zinc-binding in reverse transcriptase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 767 |
| AccB1I | GGYRCC | 1 cut(s) | 660 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 881 |
| AccIII | TCCGGA | 1 cut(s) | 391 |
| AclWI | GGATC | 3 cut(s) | 821, 1118, 1159 |
| AcsI | RAATTY | 1 cut(s) | 76 |
| AcuI | CTGAAG | 4 cut(s) | 21, 174, 385, 1087 |
| AcvI | CACGTG | 1 cut(s) | 1046 |
| AfaI | GTAC | 1 cut(s) | 545 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 259, 881, 1148 |
| AflIII | ACRYGT | 1 cut(s) | 1045 |
| AgsI | TTSAA | 4 cut(s) | 367, 478, 980, 1169 |
| AjnI | CCWGG | 2 cut(s) | 937, 1081 |
| AluBI | AGCT | 4 cut(s) | 124, 152, 258, 399 |
| AluI | AGCT | 4 cut(s) | 124, 152, 258, 399 |
| Alw21I | GWGCWC | 2 cut(s) | 570, 783 |
| Alw26I | GTCTC | 2 cut(s) | 213, 801 |
| AlwI | GGATC | 3 cut(s) | 821, 1118, 1159 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 53, 1072 |
| Aor13HI | TCCGGA | 1 cut(s) | 391 |
| ApeKI | GCWGC | 4 cut(s) | 10, 47, 300, 1066 |
| ApoI | RAATTY | 1 cut(s) | 76 |
| AspS9I | GGNCC | 5 cut(s) | 101, 773, 872, 1085, 1115 |
| AsuC2I | CCSGG | 2 cut(s) | 926, 1113 |
| AsuHPI | GGTGA | 4 cut(s) | 153, 242, 337, 1003 |
| AvaII | GGWCC | 5 cut(s) | 101, 773, 872, 1085, 1115 |
| BaeGI | GKGCMC | 1 cut(s) | 1079 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 527, 560 |
| BanI | GGYRCC | 1 cut(s) | 660 |
| BbrPI | CACGTG | 1 cut(s) | 1046 |
| BbsI | GAAGAC | 2 cut(s) | 1042, 1100 |
| Bbv12I | GWGCWC | 2 cut(s) | 570, 783 |
| BbvI | GCAGC | 4 cut(s) | 22, 59, 312, 1078 |
| BccI | CCATC | 2 cut(s) | 685, 1151 |
| BciT130I | CCWGG | 2 cut(s) | 939, 1083 |
| BciVI | GTATCC | 1 cut(s) | 399 |
| BcnI | CCSGG | 2 cut(s) | 926, 1113 |
| BcoDI | GTCTC | 2 cut(s) | 213, 801 |
| BfaI | CTAG | 1 cut(s) | 255 |
| BfuAI | ACCTGC | 1 cut(s) | 767 |
| BfuI | GTATCC | 1 cut(s) | 399 |
| BisI | GCNGC | 4 cut(s) | 11, 48, 301, 1067 |
| BlsI | GCNGC | 4 cut(s) | 12, 49, 302, 1068 |
| Bme1390I | CCNGG | 4 cut(s) | 926, 939, 1083, 1113 |
| Bme18I | GGWCC | 5 cut(s) | 101, 773, 872, 1085, 1115 |
| BmgT120I | GGNCC | 5 cut(s) | 101, 773, 872, 1085, 1115 |
| BmiI | GGNNCC | 3 cut(s) | 102, 662, 1116 |
| BmrFI | CCNGG | 4 cut(s) | 926, 939, 1083, 1113 |
| BmsI | GCATC | 1 cut(s) | 1170 |
| BpiI | GAAGAC | 2 cut(s) | 1042, 1100 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 232, 264 |
| BpuMI | CCSGG | 2 cut(s) | 926, 1113 |
| BsaAI | YACGTR | 1 cut(s) | 1046 |
| BsaJI | CCNNGG | 1 cut(s) | 1127 |
| BsaWI | WCCGGW | 1 cut(s) | 391 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 259, 881, 1148 |
| Bse1I | ACTGG | 1 cut(s) | 1014 |
