Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LOB | PF03195 | 10 - 107 | 6.1e-36 | Lateral organ boundaries (LOB) domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 202 |
| AccB1I | GGYRCC | 2 cut(s) | 14, 418 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 289 |
| AccI | GTMKAC | 2 cut(s) | 174, 246 |
| AciI | CCGC | 3 cut(s) | 296, 881, 884 |
| AclWI | GGATC | 1 cut(s) | 882 |
| AcuI | CTGAAG | 1 cut(s) | 901 |
| AfaI | GTAC | 3 cut(s) | 281, 338, 463 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 248, 289 |
| AflII | CTTAAG | 1 cut(s) | 8 |
| AgsI | TTSAA | 8 cut(s) | 119, 157, 311, 695, 731, 746, 828, 898 |
| AjnI | CCWGG | 1 cut(s) | 24 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 210, 242 |
| AluBI | AGCT | 7 cut(s) | 83, 133, 307, 328, 725, 760, 948 |
| AluI | AGCT | 7 cut(s) | 83, 133, 307, 328, 725, 760, 948 |
| Alw21I | GWGCWC | 1 cut(s) | 65 |
| Alw26I | GTCTC | 5 cut(s) | 188, 188, 225, 680, 712 |
| Alw44I | GTGCAC | 1 cut(s) | 61 |
| AlwI | GGATC | 1 cut(s) | 882 |
| AoxI | GGCC | 2 cut(s) | 27, 627 |
| ApaI | GGGCCC | 1 cut(s) | 631 |
| ApaLI | GTGCAC | 1 cut(s) | 61 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 741 |
| AspS9I | GGNCC | 2 cut(s) | 627, 628 |
| AsuC2I | CCSGG | 1 cut(s) | 610 |
| AsuHPI | GGTGA | 1 cut(s) | 274 |
| BaeGI | GKGCMC | 3 cut(s) | 65, 77, 631 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 643, 676 |
| BanI | GGYRCC | 2 cut(s) | 14, 418 |
| BanII | GRGCYC | 1 cut(s) | 631 |
| Bbv12I | GWGCWC | 1 cut(s) | 65 |
| BccI | CCATC | 3 cut(s) | 215, 449, 865 |
| BceAI | ACGGC | 1 cut(s) | 265 |
| BciT130I | CCWGG | 1 cut(s) | 26 |
| BcnI | CCSGG | 1 cut(s) | 610 |
| BcoDI | GTCTC | 5 cut(s) | 188, 188, 225, 680, 712 |
| BfaI | CTAG | 2 cut(s) | 722, 949 |
| BfmI | CTRYAG | 1 cut(s) | 906 |
| BfrI | CTTAAG | 1 cut(s) | 8 |
| BmcAI | AGTACT | 1 cut(s) | 463 |
| Bme1390I | CCNGG | 2 cut(s) | 26, 610 |
| BmgT120I | GGNCC | 2 cut(s) | 627, 628 |
| BmiI | GGNNCC | 3 cut(s) | 16, 420, 629 |
| BmrFI | CCNGG | 2 cut(s) | 26, 610 |
| BmrI | ACTGGG | 1 cut(s) | 694 |
| BmsI | GCATC | 1 cut(s) | 553 |
| BmuI | ACTGGG | 1 cut(s) | 694 |
| BoxI | GACNNNNGTC | 1 cut(s) | 180 |
| BpuEI | CTTGAG | 1 cut(s) | 170 |
| BpuMI | CCSGG | 1 cut(s) | 610 |
| Bsa29I | ATCGAT | 1 cut(s) | 869 |
| BsaI | GGTCTC | 1 cut(s) | 188 |
| BsaJI | CCNNGG | 2 cut(s) | 594, 609 |
| BsaWI | WCCGGW | 1 cut(s) | 241 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 575, 605 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 248, 289 |
