ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 252 |
| AccI | GTMKAC | 1 cut(s) | 490 |
| AclI | AACGTT | 1 cut(s) | 392 |
| AclWI | GGATC | 1 cut(s) | 411 |
| AcoI | YGGCCR | 1 cut(s) | 85 |
| AcyI | GRCGYC | 1 cut(s) | 80 |
| AfaI | GTAC | 1 cut(s) | 222 |
| AflII | CTTAAG | 1 cut(s) | 50 |
| AgsI | TTSAA | 3 cut(s) | 35, 538, 578 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 495, 527, 635, 667 |
| AluBI | AGCT | 2 cut(s) | 554, 588 |
| AluI | AGCT | 2 cut(s) | 554, 588 |
| Alw26I | GTCTC | 2 cut(s) | 354, 664 |
| AlwI | GGATC | 1 cut(s) | 411 |
| Ama87I | CYCGRG | 1 cut(s) | 180 |
| AoxI | GGCC | 2 cut(s) | 85, 508 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 374 |
| AspLEI | GCGC | 2 cut(s) | 253, 311 |
| AspS9I | GGNCC | 2 cut(s) | 145, 508 |
| AsuHPI | GGTGA | 1 cut(s) | 449 |
| AvaI | CYCGRG | 1 cut(s) | 180 |
| AvaII | GGWCC | 1 cut(s) | 145 |
| BalI | TGGCCA | 1 cut(s) | 87 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 307, 341 |
| BcoDI | GTCTC | 2 cut(s) | 354, 664 |
| BfaI | CTAG | 2 cut(s) | 453, 551 |
| BfmI | CTRYAG | 1 cut(s) | 216 |
| BfrI | CTTAAG | 1 cut(s) | 50 |
| BmcAI | AGTACT | 1 cut(s) | 222 |
| Bme18I | GGWCC | 1 cut(s) | 145 |
| BmeT110I | CYCGRG | 1 cut(s) | 180 |
| BmgT120I | GGNCC | 2 cut(s) | 145, 508 |
| BmiI | GGNNCC | 1 cut(s) | 509 |
| BmsI | GCATC | 2 cut(s) | 102, 605 |
| BsaHI | GRCGYC | 1 cut(s) | 80 |
| BsaJI | CCNNGG | 1 cut(s) | 511 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 470, 500 |
| Bse1I | ACTGG | 1 cut(s) | 154 |
| BseDI | CCNNGG | 1 cut(s) | 511 |
| BseGI | GGATG | 2 cut(s) | 233, 596 |
| BseNI | ACTGG | 1 cut(s) | 154 |
| Bsh1285I | CGRYCG | 1 cut(s) | 494 |
| BshFI | GGCC | 2 cut(s) | 87, 510 |
| BsiEI | CGRYCG | 1 cut(s) | 494 |
| BsiHKCI | CYCGRG | 1 cut(s) | 180 |
| BsmAI | GTCTC | 2 cut(s) | 354, 664 |
| BsmI | GAATGC | 1 cut(s) | 649 |
| BsnI | GGCC | 2 cut(s) | 87, 510 |
| BsoBI | CYCGRG | 1 cut(s) | 180 |
| Bsp143I | GATC | 2 cut(s) | 262, 403 |
| BspANI | GGCC | 2 cut(s) | 87, 510 |
| BspHI | TCATGA | 1 cut(s) | 193 |
| BspLI | GGNNCC | 1 cut(s) | 509 |
| BspPI | GGATC | 1 cut(s) | 411 |
| BspQI | GCTCTTC | 1 cut(s) | 552 |
| BspTI | CTTAAG | 1 cut(s) | 50 |
| BsrI | ACTGG | 1 cut(s) | 154 |
| BssECI | CCNNGG | 1 cut(s) | 511 |
| BssMI | GATC | 2 cut(s) | 262, 403 |
| BssNI | GRCGYC | 1 cut(s) | 80 |
| BssT1I | CCWWGG | 1 cut(s) | 511 |
| Bst6I | CTCTTC | 1 cut(s) | 552 |
| BstACI | GRCGYC | 1 cut(s) | 80 |
| BstAFI | CTTAAG | 1 cut(s) | 50 |
| BstF5I | GGATG | 2 cut(s) | 233, 596 |
| BstHHI | GCGC | 2 cut(s) | 253, 311 |
| BstKTI | GATC | 2 cut(s) | 265, 406 |
| BstMAI | GTCTC | 2 cut(s) | 354, 664 |
| BstMBI | GATC | 2 cut(s) | 262, 403 |
