, 485 |
| BstV2I | GAAGAC | 1 cut(s) | 59 |
| BsuRI | GGCC | 2 cut(s) | 338, 380 |
| BtsCI | GGATG | 6 cut(s) | 165, 231, 248, 277, 406, 460 |
| BtsIMutI | CAGTG | 1 cut(s) | 175 |
| Cac8I | GCNNGC | 1 cut(s) | 378 |
| CviAII | CATG | 2 cut(s) | 182, 353 |
| CviJI | RGCY | 9 cut(s) | 17, 204, 232, 266, 338, 380, 395, 437, 476 |
| CviKI_1 | RGCY | 9 cut(s) | 17, 204, 232, 266, 338, 380, 395, 437, 476 |
| EaeI | YGGCCR | 1 cut(s) | 378 |
| Eam1104I | CTCTTC | 1 cut(s) | 483 |
| EarI | CTCTTC | 1 cut(s) | 483 |
| Eco130I | CCWWGG | 4 cut(s) | 61, 339, 407, 438 |
| EcoRI | GAATTC | 1 cut(s) | 167 |
| EcoT14I | CCWWGG | 4 cut(s) | 61, 339, 407, 438 |
| ErhI | CCWWGG | 4 cut(s) | 61, 339, 407, 438 |
| FaeI | CATG | 2 cut(s) | 185, 356 |
| FaiI | YATR | 4 cut(s) | 80, 183, 354, 389 |
| FatI | CATG | 2 cut(s) | 181, 352 |
| Fnu4HI | GCNGC | 3 cut(s) | 202, 336, 474 |
| FokI | GGATG | 6 cut(s) | 172, 238, 255, 284, 413, 467 |
| Fsp4HI | GCNGC | 3 cut(s) | 202, 336, 474 |
| FspBI | CTAG | 1 cut(s) | 396 |
| GluI | GCNGC | 3 cut(s) | 202, 336, 474 |
| GsaI | CCCAGC | 1 cut(s) | 236 |
| HaeIII | GGCC | 2 cut(s) | 338, 380 |
| Hin1II | CATG | 2 cut(s) | 185, 356 |
| HinfI | GANTC | 1 cut(s) | 307 |
| HphI | GGTGA | 3 cut(s) | 41, 316, 335 |
| Hpy188I | TCNGA | 1 cut(s) | 312 |
| Hpy188III | TCNNGA | 1 cut(s) | 39 |
| HpyAV | CCTTC | 3 cut(s) | 83, 233, 375 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 341, 401 |
| Hsp92II | CATG | 2 cut(s) | 185, 356 |
| LguI | GCTCTTC | 1 cut(s) | 483 |
| LmnI | GCTCC | 1 cut(s) | 409 |
| LpnPI | CCDG | 4 cut(s) | 163, 218, 362, 470 |
| Lsp1109I | GCAGC | 2 cut(s) | 213, 485 |
| LweI | GCATC | 3 cut(s) | 346, 391, 445 |
| MaeI | CTAG | 1 cut(s) | 396 |
| MaeIII | GTNAC | 1 cut(s) | 459 |
| MboII | GAAGA | 2 cut(s) | 59, 470 |
| MluCI | AATT | 4 cut(s) | 150, 167, 253, 428 |
| MmeI | TCCRAC | 2 cut(s) | 137, 196 |
| MnlI | CCTC | 2 cut(s) | 342, 381 |
| MroXI | GAANNNNTTC | 1 cut(s) | 167 |
| MseI | TTAA | 1 cut(s) | 493 |
| MslI | CAYNNNNRTG | 2 cut(s) | 180, 299 |
| MspA1I | CMGCKG | 1 cut(s) | 204 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 341, 401 |
| NlaIII | CATG | 2 cut(s) | 185, 356 |
| NmeAIII | GCCGAG | 1 cut(s) | 406 |
| PciSI | GCTCTTC | 1 cut(s) | 483 |
| PdmI | GAANNNNTTC | 1 cut(s) | 167 |
| PfeI | GAWTC | 1 cut(s) | 307 |
| PkrI | GCNGC | 3 cut(s) | 203, 337, 475 |
| PspFI | CCCAGC | 1 cut(s) | 232 |
| PvuII | CAGCTG | 1 cut(s) | 204 |
| RseI | CAYNNNNRTG | 2 cut(s) | 180, 299 |
| SapI | GCTCTTC | 1 cut(s) | 483 |
| SaqAI | TTAA | 1 cut(s) | 493 |
| SatI | GCNGC | 3 cut(s) | 202, 336, 474 |
| SetI | ASST | 6 cut(s) | 19, 31, 206, 234, 397, 478 |
| SfaNI | GCATC | 3 cut(s) | 346, 391, 445 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 180, 299 |
| Sse9I | AATT | 4 cut(s) | 150, 167, 253, 428 |
| SsiI | CCGC | 1 cut(s) | 335 |
| SspMI | CTAG | 1 cut(s) | 396 |
| StyI | CCWWGG | 4 cut(s) | 61, 339, 407, 438 |
| TaqI | TCGA | 2 cut(s) | 51, 123 |
| TasI | AATT | 4 cut(s) | 150, 167, 253, 428 |
| TauI | GCSGC | 1 cut(s) | 338 |
| TfiI | GAWTC | 1 cut(s) | 307 |
| Tru1I | TTAA | 1 cut(s) | 493 |
| Tru9I | TTAA | 1 cut(s) | 493 |
| TscAI | CASTG | 1 cut(s) | 182 |
| TseI | GCWGC | 2 cut(s) | 201, 473 |
| TspDTI | ATGAA | 4 cut(s) | 176, 207, 242, 288 |
| TspGWI | ACGGA | 1 cut(s) | 146 |
| TspRI | CASTG | 1 cut(s) | 182 |
| XapI | RAATTY | 1 cut(s) | 167 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 179 |
| XmnI | GAANNNNTTC | 1 cut(s) | 167 |
| XspI | CTAG | 1 cut(s) | 396 |