ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 12 - 80 | 3.2e-12 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 25 |
| AccI | GTMKAC | 1 cut(s) | 65 |
| AccII | CGCG | 1 cut(s) | 40 |
| AcoI | YGGCCR | 1 cut(s) | 84 |
| AcsI | RAATTY | 1 cut(s) | 90 |
| AfaI | GTAC | 3 cut(s) | 18, 75, 82 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 261 |
| AgsI | TTSAA | 2 cut(s) | 112, 209 |
| AjnI | CCWGG | 2 cut(s) | 76, 293 |
| AluBI | AGCT | 1 cut(s) | 58 |
| AluI | AGCT | 1 cut(s) | 58 |
| AoxI | GGCC | 1 cut(s) | 84 |
| ApeKI | GCWGC | 1 cut(s) | 290 |
| ApoI | RAATTY | 1 cut(s) | 90 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 57, 90 |
| BanI | GGYRCC | 1 cut(s) | 25 |
| BbvI | GCAGC | 1 cut(s) | 277 |
| BccI | CCATC | 1 cut(s) | 292 |
| BceAI | ACGGC | 2 cut(s) | 99, 239 |
| BciT130I | CCWGG | 2 cut(s) | 78, 295 |
| BfmI | CTRYAG | 1 cut(s) | 129 |
| BisI | GCNGC | 1 cut(s) | 291 |
| BlsI | GCNGC | 1 cut(s) | 292 |
| Bme1390I | CCNGG | 2 cut(s) | 78, 295 |
| BmiI | GGNNCC | 1 cut(s) | 27 |
| BmrFI | CCNGG | 2 cut(s) | 78, 295 |
| BmsI | GCATC | 1 cut(s) | 241 |
| BpmI | CTGGAG | 1 cut(s) | 182 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 261 |
| BseBI | CCWGG | 2 cut(s) | 78, 295 |
| BseGI | GGATG | 2 cut(s) | 256, 303 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 261 |
| BseXI | GCAGC | 1 cut(s) | 277 |
| Bsh1236I | CGCG | 1 cut(s) | 40 |
| BshFI | GGCC | 1 cut(s) | 86 |
| BshNI | GGYRCC | 1 cut(s) | 25 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 261 |
| BsnI | GGCC | 1 cut(s) | 86 |
| BspANI | GGCC | 1 cut(s) | 86 |
| BspFNI | CGCG | 1 cut(s) | 40 |
| BspLI | GGNNCC | 1 cut(s) | 27 |
| BspT107I | GGYRCC | 1 cut(s) | 25 |
| Bst2UI | CCWGG | 2 cut(s) | 78, 295 |
| Bst6I | CTCTTC | 1 cut(s) | 289 |
| BstF5I | GGATG | 2 cut(s) | 256, 303 |
| BstFNI | CGCG | 1 cut(s) | 40 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 275 |
| BstNI | CCWGG | 2 cut(s) | 78, 295 |
| BstSCI | CCNGG | 2 cut(s) | 76, 293 |
| BstSFI | CTRYAG | 1 cut(s) | 129 |
| BstUI | CGCG | 1 cut(s) | 40 |
| BstV1I | GCAGC | 1 cut(s) | 277 |
| BsuRI | GGCC | 1 cut(s) | 86 |
| BtsCI | GGATG | 2 cut(s) | 256, 303 |
| CseI | GACGC | 1 cut(s) | 46 |
| CsiI | ACCWGGT | 1 cut(s) | 76 |
| Csp6I | GTAC | 3 cut(s) | 17, 74, 81 |
| CviJI | RGCY | 4 cut(s) | 58, 86, 223, 278 |
| CviKI_1 | RGCY | 4 cut(s) | 58, 86, 223, 278 |
