ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 188 |
| AccB1I | GGYRCC | 1 cut(s) | 188 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 796 |
| AciI | CCGC | 2 cut(s) | 186, 767 |
| AclWI | GGATC | 1 cut(s) | 483 |
| AcoI | YGGCCR | 1 cut(s) | 621 |
| AcsI | RAATTY | 2 cut(s) | 429, 449 |
| AfaI | GTAC | 2 cut(s) | 190, 227 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 241, 523, 796 |
| AgsI | TTSAA | 8 cut(s) | 116, 139, 240, 275, 562, 634, 755, 787 |
| AjnI | CCWGG | 2 cut(s) | 191, 497 |
| AluBI | AGCT | 4 cut(s) | 167, 396, 556, 722 |
| AluI | AGCT | 4 cut(s) | 167, 396, 556, 722 |
| Alw21I | GWGCWC | 1 cut(s) | 443 |
| Alw44I | GTGCAC | 1 cut(s) | 439 |
| AlwI | GGATC | 1 cut(s) | 483 |
| AoxI | GGCC | 2 cut(s) | 232, 621 |
| ApaLI | GTGCAC | 1 cut(s) | 439 |
| ApeKI | GCWGC | 1 cut(s) | 779 |
| ApoI | RAATTY | 2 cut(s) | 429, 449 |
| Asp718I | GGTACC | 1 cut(s) | 188 |
| AspA2I | CCTAGG | 1 cut(s) | 229 |
| AsuHPI | GGTGA | 4 cut(s) | 473, 668, 698, 719 |
| AsuNHI | GCTAGC | 1 cut(s) | 718 |
| AvrII | CCTAGG | 1 cut(s) | 229 |
| BaeGI | GKGCMC | 2 cut(s) | 443, 517 |
| BalI | TGGCCA | 1 cut(s) | 623 |
| BanI | GGYRCC | 1 cut(s) | 188 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 626, 658 |
| BbsI | GAAGAC | 1 cut(s) | 296 |
| Bbv12I | GWGCWC | 1 cut(s) | 443 |
| BbvI | GCAGC | 1 cut(s) | 766 |
| BccI | CCATC | 1 cut(s) | 647 |
| BceAI | ACGGC | 1 cut(s) | 459 |
| BciT130I | CCWGG | 2 cut(s) | 193, 499 |
| BclI | TGATCA | 1 cut(s) | 354 |
| BfaI | CTAG | 5 cut(s) | 230, 294, 575, 672, 719 |
| BfmI | CTRYAG | 1 cut(s) | 700 |
| BglII | AGATCT | 1 cut(s) | 568 |
| BisI | GCNGC | 1 cut(s) | 780 |
| BlnI | CCTAGG | 1 cut(s) | 229 |
| BlsI | GCNGC | 1 cut(s) | 781 |
| Bme1390I | CCNGG | 2 cut(s) | 193, 499 |
| BmiI | GGNNCC | 1 cut(s) | 190 |
| BmrFI | CCNGG | 2 cut(s) | 193, 499 |
| BmsI | GCATC | 1 cut(s) | 46 |
| BmtI | GCTAGC | 1 cut(s) | 722 |
| BpiI | GAAGAC | 1 cut(s) | 296 |
| BplI | GAGNNNNNCTC | 3 cut(s) | 43, 75, 791 |
| BsaJI | CCNNGG | 4 cut(s) | 229, 498, 682, 730 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 241, 523, 796 |
| BseBI | CCWGG | 2 cut(s) | 193, 499 |
| BseDI | CCNNGG | 4 cut(s) | 229, 498, 682, 730 |
| BseGI | GGATG | 3 cut(s) | 658, 660, 808 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 241, 523, 796 |
| BseMII | CTCAG | 1 cut(s) | 320 |