| BseAI | TCCGGA | 1 cut(s) | 391 |
| BseBI | CCWGG | 2 cut(s) | 939, 1083 |
| BseDI | CCNNGG | 1 cut(s) | 1127 |
| BseGI | GGATG | 4 cut(s) | 523, 670, 783, 1162 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 259, 881, 1148 |
| BseMII | CTCAG | 3 cut(s) | 116, 230, 280 |
| BseNI | ACTGG | 1 cut(s) | 1014 |
| BseSI | GKGCMC | 1 cut(s) | 1079 |
| BseXI | GCAGC | 4 cut(s) | 22, 59, 312, 1078 |
| BshNI | GGYRCC | 1 cut(s) | 660 |
| BsiHKAI | GWGCWC | 2 cut(s) | 570, 783 |
| BsiSI | CCGG | 4 cut(s) | 392, 686, 925, 1112 |
| BslFI | GGGAC | 2 cut(s) | 862, 1128 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 259, 881, 1148 |
| BsmAI | GTCTC | 2 cut(s) | 213, 801 |
| BsmFI | GGGAC | 2 cut(s) | 862, 1128 |
| Bsp1286I | GDGCHC | 3 cut(s) | 570, 783, 1079 |
| Bsp13I | TCCGGA | 1 cut(s) | 391 |
| Bsp143I | GATC | 4 cut(s) | 463, 826, 1123, 1151 |
| BspCNI | CTCAG | 3 cut(s) | 117, 231, 279 |
| BspEI | TCCGGA | 1 cut(s) | 391 |
| BspLI | GGNNCC | 3 cut(s) | 102, 662, 1116 |
| BspMI | ACCTGC | 1 cut(s) | 767 |
| BspPI | GGATC | 3 cut(s) | 821, 1118, 1159 |
| BspT107I | GGYRCC | 1 cut(s) | 660 |
| BsrI | ACTGG | 1 cut(s) | 1014 |
| BssECI | CCNNGG | 1 cut(s) | 1127 |
| BssMI | GATC | 4 cut(s) | 463, 826, 1123, 1151 |
| BssT1I | CCWWGG | 1 cut(s) | 1127 |
| Bst2UI | CCWGG | 2 cut(s) | 939, 1083 |
| Bst4CI | ACNGT | 5 cut(s) | 55, 338, 587, 853, 1074 |
| Bst6I | CTCTTC | 1 cut(s) | 804 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 70 |
| BstBAI | YACGTR | 1 cut(s) | 1046 |
| BstDEI | CTNAG | 3 cut(s) | 125, 239, 266 |
| BstF5I | GGATG | 4 cut(s) | 523, 670, 783, 1162 |
| BstKTI | GATC | 4 cut(s) | 466, 829, 1126, 1154 |
| BstMAI | GTCTC | 2 cut(s) | 213, 801 |
| BstMBI | GATC | 4 cut(s) | 463, 826, 1123, 1151 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 70 |
| BstNI | CCWGG | 2 cut(s) | 939, 1083 |
| BstNSI | RCATGY | 1 cut(s) | 819 |
| BstSCI | CCNGG | 4 cut(s) | 924, 937, 1081, 1111 |
| BstSLI | GKGCMC | 1 cut(s) | 1079 |
| BstV1I | GCAGC | 4 cut(s) | 22, 59, 312, 1078 |
| BstV2I | GAAGAC | 2 cut(s) | 1042, 1100 |
| BstX2I | RGATCY | 1 cut(s) | 826 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 554 |
| BstYI | RGATCY | 1 cut(s) | 826 |
| BsuI | GTATCC | 1 cut(s) | 399 |
| BtsCI | GGATG | 4 cut(s) | 523, 670, 783, 1162 |
| BtsIMutI | CAGTG | 2 cut(s) | 45, 1021 |
| BveI | ACCTGC | 1 cut(s) | 767 |
| CaiI | CAGNNNCTG | 2 cut(s) | 53, 1072 |
| Cfr13I | GGNCC | 5 cut(s) | 101, 773, 872, 1085, 1115 |
| Csp6I | GTAC | 1 cut(s) | 544 |
| CviAII | CATG | 3 cut(s) | 85, 750, 816 |
| CviJI | RGCY | 7 cut(s) | 124, 152, 258, 303, 399, 1008, 1132 |