| Bse1I | ACTGG | 1 cut(s) | 700 |
| BseBI | CCWGG | 1 cut(s) | 26 |
| BseCI | ATCGAT | 1 cut(s) | 869 |
| BseDI | CCNNGG | 2 cut(s) | 594, 609 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 248, 289 |
| BseNI | ACTGG | 1 cut(s) | 700 |
| BseSI | GKGCMC | 3 cut(s) | 65, 77, 631 |
| BsgI | GTGCAG | 1 cut(s) | 746 |
| BshFI | GGCC | 2 cut(s) | 29, 629 |
| BshNI | GGYRCC | 2 cut(s) | 14, 418 |
| BshVI | ATCGAT | 1 cut(s) | 869 |
| BsiHKAI | GWGCWC | 1 cut(s) | 65 |
| BsiSI | CCGG | 2 cut(s) | 242, 609 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 248, 289 |
| BsmAI | GTCTC | 5 cut(s) | 188, 188, 225, 680, 712 |
| BsnI | GGCC | 2 cut(s) | 29, 629 |
| Bso31I | GGTCTC | 1 cut(s) | 188 |
| Bsp120I | GGGCCC | 1 cut(s) | 627 |
| Bsp1286I | GDGCHC | 3 cut(s) | 65, 77, 631 |
| Bsp1407I | TGTACA | 1 cut(s) | 336 |
| Bsp143I | GATC | 2 cut(s) | 264, 874 |
| BspACI | CCGC | 3 cut(s) | 296, 881, 884 |
| BspANI | GGCC | 2 cut(s) | 29, 629 |
| BspDI | ATCGAT | 1 cut(s) | 869 |
| BspLI | GGNNCC | 3 cut(s) | 16, 420, 629 |
| BspMAI | CTGCAG | 1 cut(s) | 910 |
| BspPI | GGATC | 1 cut(s) | 882 |
| BspT107I | GGYRCC | 2 cut(s) | 14, 418 |
| BspTI | CTTAAG | 1 cut(s) | 8 |
| BspTNI | GGTCTC | 1 cut(s) | 188 |
| BsrGI | TGTACA | 1 cut(s) | 336 |
| BsrI | ACTGG | 1 cut(s) | 700 |
| BssECI | CCNNGG | 2 cut(s) | 594, 609 |
| BssMI | GATC | 2 cut(s) | 264, 874 |
| BssT1I | CCWWGG | 1 cut(s) | 594 |
| Bst2UI | CCWGG | 1 cut(s) | 26 |
| Bst4CI | ACNGT | 3 cut(s) | 279, 691, 795 |
| Bst6I | CTCTTC | 1 cut(s) | 893 |
| BstAFI | CTTAAG | 1 cut(s) | 8 |
| BstAUI | TGTACA | 1 cut(s) | 336 |
| BstC8I | GCNNGC | 4 cut(s) | 40, 65, 330, 913 |
| BstKTI | GATC | 2 cut(s) | 267, 877 |
| BstMAI | GTCTC | 5 cut(s) | 188, 188, 225, 680, 712 |
| BstMBI | GATC | 2 cut(s) | 264, 874 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 35, 364, 532, 535, 538 |
| BstNI | CCWGG | 1 cut(s) | 26 |
| BstNSI | RCATGY | 2 cut(s) | 42, 915 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 180 |
| BstSCI | CCNGG | 2 cut(s) | 24, 608 |
| BstSFI | CTRYAG | 1 cut(s) | 906 |
| BstSLI | GKGCMC | 3 cut(s) | 65, 77, 631 |
| Bsu15I | ATCGAT | 1 cut(s) | 869 |
| BsuRI | GGCC | 2 cut(s) | 29, 629 |
| BsuTUI | ATCGAT | 1 cut(s) | 869 |
| Cac8I | GCNNGC | 4 cut(s) | 40, 65, 330, 913 |
| Cfr13I | GGNCC | 2 cut(s) | 627, 628 |
| ClaI | ATCGAT | 1 cut(s) | 869 |
| CseI | GACGC | 1 cut(s) | 919 |
| Csp6I | GTAC | 3 cut(s) | 280, 337, 462 |
| CviAII | CATG | 6 cut(s) | 39, 199, 415, 503, 878, 912 |