| BstMCI | CGRYCG | 1 cut(s) | 494 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 315, 551 |
| BstSFI | CTRYAG | 1 cut(s) | 216 |
| BstX2I | RGATCY | 1 cut(s) | 403 |
| BstYI | RGATCY | 1 cut(s) | 403 |
| BsuRI | GGCC | 2 cut(s) | 87, 510 |
| BtsCI | GGATG | 2 cut(s) | 233, 596 |
| CciI | TCATGA | 1 cut(s) | 193 |
| CfoI | GCGC | 2 cut(s) | 253, 311 |
| Cfr13I | GGNCC | 2 cut(s) | 145, 508 |
| CseI | GACGC | 1 cut(s) | 69 |
| Csp6I | GTAC | 1 cut(s) | 221 |
| CviAII | CATG | 3 cut(s) | 194, 474, 560 |
| CviJI | RGCY | 8 cut(s) | 26, 87, 126, 211, 469, 510, 554, 588 |
| CviKI_1 | RGCY | 8 cut(s) | 26, 87, 126, 211, 469, 510, 554, 588 |
| CviQI | GTAC | 1 cut(s) | 221 |
| DpnI | GATC | 2 cut(s) | 264, 405 |
| DpnII | GATC | 2 cut(s) | 262, 403 |
| EaeI | YGGCCR | 1 cut(s) | 85 |
| Eam1104I | CTCTTC | 1 cut(s) | 552 |
| EarI | CTCTTC | 1 cut(s) | 552 |
| Eco130I | CCWWGG | 1 cut(s) | 511 |
| Eco47I | GGWCC | 1 cut(s) | 145 |
| Eco88I | CYCGRG | 1 cut(s) | 180 |
| EcoO109I | RGGNCCY | 1 cut(s) | 508 |
| EcoT14I | CCWWGG | 1 cut(s) | 511 |
| EcoT22I | ATGCAT | 1 cut(s) | 95 |
| ErhI | CCWWGG | 1 cut(s) | 511 |
| FaeI | CATG | 3 cut(s) | 197, 477, 563 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 495, 527, 608, 640 |
| FatI | CATG | 3 cut(s) | 193, 473, 559 |
| FblI | GTMKAC | 1 cut(s) | 490 |
| FokI | GGATG | 2 cut(s) | 240, 583 |
| FspBI | CTAG | 2 cut(s) | 453, 551 |
| FspI | TGCGCA | 1 cut(s) | 252 |
| GlaI | GCGC | 2 cut(s) | 252, 310 |
| HaeIII | GGCC | 2 cut(s) | 87, 510 |
| HgaI | GACGC | 1 cut(s) | 69 |
| HhaI | GCGC | 2 cut(s) | 253, 311 |
| Hin1I | GRCGYC | 1 cut(s) | 80 |
| Hin1II | CATG | 3 cut(s) | 197, 477, 563 |
| Hin6I | GCGC | 2 cut(s) | 251, 309 |
| HinP1I | GCGC | 2 cut(s) | 251, 309 |
| HincII | GTYRAC | 1 cut(s) | 491 |
| HindII | GTYRAC | 1 cut(s) | 491 |
| HinfI | GANTC | 2 cut(s) | 446, 657 |
| HphI | GGTGA | 1 cut(s) | 449 |
| Hpy166II | GTNNAC | 2 cut(s) | 233, 491 |
| Hpy188I | TCNGA | 1 cut(s) | 241 |
| Hpy188III | TCNNGA | 2 cut(s) | 194, 640 |
| Hpy8I | GTNNAC | 2 cut(s) | 233, 491 |
| HpyAV | CCTTC | 4 cut(s) | 286, 392, 493, 497 |
| HpyCH4IV | ACGT | 1 cut(s) | 392 |
| HpyCH4V | TGCA | 4 cut(s) | 93, 409, 628, 647 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 315, 551 |
| HpySE526I | ACGT | 1 cut(s) | 392 |
| Hsp92I | GRCGYC | 1 cut(s) | 80 |
| Hsp92II | CATG | 3 cut(s) | 197, 477, 563 |
| HspAI | GCGC | 2 cut(s) | 251, 309 |
| Kzo9I | GATC | 2 cut(s) | 262, 403 |
| LguI | GCTCTTC | 1 cut(s) | 552 |
| LpnPI | CCDG | 5 cut(s) | 69, 167, 578, 613, 625 |
| LweI | GCATC | 2 cut(s) | 102, 605 |
| MaeI | CTAG | 2 cut(s) | 453, 551 |
| MaeII | ACGT | 1 cut(s) | 392 |
| MaeIII | GTNAC | 1 cut(s) | 175 |
| MalI | GATC | 2 cut(s) | 264, 405 |