| CviKI_1 | RGCY | 7 cut(s) | 124, 152, 258, 303, 399, 1008, 1132 |
| CviQI | GTAC | 1 cut(s) | 544 |
| DdeI | CTNAG | 3 cut(s) | 125, 239, 266 |
| DpnI | GATC | 4 cut(s) | 465, 828, 1125, 1153 |
| DpnII | GATC | 4 cut(s) | 463, 826, 1123, 1151 |
| DraI | TTTAAA | 1 cut(s) | 294 |
| Eam1104I | CTCTTC | 1 cut(s) | 804 |
| EarI | CTCTTC | 1 cut(s) | 804 |
| Eco130I | CCWWGG | 1 cut(s) | 1127 |
| Eco32I | GATATC | 1 cut(s) | 109 |
| Eco47I | GGWCC | 5 cut(s) | 101, 773, 872, 1085, 1115 |
| Eco57I | CTGAAG | 4 cut(s) | 21, 174, 385, 1087 |
| Eco72I | CACGTG | 1 cut(s) | 1046 |
| EcoO109I | RGGNCCY | 3 cut(s) | 101, 773, 1115 |
| EcoRII | CCWGG | 2 cut(s) | 937, 1081 |
| EcoRV | GATATC | 1 cut(s) | 109 |
| EcoT14I | CCWWGG | 1 cut(s) | 1127 |
| ErhI | CCWWGG | 1 cut(s) | 1127 |
| FaeI | CATG | 3 cut(s) | 88, 753, 819 |
| FaqI | GGGAC | 2 cut(s) | 862, 1128 |
| FatI | CATG | 3 cut(s) | 84, 749, 815 |
| FauNDI | CATATG | 1 cut(s) | 196 |
| Fnu4HI | GCNGC | 4 cut(s) | 11, 48, 301, 1067 |
| FokI | GGATG | 4 cut(s) | 530, 657, 770, 1169 |
| Fsp4HI | GCNGC | 4 cut(s) | 11, 48, 301, 1067 |
| FspBI | CTAG | 1 cut(s) | 255 |
| GluI | GCNGC | 4 cut(s) | 11, 48, 301, 1067 |
| HapII | CCGG | 4 cut(s) | 392, 686, 925, 1112 |
| Hin1II | CATG | 3 cut(s) | 88, 753, 819 |
| HindIII | AAGCTT | 1 cut(s) | 397 |
| HinfI | GANTC | 5 cut(s) | 367, 521, 636, 942, 980 |
| HpaII | CCGG | 4 cut(s) | 392, 686, 925, 1112 |
| HphI | GGTGA | 4 cut(s) | 153, 242, 337, 1003 |
| Hpy166II | GTNNAC | 2 cut(s) | 161, 892 |
| Hpy188I | TCNGA | 7 cut(s) | 269, 404, 631, 715, 826, 1151, 1156 |
| Hpy188III | TCNNGA | 6 cut(s) | 104, 238, 392, 467, 856, 946 |
| Hpy8I | GTNNAC | 2 cut(s) | 161, 892 |
| HpyCH4III | ACNGT | 5 cut(s) | 55, 338, 587, 853, 1074 |
| HpyCH4IV | ACGT | 1 cut(s) | 1045 |
| HpyCH4V | TGCA | 7 cut(s) | 10, 283, 579, 762, 914, 1066, 1139 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 70 |
| HpyF3I | CTNAG | 3 cut(s) | 125, 239, 266 |
| HpySE526I | ACGT | 1 cut(s) | 1045 |
| Hsp92II | CATG | 3 cut(s) | 88, 753, 819 |
| Kpn2I | TCCGGA | 1 cut(s) | 391 |
| Kzo9I | GATC | 4 cut(s) | 463, 826, 1123, 1151 |
| Lsp1109I | GCAGC | 4 cut(s) | 22, 59, 312, 1078 |
| LweI | GCATC | 1 cut(s) | 1170 |
| MaeI | CTAG | 1 cut(s) | 255 |
| MaeII | ACGT | 1 cut(s) | 1045 |
| MaeIII | GTNAC | 2 cut(s) | 439, 703 |
| MalI | GATC | 4 cut(s) | 465, 828, 1125, 1153 |
| MboI | GATC | 4 cut(s) | 463, 826, 1123, 1151 |
| MboII | GAAGA | 5 cut(s) | 362, 470, 791, 1042, 1100 |
| MfeI | CAATTG | 1 cut(s) | 879 |
| MflI | RGATCY | 1 cut(s) | 826 |
| MhlI | GDGCHC | 3 cut(s) | 570, 783, 1079 |
