ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Homeodomain | PF00046 | 27 - 89 | 2.3e-09 | Homeodomain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 78 |
| Acc36I | ACCTGC | 2 cut(s) | 78, 160 |
| Acc65I | GGTACC | 1 cut(s) | 335 |
| AccB1I | GGYRCC | 1 cut(s) | 335 |
| AccIII | TCCGGA | 1 cut(s) | 618 |
| AciI | CCGC | 3 cut(s) | 82, 546, 625 |
| AclWI | GGATC | 4 cut(s) | 188, 363, 382, 460 |
| AcuI | CTGAAG | 1 cut(s) | 384 |
| AfaI | GTAC | 2 cut(s) | 203, 337 |
| AgsI | TTSAA | 2 cut(s) | 220, 473 |
| AleI | CACNNNNGTG | 1 cut(s) | 555 |
| AluBI | AGCT | 5 cut(s) | 130, 193, 404, 580, 605 |
| AluI | AGCT | 5 cut(s) | 130, 193, 404, 580, 605 |
| Alw21I | GWGCWC | 1 cut(s) | 582 |
| AlwI | GGATC | 4 cut(s) | 188, 363, 382, 460 |
| Ama87I | CYCGRG | 1 cut(s) | 255 |
| Aor13HI | TCCGGA | 1 cut(s) | 618 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 477 |
| Asp718I | GGTACC | 1 cut(s) | 335 |
| AspS9I | GGNCC | 2 cut(s) | 153, 276 |
| AsuHPI | GGTGA | 1 cut(s) | 512 |
| AvaI | CYCGRG | 1 cut(s) | 255 |
| AvaII | GGWCC | 2 cut(s) | 153, 276 |
| AxyI | CCTNAGG | 1 cut(s) | 351 |
| BaeGI | GKGCMC | 1 cut(s) | 300 |
| BanI | GGYRCC | 1 cut(s) | 335 |
| BanII | GRGCYC | 2 cut(s) | 256, 582 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 353, 385 |
| BbsI | GAAGAC | 1 cut(s) | 530 |
| Bbv12I | GWGCWC | 1 cut(s) | 582 |
| BccI | CCATC | 3 cut(s) | 26, 424, 530 |
| BceAI | ACGGC | 1 cut(s) | 220 |
| BfmI | CTRYAG | 2 cut(s) | 102, 162 |
| BfuAI | ACCTGC | 2 cut(s) | 78, 160 |
| BisI | GCNGC | 1 cut(s) | 625 |
| BlpI | GCTNAGC | 1 cut(s) | 581 |
| BlsI | GCNGC | 1 cut(s) | 626 |
| Bme18I | GGWCC | 2 cut(s) | 153, 276 |
| BmeT110I | CYCGRG | 1 cut(s) | 255 |
| BmgT120I | GGNCC | 2 cut(s) | 153, 276 |
| BmiI | GGNNCC | 4 cut(s) | 6, 155, 337, 623 |
| BmsI | GCATC | 1 cut(s) | 392 |
| BpiI | GAAGAC | 1 cut(s) | 530 |
| BpmI | CTGGAG | 1 cut(s) | 173 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 581 |
| BpuEI | CTTGAG | 2 cut(s) | 107, 596 |
| BsaBI | GATNNNNATC | 1 cut(s) | 116 |
| BsaWI | WCCGGW | 1 cut(s) | 618 |
| Bse21I | CCTNAGG | 1 cut(s) | 351 |
| Bse8I | GATNNNNATC | 1 cut(s) | 116 |
| BseAI | TCCGGA | 1 cut(s) | 618 |
| BseGI | GGATG | 2 cut(s) | 37, 292 |
| BseJI | GATNNNNATC | 1 cut(s) | 116 |
| BseMII | CTCAG | 2 cut(s) | 342, 595 |
| BseSI | GKGCMC | 1 cut(s) | 300 |
| BseYI | CCCAGC | 1 cut(s) | 15 |