| BseRI | GAGGAG | 1 cut(s) | 51 |
| BseSI | GKGCMC | 2 cut(s) | 443, 517 |
| BseXI | GCAGC | 1 cut(s) | 766 |
| BshFI | GGCC | 2 cut(s) | 234, 623 |
| BshNI | GGYRCC | 1 cut(s) | 188 |
| BsiHKAI | GWGCWC | 1 cut(s) | 443 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 241, 523, 796 |
| BsmI | GAATGC | 2 cut(s) | 673, 677 |
| BsnI | GGCC | 2 cut(s) | 234, 623 |
| Bsp1286I | GDGCHC | 2 cut(s) | 443, 517 |
| Bsp143I | GATC | 3 cut(s) | 354, 475, 568 |
| Bsp19I | CCATGG | 1 cut(s) | 682 |
| BspACI | CCGC | 2 cut(s) | 186, 767 |
| BspANI | GGCC | 2 cut(s) | 234, 623 |
| BspCNI | CTCAG | 1 cut(s) | 321 |
| BspHI | TCATGA | 2 cut(s) | 105, 607 |
| BspLI | GGNNCC | 1 cut(s) | 190 |
| BspMAI | CTGCAG | 1 cut(s) | 704 |
| BspOI | GCTAGC | 1 cut(s) | 722 |
| BspPI | GGATC | 1 cut(s) | 483 |
| BspT107I | GGYRCC | 1 cut(s) | 188 |
| BssECI | CCNNGG | 4 cut(s) | 229, 498, 682, 730 |
| BssMI | GATC | 3 cut(s) | 354, 475, 568 |
| BssT1I | CCWWGG | 3 cut(s) | 229, 682, 730 |
| Bst2UI | CCWGG | 2 cut(s) | 193, 499 |
| Bst6I | CTCTTC | 1 cut(s) | 169 |
| BstC8I | GCNNGC | 1 cut(s) | 720 |
| BstDEI | CTNAG | 2 cut(s) | 329, 599 |
| BstDSI | CCRYGG | 1 cut(s) | 682 |
| BstF5I | GGATG | 3 cut(s) | 658, 660, 808 |
| BstKTI | GATC | 3 cut(s) | 357, 478, 571 |
| BstMBI | GATC | 3 cut(s) | 354, 475, 568 |
| BstNI | CCWGG | 2 cut(s) | 193, 499 |
| BstSCI | CCNGG | 2 cut(s) | 191, 497 |
| BstSFI | CTRYAG | 1 cut(s) | 700 |
| BstSLI | GKGCMC | 2 cut(s) | 443, 517 |
| BstV1I | GCAGC | 1 cut(s) | 766 |
| BstV2I | GAAGAC | 1 cut(s) | 296 |
| BstX2I | RGATCY | 1 cut(s) | 568 |
| BstYI | RGATCY | 1 cut(s) | 568 |
| BsuRI | GGCC | 2 cut(s) | 234, 623 |
| BtgI | CCRYGG | 1 cut(s) | 682 |
| BtsCI | GGATG | 3 cut(s) | 658, 660, 808 |
| Cac8I | GCNNGC | 1 cut(s) | 720 |
| CciI | TCATGA | 2 cut(s) | 105, 607 |
| CsiI | ACCWGGT | 1 cut(s) | 191 |
| Csp6I | GTAC | 2 cut(s) | 189, 226 |
| CviAII | CATG | 6 cut(s) | 35, 106, 218, 550, 608, 683 |
| CviJI | RGCY | 8 cut(s) | 167, 234, 269, 396, 493, 556, 623, 722 |
| CviKI_1 | RGCY | 8 cut(s) | 167, 234, 269, 396, 493, 556, 623, 722 |
| CviQI | GTAC | 2 cut(s) | 189, 226 |
| DdeI | CTNAG | 2 cut(s) | 329, 599 |
| DpnI | GATC | 3 cut(s) | 356, 477, 570 |
| DpnII | GATC | 3 cut(s) | 354, 475, 568 |
| DraI | TTTAAA | 1 cut(s) | 403 |
| EaeI | YGGCCR | 1 cut(s) | 621 |