| MmeI | TCCRAC | 2 cut(s) | 664, 850 |
| MroI | TCCGGA | 1 cut(s) | 391 |
| MseI | TTAA | 2 cut(s) | 293, 411 |
| MspI | CCGG | 4 cut(s) | 392, 686, 925, 1112 |
| MspR9I | CCNGG | 4 cut(s) | 926, 939, 1083, 1113 |
| MunI | CAATTG | 1 cut(s) | 879 |
| MvaI | CCWGG | 2 cut(s) | 939, 1083 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 70 |
| NciI | CCSGG | 2 cut(s) | 926, 1113 |
| NdeI | CATATG | 1 cut(s) | 196 |
| NdeII | GATC | 4 cut(s) | 463, 826, 1123, 1151 |
| NlaIII | CATG | 3 cut(s) | 88, 753, 819 |
| NlaIV | GGNNCC | 3 cut(s) | 102, 662, 1116 |
| NmeAIII | GCCGAG | 1 cut(s) | 113 |
| NspI | RCATGY | 1 cut(s) | 819 |
| PfeI | GAWTC | 5 cut(s) | 367, 521, 636, 942, 980 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 881 |
| PfoI | TCCNGGA | 2 cut(s) | 1081, 1111 |
| PkrI | GCNGC | 4 cut(s) | 12, 49, 302, 1068 |
| PmaCI | CACGTG | 1 cut(s) | 1046 |
| PmlI | CACGTG | 1 cut(s) | 1046 |
| Ppu21I | YACGTR | 1 cut(s) | 1046 |
| PpuMI | RGGWCCY | 3 cut(s) | 101, 773, 1115 |
| Psp5II | RGGWCCY | 3 cut(s) | 101, 773, 1115 |
| Psp6I | CCWGG | 2 cut(s) | 937, 1081 |
| PspCI | CACGTG | 1 cut(s) | 1046 |
| PspGI | CCWGG | 2 cut(s) | 937, 1081 |
| PspN4I | GGNNCC | 3 cut(s) | 102, 662, 1116 |
| PspPI | GGNCC | 5 cut(s) | 101, 773, 872, 1085, 1115 |
| PspPPI | RGGWCCY | 3 cut(s) | 101, 773, 1115 |
| PstNI | CAGNNNCTG | 2 cut(s) | 53, 1072 |
| PsuI | RGATCY | 1 cut(s) | 826 |
| RsaI | GTAC | 1 cut(s) | 545 |
| RsaNI | GTAC | 1 cut(s) | 544 |
| SaqAI | TTAA | 2 cut(s) | 293, 411 |
| SatI | GCNGC | 4 cut(s) | 11, 48, 301, 1067 |
| Sau3AI | GATC | 4 cut(s) | 463, 826, 1123, 1151 |
| Sau96I | GGNCC | 5 cut(s) | 101, 773, 872, 1085, 1115 |
| ScrFI | CCNGG | 4 cut(s) | 926, 939, 1083, 1113 |
| SduI | GDGCHC | 3 cut(s) | 570, 783, 1079 |
| SfaNI | GCATC | 1 cut(s) | 1170 |
| SinI | GGWCC | 5 cut(s) | 101, 773, 872, 1085, 1115 |
| SspMI | CTAG | 1 cut(s) | 255 |
| StyD4I | CCNGG | 4 cut(s) | 924, 937, 1081, 1111 |
| StyI | CCWWGG | 1 cut(s) | 1127 |
| TaaI | ACNGT | 5 cut(s) | 55, 338, 587, 853, 1074 |
| TaiI | ACGT | 1 cut(s) | 1048 |
| TaqI | TCGA | 1 cut(s) | 535 |
| TfiI | GAWTC | 5 cut(s) | 367, 521, 636, 942, 980 |
| Tru1I | TTAA | 2 cut(s) | 293, 411 |
| Tru9I | TTAA | 2 cut(s) | 293, 411 |
| TscAI | CASTG | 2 cut(s) | 45, 1021 |
| TseI | GCWGC | 4 cut(s) | 10, 47, 300, 1066 |
| TspGWI | ACGGA | 1 cut(s) | 156 |
| TspRI | CASTG | 2 cut(s) | 45, 1021 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 881 |
| VpaK11BI | GGWCC | 5 cut(s) | 101, 773, 872, 1085, 1115 |
| XapI | RAATTY | 1 cut(s) | 76 |
| XceI | RCATGY | 1 cut(s) | 819 |
| XspI | CTAG | 1 cut(s) | 255 |