| BshNI | GGYRCC | 1 cut(s) | 335 |
| BsiHKAI | GWGCWC | 1 cut(s) | 582 |
| BsiHKCI | CYCGRG | 1 cut(s) | 255 |
| BsiSI | CCGG | 1 cut(s) | 619 |
| BslFI | GGGAC | 1 cut(s) | 139 |
| BsmFI | GGGAC | 1 cut(s) | 139 |
| BsoBI | CYCGRG | 1 cut(s) | 255 |
| Bsp1286I | GDGCHC | 3 cut(s) | 256, 300, 582 |
| Bsp13I | TCCGGA | 1 cut(s) | 618 |
| Bsp143I | GATC | 7 cut(s) | 106, 180, 210, 308, 355, 374, 452 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 581 |
| BspACI | CCGC | 3 cut(s) | 82, 546, 625 |
| BspCNI | CTCAG | 2 cut(s) | 343, 594 |
| BspEI | TCCGGA | 1 cut(s) | 618 |
| BspLI | GGNNCC | 4 cut(s) | 6, 155, 337, 623 |
| BspMI | ACCTGC | 2 cut(s) | 78, 160 |
| BspPI | GGATC | 4 cut(s) | 188, 363, 382, 460 |
| BspT107I | GGYRCC | 1 cut(s) | 335 |
| BssMI | GATC | 7 cut(s) | 106, 180, 210, 308, 355, 374, 452 |
| Bst4CI | ACNGT | 2 cut(s) | 163, 554 |
| Bst6I | CTCTTC | 1 cut(s) | 266 |
| BstDEI | CTNAG | 2 cut(s) | 351, 581 |
| BstF5I | GGATG | 2 cut(s) | 37, 292 |
| BstKTI | GATC | 7 cut(s) | 109, 183, 213, 311, 358, 377, 455 |
| BstMBI | GATC | 7 cut(s) | 106, 180, 210, 308, 355, 374, 452 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 79, 401, 591 |
| BstNSI | RCATGY | 1 cut(s) | 73 |
| BstSFI | CTRYAG | 2 cut(s) | 102, 162 |
| BstSLI | GKGCMC | 1 cut(s) | 300 |
| BstV2I | GAAGAC | 1 cut(s) | 530 |
| BstX2I | RGATCY | 3 cut(s) | 180, 374, 452 |
| BstYI | RGATCY | 3 cut(s) | 180, 374, 452 |
| Bsu36I | CCTNAGG | 1 cut(s) | 351 |
| BtsCI | GGATG | 2 cut(s) | 37, 292 |
| BveI | ACCTGC | 2 cut(s) | 78, 160 |
| Cfr13I | GGNCC | 2 cut(s) | 153, 276 |
| Csp6I | GTAC | 2 cut(s) | 202, 336 |
| CviAII | CATG | 7 cut(s) | 70, 293, 301, 463, 493, 497, 520 |
| CviQI | GTAC | 2 cut(s) | 202, 336 |
| DdeI | CTNAG | 2 cut(s) | 351, 581 |
| DpnI | GATC | 7 cut(s) | 108, 182, 212, 310, 357, 376, 454 |
| DpnII | GATC | 7 cut(s) | 106, 180, 210, 308, 355, 374, 452 |
| Eam1104I | CTCTTC | 1 cut(s) | 266 |
| EarI | CTCTTC | 1 cut(s) | 266 |
| EciI | GGCGGA | 1 cut(s) | 97 |
| Ecl136II | GAGCTC | 1 cut(s) | 580 |
| Eco24I | GRGCYC | 2 cut(s) | 256, 582 |
| Eco47I | GGWCC | 2 cut(s) | 153, 276 |
| Eco53kI | GAGCTC | 1 cut(s) | 580 |
| Eco57I | CTGAAG | 1 cut(s) | 384 |
| Eco81I | CCTNAGG | 1 cut(s) | 351 |
| Eco88I | CYCGRG | 1 cut(s) | 255 |
| EcoICRI | GAGCTC | 1 cut(s) | 580 |
| EcoO109I | RGGNCCY | 1 cut(s) | 153 |
| EcoT22I | ATGCAT | 1 cut(s) | 498 |
| EcoT38I | GRGCYC | 2 cut(s) | 256, 582 |