| Eam1104I | CTCTTC | 1 cut(s) | 169 |
| EarI | CTCTTC | 1 cut(s) | 169 |
| Eco130I | CCWWGG | 3 cut(s) | 229, 682, 730 |
| Eco147I | AGGCCT | 1 cut(s) | 234 |
| Eco32I | GATATC | 1 cut(s) | 605 |
| EcoRII | CCWGG | 2 cut(s) | 191, 497 |
| EcoRV | GATATC | 1 cut(s) | 605 |
| EcoT14I | CCWWGG | 3 cut(s) | 229, 682, 730 |
| ErhI | CCWWGG | 3 cut(s) | 229, 682, 730 |
| FaeI | CATG | 6 cut(s) | 38, 109, 221, 553, 611, 686 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 131, 163 |
| FatI | CATG | 6 cut(s) | 34, 105, 217, 549, 607, 682 |
| FbaI | TGATCA | 1 cut(s) | 354 |
| Fnu4HI | GCNGC | 1 cut(s) | 780 |
| FokI | GGATG | 3 cut(s) | 647, 665, 815 |
| Fsp4HI | GCNGC | 1 cut(s) | 780 |
| FspBI | CTAG | 5 cut(s) | 230, 294, 575, 672, 719 |
| GluI | GCNGC | 1 cut(s) | 780 |
| HaeIII | GGCC | 2 cut(s) | 234, 623 |
| Hin1II | CATG | 6 cut(s) | 38, 109, 221, 553, 611, 686 |
| HindIII | AAGCTT | 1 cut(s) | 165 |
| HinfI | GANTC | 4 cut(s) | 92, 484, 611, 806 |
| HphI | GGTGA | 4 cut(s) | 473, 668, 698, 719 |
| Hpy166II | GTNNAC | 2 cut(s) | 211, 441 |
| Hpy188I | TCNGA | 2 cut(s) | 426, 811 |
| Hpy188III | TCNNGA | 5 cut(s) | 106, 171, 608, 650, 664 |
| Hpy8I | GTNNAC | 2 cut(s) | 211, 441 |
| HpyAV | CCTTC | 6 cut(s) | 4, 256, 466, 521, 628, 733 |
| HpyCH4V | TGCA | 5 cut(s) | 151, 284, 307, 441, 702 |
| HpyF3I | CTNAG | 2 cut(s) | 329, 599 |
| Hsp92II | CATG | 6 cut(s) | 38, 109, 221, 553, 611, 686 |
| KpnI | GGTACC | 1 cut(s) | 192 |
| Ksp22I | TGATCA | 1 cut(s) | 354 |
| Kzo9I | GATC | 3 cut(s) | 354, 475, 568 |
| LmnI | GCTCC | 2 cut(s) | 64, 553 |
| LpnPI | CCDG | 9 cut(s) | 178, 205, 324, 439, 484, 511, 521, 635, 677 |
| Lsp1109I | GCAGC | 1 cut(s) | 766 |
| LweI | GCATC | 1 cut(s) | 46 |
| MabI | ACCWGGT | 1 cut(s) | 191 |
| MaeI | CTAG | 5 cut(s) | 230, 294, 575, 672, 719 |
| MaeIII | GTNAC | 2 cut(s) | 545, 656 |
| MalI | GATC | 3 cut(s) | 356, 477, 570 |
| MboI | GATC | 3 cut(s) | 354, 475, 568 |
| MboII | GAAGA | 5 cut(s) | 29, 94, 151, 186, 301 |
| MflI | RGATCY | 1 cut(s) | 568 |
| MhlI | GDGCHC | 2 cut(s) | 443, 517 |
| MlsI | TGGCCA | 1 cut(s) | 623 |
| MluCI | AATT | 6 cut(s) | 133, 275, 404, 429, 449, 750 |
| MluNI | TGGCCA | 1 cut(s) | 623 |
| MlyI | GAGTC | 1 cut(s) | 800 |
| MmeI | TCCRAC | 2 cut(s) | 569, 727 |
| MnlI | CCTC | 9 cut(s) | 72, 115, 154, 259, 517, 688, 736, 793, 805 |
