Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 539 |
| AccB1I | GGYRCC | 1 cut(s) | 653 |
| AccIII | TCCGGA | 1 cut(s) | 343 |
| AcsI | RAATTY | 3 cut(s) | 177, 357, 434 |
| AcuI | CTGAAG | 1 cut(s) | 656 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 626 |
| AgsI | TTSAA | 8 cut(s) | 334, 508, 559, 717, 839, 853, 863, 914 |
| AjnI | CCWGG | 5 cut(s) | 100, 163, 185, 233, 531 |
| AluBI | AGCT | 2 cut(s) | 74, 997 |
| AluI | AGCT | 2 cut(s) | 74, 997 |
| Aor13HI | TCCGGA | 1 cut(s) | 343 |
| AoxI | GGCC | 1 cut(s) | 639 |
| ApeKI | GCWGC | 2 cut(s) | 806, 986 |
| ApoI | RAATTY | 3 cut(s) | 177, 357, 434 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 46 |
| AspLEI | GCGC | 1 cut(s) | 540 |
| AspS9I | GGNCC | 1 cut(s) | 462 |
| AsuNHI | GCTAGC | 1 cut(s) | 70 |
| AvaII | GGWCC | 1 cut(s) | 462 |
| BanI | GGYRCC | 1 cut(s) | 653 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 34, 66 |
| BbsI | GAAGAC | 1 cut(s) | 927 |
| BbvI | GCAGC | 2 cut(s) | 793, 998 |
| BccI | CCATC | 3 cut(s) | 224, 644, 881 |
| BciT130I | CCWGG | 5 cut(s) | 102, 165, 187, 235, 533 |
| BfaI | CTAG | 4 cut(s) | 71, 117, 498, 624 |
| BfmI | CTRYAG | 3 cut(s) | 93, 227, 807 |
| BisI | GCNGC | 2 cut(s) | 807, 987 |
| BlsI | GCNGC | 2 cut(s) | 808, 988 |
| Bme1390I | CCNGG | 5 cut(s) | 102, 165, 187, 235, 533 |
| Bme18I | GGWCC | 1 cut(s) | 462 |
| BmgT120I | GGNCC | 1 cut(s) | 462 |
| BmiI | GGNNCC | 4 cut(s) | 401, 655, 825, 926 |
| BmrFI | CCNGG | 5 cut(s) | 102, 165, 187, 235, 533 |
| BmsI | GCATC | 2 cut(s) | 526, 875 |
| BmtI | GCTAGC | 1 cut(s) | 74 |
| BoxI | GACNNNNGTC | 1 cut(s) | 493 |
| BpiI | GAAGAC | 1 cut(s) | 927 |
| BsaJI | CCNNGG | 1 cut(s) | 599 |
| BsaWI | WCCGGW | 1 cut(s) | 343 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 875, 905 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 626 |
| Bse118I | RCCGGY | 1 cut(s) | 66 |
| BseAI | TCCGGA | 1 cut(s) | 343 |
| BseBI | CCWGG | 5 cut(s) | 102, 165, 187, 235, 533 |
| BseDI | CCNNGG | 1 cut(s) | 599 |
| BseGI | GGATG | 1 cut(s) | 892 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 626 |
| BseMII | CTCAG | 1 cut(s) | 440 |
| BseRI | GAGGAG | 2 cut(s) | 609, 896 |
| BseXI | GCAGC | 2 cut(s) | 793, 998 |
| BshFI | GGCC | 1 cut(s) | 641 |
| BshNI | GGYRCC | 1 cut(s) | 653 |
| BsiSI | CCGG | 2 cut(s) | 67, 344 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 626 |
| BsnI | GGCC | 1 cut(s) | 641 |
| Bsp13I | TCCGGA | 1 cut(s) | 343 |
| Bsp143I | GATC | 2 cut(s) | 18, 352 |
| BspANI | GGCC | 1 cut(s) | 641 |
| BspCNI | CTCAG | 1 cut(s) | 439 |
| BspEI | TCCGGA | 1 cut(s) | 343 |
| BspLI | GGNNCC | 4 cut(s) | 401, 655, 825, 926 |
| BspMAI | CTGCAG | 2 cut(s) | 231, 811 |
| BspOI | GCTAGC | 1 cut(s) | 74 |
| BspQI | GCTCTTC | 1 cut(s) | 447 |
| BspT107I | GGYRCC | 1 cut(s) | 653 |
| BsrFI | RCCGGY | 1 cut(s) | 66 |
| BssAI | RCCGGY | 1 cut(s) | 66 |
| BssECI | CCNNGG | 1 cut(s) | 599 |
| BssMI | GATC | 2 cut(s) | 18, 352 |
| BssT1I | CCWWGG | 1 cut(s) | 599 |
| Bst2UI | CCWGG | 5 cut(s) | 102, 165, 187, 235, 533 |
| Bst6I | CTCTTC | 1 cut(s) | 447 |
| BstC8I | GCNNGC | 1 cut(s) | 72 |
| BstDEI | CTNAG | 2 cut(s) | 426, 870 |