| FaeI | CATG | 7 cut(s) | 73, 296, 304, 466, 496, 500, 523 |
| FaqI | GGGAC | 1 cut(s) | 139 |
| FatI | CATG | 7 cut(s) | 69, 292, 300, 462, 492, 496, 519 |
| Fnu4HI | GCNGC | 1 cut(s) | 625 |
| FokI | GGATG | 2 cut(s) | 44, 299 |
| FriOI | GRGCYC | 2 cut(s) | 256, 582 |
| Fsp4HI | GCNGC | 1 cut(s) | 625 |
| GluI | GCNGC | 1 cut(s) | 625 |
| GsaI | CCCAGC | 1 cut(s) | 19 |
| GsuI | CTGGAG | 1 cut(s) | 173 |
| HapII | CCGG | 1 cut(s) | 619 |
| Hin1II | CATG | 7 cut(s) | 73, 296, 304, 466, 496, 500, 523 |
| HinfI | GANTC | 3 cut(s) | 51, 94, 117 |
| HpaII | CCGG | 1 cut(s) | 619 |
| HphI | GGTGA | 1 cut(s) | 512 |
| Hpy166II | GTNNAC | 3 cut(s) | 93, 244, 279 |
| Hpy188I | TCNGA | 5 cut(s) | 111, 177, 286, 374, 535 |
| Hpy188III | TCNNGA | 5 cut(s) | 55, 220, 241, 257, 619 |
| Hpy8I | GTNNAC | 3 cut(s) | 93, 244, 279 |
| HpyAV | CCTTC | 1 cut(s) | 488 |
| HpyCH4III | ACNGT | 2 cut(s) | 163, 554 |
| HpyCH4IV | ACGT | 1 cut(s) | 225 |
| HpyCH4V | TGCA | 4 cut(s) | 304, 383, 496, 594 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 79, 401, 591 |
| HpyF3I | CTNAG | 2 cut(s) | 351, 581 |
| HpySE526I | ACGT | 1 cut(s) | 225 |
| Hsp92II | CATG | 7 cut(s) | 73, 296, 304, 466, 496, 500, 523 |
| Kpn2I | TCCGGA | 1 cut(s) | 618 |
| KpnI | GGTACC | 1 cut(s) | 339 |
| Kzo9I | GATC | 7 cut(s) | 106, 180, 210, 308, 355, 374, 452 |
| LmnI | GCTCC | 3 cut(s) | 84, 127, 621 |
| LpnPI | CCDG | 8 cut(s) | 29, 73, 155, 203, 363, 390, 591, 604 |
| LweI | GCATC | 1 cut(s) | 392 |
| MaeII | ACGT | 1 cut(s) | 225 |
| MaeIII | GTNAC | 1 cut(s) | 548 |
| MalI | GATC | 7 cut(s) | 108, 182, 212, 310, 357, 376, 454 |
| MboI | GATC | 7 cut(s) | 106, 180, 210, 308, 355, 374, 452 |
| MboII | GAAGA | 5 cut(s) | 280, 283, 369, 390, 535 |
| MfeI | CAATTG | 1 cut(s) | 340 |
| MflI | RGATCY | 3 cut(s) | 180, 374, 452 |
| MhlI | GDGCHC | 3 cut(s) | 256, 300, 582 |
| MluCI | AATT | 1 cut(s) | 340 |
| MlyI | GAGTC | 2 cut(s) | 60, 88 |
| MnlI | CCTC | 9 cut(s) | 22, 29, 131, 171, 267, 346, 492, 496, 533 |
| Mph1103I | ATGCAT | 1 cut(s) | 498 |
| MroI | TCCGGA | 1 cut(s) | 618 |
| MroXI | GAANNNNTTC | 1 cut(s) | 477 |
| MseI | TTAA | 2 cut(s) | 366, 420 |
| MslI | CAYNNNNRTG | 1 cut(s) | 555 |
| MspA1I | CMGCKG | 3 cut(s) | 193, 404, 627 |
| MspI | CCGG | 1 cut(s) | 619 |
| MunI | CAATTG | 1 cut(s) | 340 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 79, 401, 591 |