| CviQI | GTAC | 3 cut(s) | 280, 337, 462 |
| DpnI | GATC | 2 cut(s) | 266, 876 |
| DpnII | GATC | 2 cut(s) | 264, 874 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 202 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 202 |
| Eam1104I | CTCTTC | 1 cut(s) | 893 |
| EarI | CTCTTC | 1 cut(s) | 893 |
| EciI | GGCGGA | 1 cut(s) | 899 |
| Eco130I | CCWWGG | 1 cut(s) | 594 |
| Eco147I | AGGCCT | 1 cut(s) | 29 |
| Eco24I | GRGCYC | 1 cut(s) | 631 |
| Eco31I | GGTCTC | 1 cut(s) | 188 |
| Eco57I | CTGAAG | 1 cut(s) | 901 |
| EcoRII | CCWGG | 1 cut(s) | 24 |
| EcoT14I | CCWWGG | 1 cut(s) | 594 |
| EcoT38I | GRGCYC | 1 cut(s) | 631 |
| ErhI | CCWWGG | 1 cut(s) | 594 |
| FaeI | CATG | 6 cut(s) | 42, 202, 418, 506, 881, 915 |
| FatI | CATG | 6 cut(s) | 38, 198, 414, 502, 877, 911 |
| FblI | GTMKAC | 2 cut(s) | 174, 246 |
| FriOI | GRGCYC | 1 cut(s) | 631 |
| FspBI | CTAG | 2 cut(s) | 722, 949 |
| HaeIII | GGCC | 2 cut(s) | 29, 629 |
| HapII | CCGG | 2 cut(s) | 242, 609 |
| HgaI | GACGC | 1 cut(s) | 919 |
| Hin1II | CATG | 6 cut(s) | 42, 202, 418, 506, 881, 915 |
| HincII | GTYRAC | 1 cut(s) | 175 |
| HindII | GTYRAC | 1 cut(s) | 175 |
| HindIII | AAGCTT | 1 cut(s) | 131 |
| HinfI | GANTC | 5 cut(s) | 590, 731, 806, 824, 842 |
| HpaII | CCGG | 2 cut(s) | 242, 609 |
| HphI | GGTGA | 1 cut(s) | 274 |
| Hpy166II | GTNNAC | 3 cut(s) | 63, 175, 247 |
| Hpy188I | TCNGA | 3 cut(s) | 707, 736, 838 |
| Hpy188III | TCNNGA | 3 cut(s) | 154, 230, 746 |
| Hpy8I | GTNNAC | 3 cut(s) | 63, 175, 247 |
| Hpy99I | CGWCG | 1 cut(s) | 563 |
| HpyCH4III | ACNGT | 3 cut(s) | 279, 691, 795 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 35, 364, 532, 535, 538 |
| Hsp92II | CATG | 6 cut(s) | 42, 202, 418, 506, 881, 915 |
| Kzo9I | GATC | 2 cut(s) | 264, 874 |
| LmnI | GCTCC | 3 cut(s) | 88, 298, 304 |
| LweI | GCATC | 1 cut(s) | 553 |
| MaeI | CTAG | 2 cut(s) | 722, 949 |
| MaeIII | GTNAC | 2 cut(s) | 391, 514 |
| MalI | GATC | 2 cut(s) | 266, 876 |
| MboI | GATC | 2 cut(s) | 264, 874 |
| MboII | GAAGA | 5 cut(s) | 66, 169, 749, 851, 910 |
| MhlI | GDGCHC | 3 cut(s) | 65, 77, 631 |
| MluCI | AATT | 4 cut(s) | 272, 401, 407, 863 |
| MlyI | GAGTC | 1 cut(s) | 584 |
| MnlI | CCTC | 4 cut(s) | 253, 406, 510, 808 |
| MroXI | GAANNNNTTC | 1 cut(s) | 741 |
| MseI | TTAA | 3 cut(s) | 9, 165, 849 |
| MspCI | CTTAAG | 1 cut(s) | 8 |
| MspI | CCGG | 2 cut(s) | 242, 609 |
| MspR9I | CCNGG | 2 cut(s) | 26, 610 |
| MvaI | CCWGG | 1 cut(s) | 26 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 35, 364, 532, 535, 538 |