| CviQI | GTAC | 3 cut(s) | 17, 74, 81 |
| EaeI | YGGCCR | 1 cut(s) | 84 |
| Eam1104I | CTCTTC | 1 cut(s) | 289 |
| EarI | CTCTTC | 1 cut(s) | 289 |
| EcoRII | CCWGG | 2 cut(s) | 76, 293 |
| FaiI | YATR | 9 cut(s) | 49, 61, 100, 131, 184, 213, 215, 217, 234 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 262, 294 |
| FblI | GTMKAC | 1 cut(s) | 65 |
| Fnu4HI | GCNGC | 1 cut(s) | 291 |
| FokI | GGATG | 1 cut(s) | 263 |
| Fsp4HI | GCNGC | 1 cut(s) | 291 |
| GluI | GCNGC | 1 cut(s) | 291 |
| GsuI | CTGGAG | 1 cut(s) | 182 |
| HaeIII | GGCC | 1 cut(s) | 86 |
| HgaI | GACGC | 1 cut(s) | 46 |
| HinfI | GANTC | 1 cut(s) | 243 |
| Hpy166II | GTNNAC | 2 cut(s) | 66, 122 |
| Hpy188III | TCNNGA | 1 cut(s) | 161 |
| Hpy8I | GTNNAC | 2 cut(s) | 66, 122 |
| HpyAV | CCTTC | 1 cut(s) | 97 |
| HpyCH4V | TGCA | 1 cut(s) | 34 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 275 |
| LpnPI | CCDG | 7 cut(s) | 63, 90, 137, 146, 223, 246, 280 |
| Lsp1109I | GCAGC | 1 cut(s) | 277 |
| LweI | GCATC | 1 cut(s) | 241 |
| MabI | ACCWGGT | 1 cut(s) | 76 |
| MboII | GAAGA | 2 cut(s) | 149, 276 |
| MfeI | CAATTG | 2 cut(s) | 115, 204 |
| MluCI | AATT | 3 cut(s) | 90, 115, 204 |
| MlyI | GAGTC | 1 cut(s) | 252 |
| MnlI | CCTC | 1 cut(s) | 16 |
| MspR9I | CCNGG | 2 cut(s) | 78, 295 |
| MunI | CAATTG | 2 cut(s) | 115, 204 |
| MvaI | CCWGG | 2 cut(s) | 78, 295 |
| MvnI | CGCG | 1 cut(s) | 40 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 275 |
| NlaIV | GGNNCC | 1 cut(s) | 27 |
| PkrI | GCNGC | 1 cut(s) | 292 |
| PleI | GAGTC | 1 cut(s) | 251 |
| PpsI | GAGTC | 1 cut(s) | 251 |
| Psp6I | CCWGG | 2 cut(s) | 76, 293 |
| PspGI | CCWGG | 2 cut(s) | 76, 293 |
| PspN4I | GGNNCC | 1 cut(s) | 27 |
| RsaI | GTAC | 3 cut(s) | 18, 75, 82 |
| RsaNI | GTAC | 3 cut(s) | 17, 74, 81 |
| SatI | GCNGC | 1 cut(s) | 291 |
| SchI | GAGTC | 1 cut(s) | 252 |
| ScrFI | CCNGG | 2 cut(s) | 78, 295 |
| SetI | ASST | 8 cut(s) | 27, 60, 82, 108, 127, 156, 175, 275 |
| SexAI | ACCWGGT | 1 cut(s) | 76 |
| SfaNI | GCATC | 1 cut(s) | 241 |
| SfcI | CTRYAG | 1 cut(s) | 129 |
| Sse9I | AATT | 3 cut(s) | 90, 115, 204 |
| StyD4I | CCNGG | 2 cut(s) | 76, 293 |
| TasI | AATT | 3 cut(s) | 90, 115, 204 |
| TatI | WGTACW | 1 cut(s) | 16 |
| TseI | GCWGC | 1 cut(s) | 290 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| XapI | RAATTY | 1 cut(s) | 90 |
| XmiI | GTMKAC | 1 cut(s) | 65 |