| Mox20I | TGGCCA | 1 cut(s) | 623 |
| MscI | TGGCCA | 1 cut(s) | 623 |
| MseI | TTAA | 2 cut(s) | 5, 402 |
| Msp20I | TGGCCA | 1 cut(s) | 623 |
| MspR9I | CCNGG | 2 cut(s) | 193, 499 |
| Mva1269I | GAATGC | 2 cut(s) | 673, 677 |
| MvaI | CCWGG | 2 cut(s) | 193, 499 |
| NcoI | CCATGG | 1 cut(s) | 682 |
| NdeII | GATC | 3 cut(s) | 354, 475, 568 |
| NheI | GCTAGC | 1 cut(s) | 718 |
| NlaIII | CATG | 6 cut(s) | 38, 109, 221, 553, 611, 686 |
| NlaIV | GGNNCC | 1 cut(s) | 190 |
| NmuCI | GTSAC | 1 cut(s) | 656 |
| PagI | TCATGA | 2 cut(s) | 105, 607 |
| PceI | AGGCCT | 1 cut(s) | 234 |
| PctI | GAATGC | 2 cut(s) | 673, 677 |
| PfeI | GAWTC | 3 cut(s) | 92, 484, 611 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 796 |
| PkrI | GCNGC | 1 cut(s) | 781 |
| PleI | GAGTC | 1 cut(s) | 800 |
| PpsI | GAGTC | 1 cut(s) | 800 |
| Psp6I | CCWGG | 2 cut(s) | 191, 497 |
| PspGI | CCWGG | 2 cut(s) | 191, 497 |
| PspN4I | GGNNCC | 1 cut(s) | 190 |
| PstI | CTGCAG | 1 cut(s) | 704 |
| PsuI | RGATCY | 1 cut(s) | 568 |
| RsaI | GTAC | 2 cut(s) | 190, 227 |
| RsaNI | GTAC | 2 cut(s) | 189, 226 |
| SaqAI | TTAA | 2 cut(s) | 5, 402 |
| SatI | GCNGC | 1 cut(s) | 780 |
| Sau3AI | GATC | 3 cut(s) | 354, 475, 568 |
| SchI | GAGTC | 1 cut(s) | 800 |
| ScrFI | CCNGG | 2 cut(s) | 193, 499 |
| SduI | GDGCHC | 2 cut(s) | 443, 517 |
| SexAI | ACCWGGT | 1 cut(s) | 191 |
| SfaNI | GCATC | 1 cut(s) | 46 |
| SfcI | CTRYAG | 1 cut(s) | 700 |
| Sse9I | AATT | 6 cut(s) | 133, 275, 404, 429, 449, 750 |
| SseBI | AGGCCT | 1 cut(s) | 234 |
| SsiI | CCGC | 2 cut(s) | 186, 767 |
| SspMI | CTAG | 5 cut(s) | 230, 294, 575, 672, 719 |
| StuI | AGGCCT | 1 cut(s) | 234 |
| StyD4I | CCNGG | 2 cut(s) | 191, 497 |
| StyI | CCWWGG | 3 cut(s) | 229, 682, 730 |
| TasI | AATT | 6 cut(s) | 133, 275, 404, 429, 449, 750 |
| TfiI | GAWTC | 3 cut(s) | 92, 484, 611 |
| Tru1I | TTAA | 2 cut(s) | 5, 402 |
| Tru9I | TTAA | 2 cut(s) | 5, 402 |
| TseFI | GTSAC | 1 cut(s) | 656 |
| TseI | GCWGC | 1 cut(s) | 779 |
| Tsp45I | GTSAC | 1 cut(s) | 656 |
| TspDTI | ATGAA | 5 cut(s) | 94, 122, 422, 476, 603 |
| TspGWI | ACGGA | 1 cut(s) | 257 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 796 |
| VneI | GTGCAC | 1 cut(s) | 439 |
| XapI | RAATTY | 2 cut(s) | 429, 449 |
| XmaJI | CCTAGG | 1 cut(s) | 229 |
| XspI | CTAG | 5 cut(s) | 230, 294, 575, 672, 719 |