| NciI | CCSGG | 1 cut(s) | 610 |
| NdeII | GATC | 2 cut(s) | 264, 874 |
| NlaIII | CATG | 6 cut(s) | 42, 202, 418, 506, 881, 915 |
| NlaIV | GGNNCC | 3 cut(s) | 16, 420, 629 |
| NmuCI | GTSAC | 1 cut(s) | 391 |
| NspI | RCATGY | 2 cut(s) | 42, 915 |
| PaeI | GCATGC | 2 cut(s) | 42, 915 |
| PceI | AGGCCT | 1 cut(s) | 29 |
| PdmI | GAANNNNTTC | 1 cut(s) | 741 |
| PfeI | GAWTC | 4 cut(s) | 731, 806, 824, 842 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 289 |
| PleI | GAGTC | 1 cut(s) | 584 |
| PpsI | GAGTC | 1 cut(s) | 584 |
| PshAI | GACNNNNGTC | 1 cut(s) | 180 |
| Psp6I | CCWGG | 1 cut(s) | 24 |
| PspGI | CCWGG | 1 cut(s) | 24 |
| PspN4I | GGNNCC | 3 cut(s) | 16, 420, 629 |
| PspOMI | GGGCCC | 1 cut(s) | 627 |
| PspPI | GGNCC | 2 cut(s) | 627, 628 |
| PstI | CTGCAG | 1 cut(s) | 910 |
| RsaI | GTAC | 3 cut(s) | 281, 338, 463 |
| RsaNI | GTAC | 3 cut(s) | 280, 337, 462 |
| SalI | GTCGAC | 1 cut(s) | 173 |
| SaqAI | TTAA | 3 cut(s) | 9, 165, 849 |
| Sau3AI | GATC | 2 cut(s) | 264, 874 |
| Sau96I | GGNCC | 2 cut(s) | 627, 628 |
| ScaI | AGTACT | 1 cut(s) | 463 |
| SchI | GAGTC | 1 cut(s) | 584 |
| ScrFI | CCNGG | 2 cut(s) | 26, 610 |
| SduI | GDGCHC | 3 cut(s) | 65, 77, 631 |
| SfaNI | GCATC | 1 cut(s) | 553 |
| SfcI | CTRYAG | 1 cut(s) | 906 |
| SmlI | CTYRAG | 2 cut(s) | 8, 185 |
| SmoI | CTYRAG | 2 cut(s) | 8, 185 |
| SphI | GCATGC | 2 cut(s) | 42, 915 |
| Sse9I | AATT | 4 cut(s) | 272, 401, 407, 863 |
| SseBI | AGGCCT | 1 cut(s) | 29 |
| SsiI | CCGC | 3 cut(s) | 296, 881, 884 |
| SspI | AATATT | 1 cut(s) | 604 |
| SspMI | CTAG | 2 cut(s) | 722, 949 |
| StuI | AGGCCT | 1 cut(s) | 29 |
| StyD4I | CCNGG | 2 cut(s) | 24, 608 |
| StyI | CCWWGG | 1 cut(s) | 594 |
| TaaI | ACNGT | 3 cut(s) | 279, 691, 795 |
| TaqI | TCGA | 5 cut(s) | 174, 229, 553, 774, 869 |
| TasI | AATT | 4 cut(s) | 272, 401, 407, 863 |
| TatI | WGTACW | 2 cut(s) | 336, 461 |
| TauI | GCSGC | 1 cut(s) | 884 |
| TfiI | GAWTC | 4 cut(s) | 731, 806, 824, 842 |
| Tru1I | TTAA | 3 cut(s) | 9, 165, 849 |
| Tru9I | TTAA | 3 cut(s) | 9, 165, 849 |
| TseFI | GTSAC | 1 cut(s) | 391 |
| Tsp45I | GTSAC | 1 cut(s) | 391 |
| TspDTI | ATGAA | 3 cut(s) | 215, 308, 363 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 289 |
| Vha464I | CTTAAG | 1 cut(s) | 8 |
| VneI | GTGCAC | 1 cut(s) | 61 |
| XceI | RCATGY | 2 cut(s) | 42, 915 |
| XmiI | GTMKAC | 2 cut(s) | 174, 246 |
| XmnI | GAANNNNTTC | 1 cut(s) | 741 |
| XspI | CTAG | 2 cut(s) | 722, 949 |
| ZrmI | AGTACT | 1 cut(s) | 463 |