| NdeII | GATC | 7 cut(s) | 106, 180, 210, 308, 355, 374, 452 |
| NlaIII | CATG | 7 cut(s) | 73, 296, 304, 466, 496, 500, 523 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 155, 337, 623 |
| NmuCI | GTSAC | 1 cut(s) | 548 |
| NsiI | ATGCAT | 1 cut(s) | 498 |
| NspI | RCATGY | 1 cut(s) | 73 |
| OliI | CACNNNNGTG | 1 cut(s) | 555 |
| PaqCI | CACCTGC | 1 cut(s) | 78 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 210 |
| PdmI | GAANNNNTTC | 1 cut(s) | 477 |
| PfeI | GAWTC | 1 cut(s) | 117 |
| PkrI | GCNGC | 1 cut(s) | 626 |
| PleI | GAGTC | 2 cut(s) | 59, 88 |
| PpsI | GAGTC | 2 cut(s) | 59, 88 |
| PpuMI | RGGWCCY | 1 cut(s) | 153 |
| Psp124BI | GAGCTC | 1 cut(s) | 582 |
| Psp5II | RGGWCCY | 1 cut(s) | 153 |
| PspFI | CCCAGC | 1 cut(s) | 15 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 155, 337, 623 |
| PspPI | GGNCC | 2 cut(s) | 153, 276 |
| PspPPI | RGGWCCY | 1 cut(s) | 153 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 156, 188 |
| PsuI | RGATCY | 3 cut(s) | 180, 374, 452 |
| PvuII | CAGCTG | 2 cut(s) | 193, 404 |
| RsaI | GTAC | 2 cut(s) | 203, 337 |
| RsaNI | GTAC | 2 cut(s) | 202, 336 |
| RseI | CAYNNNNRTG | 1 cut(s) | 555 |
| SacI | GAGCTC | 1 cut(s) | 582 |
| SaqAI | TTAA | 2 cut(s) | 366, 420 |
| SatI | GCNGC | 1 cut(s) | 625 |
| Sau3AI | GATC | 7 cut(s) | 106, 180, 210, 308, 355, 374, 452 |
| Sau96I | GGNCC | 2 cut(s) | 153, 276 |
| SchI | GAGTC | 2 cut(s) | 60, 88 |
| SduI | GDGCHC | 3 cut(s) | 256, 300, 582 |
| SfaNI | GCATC | 1 cut(s) | 392 |
| SfcI | CTRYAG | 2 cut(s) | 102, 162 |
| SinI | GGWCC | 2 cut(s) | 153, 276 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 555 |
| SmlI | CTYRAG | 2 cut(s) | 122, 575 |
| SmoI | CTYRAG | 2 cut(s) | 122, 575 |
| Sse9I | AATT | 1 cut(s) | 340 |
| SsiI | CCGC | 3 cut(s) | 82, 546, 625 |
| SstI | GAGCTC | 1 cut(s) | 582 |
| TaaI | ACNGT | 2 cut(s) | 163, 554 |
| TaiI | ACGT | 1 cut(s) | 228 |
| TaqI | TCGA | 2 cut(s) | 27, 213 |
| TasI | AATT | 1 cut(s) | 340 |
| TauI | GCSGC | 1 cut(s) | 627 |
| TfiI | GAWTC | 1 cut(s) | 117 |
| Tru1I | TTAA | 2 cut(s) | 366, 420 |
| Tru9I | TTAA | 2 cut(s) | 366, 420 |
| TseFI | GTSAC | 1 cut(s) | 548 |
| Tsp45I | GTSAC | 1 cut(s) | 548 |
| TspDTI | ATGAA | 3 cut(s) | 281, 473, 536 |
| VpaK11BI | GGWCC | 2 cut(s) | 153, 276 |
| XceI | RCATGY | 1 cut(s) | 73 |
| XmnI | GAANNNNTTC | 1 cut(s) | 477 |
| Zsp2I | ATGCAT | 1 cut(s) | 498 |