| MboI | GATC | 2 cut(s) | 262, 403 |
| MboII | GAAGA | 4 cut(s) | 441, 508, 539, 566 |
| MflI | RGATCY | 1 cut(s) | 403 |
| MlsI | TGGCCA | 1 cut(s) | 87 |
| MluCI | AATT | 2 cut(s) | 97, 370 |
| MluNI | TGGCCA | 1 cut(s) | 87 |
| MlyI | GAGTC | 1 cut(s) | 666 |
| MnlI | CCTC | 4 cut(s) | 37, 136, 389, 394 |
| Mox20I | TGGCCA | 1 cut(s) | 87 |
| Mph1103I | ATGCAT | 1 cut(s) | 95 |
| MroXI | GAANNNNTTC | 1 cut(s) | 374 |
| MscI | TGGCCA | 1 cut(s) | 87 |
| MseI | TTAA | 3 cut(s) | 51, 258, 609 |
| MslI | CAYNNNNRTG | 1 cut(s) | 335 |
| Msp20I | TGGCCA | 1 cut(s) | 87 |
| MspCI | CTTAAG | 1 cut(s) | 50 |
| Mva1269I | GAATGC | 1 cut(s) | 649 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 315, 551 |
| NdeII | GATC | 2 cut(s) | 262, 403 |
| NlaIII | CATG | 3 cut(s) | 197, 477, 563 |
| NlaIV | GGNNCC | 1 cut(s) | 509 |
| NsbI | TGCGCA | 1 cut(s) | 252 |
| NsiI | ATGCAT | 1 cut(s) | 95 |
| PagI | TCATGA | 1 cut(s) | 193 |
| PciSI | GCTCTTC | 1 cut(s) | 552 |
| PctI | GAATGC | 1 cut(s) | 649 |
| PdmI | GAANNNNTTC | 1 cut(s) | 374 |
| PfeI | GAWTC | 1 cut(s) | 446 |
| PleI | GAGTC | 1 cut(s) | 665 |
| PpsI | GAGTC | 1 cut(s) | 665 |
| Psp1406I | AACGTT | 1 cut(s) | 392 |
| PspN4I | GGNNCC | 1 cut(s) | 509 |
| PspPI | GGNCC | 2 cut(s) | 145, 508 |
| PsuI | RGATCY | 1 cut(s) | 403 |
| RsaI | GTAC | 1 cut(s) | 222 |
| RsaNI | GTAC | 1 cut(s) | 221 |
| RseI | CAYNNNNRTG | 1 cut(s) | 335 |
| SalI | GTCGAC | 1 cut(s) | 489 |
| SapI | GCTCTTC | 1 cut(s) | 552 |
| SaqAI | TTAA | 3 cut(s) | 51, 258, 609 |
| Sau3AI | GATC | 2 cut(s) | 262, 403 |
| Sau96I | GGNCC | 2 cut(s) | 145, 508 |
| ScaI | AGTACT | 1 cut(s) | 222 |
| SchI | GAGTC | 1 cut(s) | 666 |
| SetI | ASST | 7 cut(s) | 47, 147, 358, 395, 543, 556, 590 |
| SfaNI | GCATC | 2 cut(s) | 102, 605 |
| SfcI | CTRYAG | 1 cut(s) | 216 |
| SinI | GGWCC | 1 cut(s) | 145 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 335 |
| SmlI | CTYRAG | 1 cut(s) | 50 |
| SmoI | CTYRAG | 1 cut(s) | 50 |
| Sse9I | AATT | 2 cut(s) | 97, 370 |
| SspMI | CTAG | 2 cut(s) | 453, 551 |
| StyI | CCWWGG | 1 cut(s) | 511 |
| TaiI | ACGT | 1 cut(s) | 395 |
| TaqI | TCGA | 3 cut(s) | 22, 424, 490 |
| TaqII | GACCGA | 1 cut(s) | 508 |
| TasI | AATT | 2 cut(s) | 97, 370 |
| TatI | WGTACW | 1 cut(s) | 220 |
| TfiI | GAWTC | 1 cut(s) | 446 |
| Tru1I | TTAA | 3 cut(s) | 51, 258, 609 |
| Tru9I | TTAA | 3 cut(s) | 51, 258, 609 |
| TspDTI | ATGAA | 4 cut(s) | 182, 383, 452, 462 |
| Vha464I | CTTAAG | 1 cut(s) | 50 |
| VpaK11BI | GGWCC | 1 cut(s) | 145 |
| XmiI | GTMKAC | 1 cut(s) | 490 |
| XmnI | GAANNNNTTC | 1 cut(s) | 374 |
| XspI | CTAG | 2 cut(s) | 453, 551 |
| ZrmI | AGTACT | 1 cut(s) | 222 |
| Zsp2I | ATGCAT | 1 cut(s) | 95 |