| BstF5I | GGATG | 1 cut(s) | 892 |
| BstHHI | GCGC | 1 cut(s) | 540 |
| BstKTI | GATC | 2 cut(s) | 21, 355 |
| BstMBI | GATC | 2 cut(s) | 18, 352 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 235, 267 |
| BstNI | CCWGG | 5 cut(s) | 102, 165, 187, 235, 533 |
| BstNSI | RCATGY | 1 cut(s) | 242 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 493 |
| BstSCI | CCNGG | 5 cut(s) | 100, 163, 185, 233, 531 |
| BstSFI | CTRYAG | 3 cut(s) | 93, 227, 807 |
| BstV1I | GCAGC | 2 cut(s) | 793, 998 |
| BstV2I | GAAGAC | 1 cut(s) | 927 |
| BsuRI | GGCC | 1 cut(s) | 641 |
| BtsCI | GGATG | 1 cut(s) | 892 |
| Cac8I | GCNNGC | 1 cut(s) | 72 |
| CfoI | GCGC | 1 cut(s) | 540 |
| Cfr10I | RCCGGY | 1 cut(s) | 66 |
| Cfr13I | GGNCC | 1 cut(s) | 462 |
| CsiI | ACCWGGT | 1 cut(s) | 100 |
| CviAII | CATG | 2 cut(s) | 239, 962 |
| DdeI | CTNAG | 2 cut(s) | 426, 870 |
| DpnI | GATC | 2 cut(s) | 20, 354 |
| DpnII | GATC | 2 cut(s) | 18, 352 |
| Eam1104I | CTCTTC | 1 cut(s) | 447 |
| EarI | CTCTTC | 1 cut(s) | 447 |
| Eco130I | CCWWGG | 1 cut(s) | 599 |
| Eco32I | GATATC | 1 cut(s) | 919 |
| Eco47I | GGWCC | 1 cut(s) | 462 |
| Eco57I | CTGAAG | 1 cut(s) | 656 |
| EcoRII | CCWGG | 5 cut(s) | 100, 163, 185, 233, 531 |
| EcoRV | GATATC | 1 cut(s) | 919 |
| EcoT14I | CCWWGG | 1 cut(s) | 599 |
| ErhI | CCWWGG | 1 cut(s) | 599 |
| FaeI | CATG | 2 cut(s) | 242, 965 |
| FatI | CATG | 2 cut(s) | 238, 961 |
| FauNDI | CATATG | 1 cut(s) | 467 |
| Fnu4HI | GCNGC | 2 cut(s) | 807, 987 |
| FokI | GGATG | 1 cut(s) | 899 |
| Fsp4HI | GCNGC | 2 cut(s) | 807, 987 |
| FspBI | CTAG | 4 cut(s) | 71, 117, 498, 624 |
| FspI | TGCGCA | 1 cut(s) | 539 |
| GlaI | GCGC | 1 cut(s) | 539 |
| GluI | GCNGC | 2 cut(s) | 807, 987 |
| HaeIII | GGCC | 1 cut(s) | 641 |
| HapII | CCGG | 2 cut(s) | 67, 344 |
| HhaI | GCGC | 1 cut(s) | 540 |
| Hin1II | CATG | 2 cut(s) | 242, 965 |
| Hin6I | GCGC | 1 cut(s) | 538 |
| HinP1I | GCGC | 1 cut(s) | 538 |
| HindIII | AAGCTT | 1 cut(s) | 995 |
| HinfI | GANTC | 7 cut(s) | 32, 418, 481, 668, 704, 839, 974 |
| HpaII | CCGG | 2 cut(s) | 67, 344 |
| Hpy166II | GTNNAC | 1 cut(s) | 526 |
| Hpy188I | TCNGA | 2 cut(s) | 701, 844 |
| Hpy188III | TCNNGA | 6 cut(s) | 8, 344, 365, 428, 573, 665 |
| Hpy8I | GTNNAC | 1 cut(s) | 526 |
| HpyAV | CCTTC | 3 cut(s) | 466, 631, 954 |
| HpyCH4IV | ACGT | 1 cut(s) | 577 |
| HpyCH4V | TGCA | 4 cut(s) | 229, 270, 517, 809 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 235, 267 |
| HpyF3I | CTNAG | 2 cut(s) | 426, 870 |
| HpySE526I | ACGT | 1 cut(s) | 577 |
| Hsp92II | CATG | 2 cut(s) | 242, 965 |
| HspAI | GCGC | 1 cut(s) | 538 |
| Kpn2I | TCCGGA | 1 cut(s) | 343 |
| Kzo9I | GATC | 2 cut(s) | 18, 352 |
| LguI | GCTCTTC | 1 cut(s) | 447 |
| LmnI | GCTCC | 2 cut(s) | 405, 829 |
| Lsp1109I | GCAGC | 2 cut(s) | 793, 998 |
| LweI | GCATC | 2 cut(s) | 526, 875 |
| MabI | ACCWGGT | 1 cut(s) | 100 |
| MaeI | CTAG | 4 cut(s) | 71, 117, 498, 624 |
| MaeII | ACGT | 1 cut(s) | 577 |
| MalI | GATC | 2 cut(s) | 20, 354 |
| MboI | GATC | 2 cut(s) | 18, 352 |
| MboII | GAAGA | 6 cut(s) | 54, 99, 192, 434, 926, 927 |
| MfeI | CAATTG | 1 cut(s) | 717 |
| MluCI | AATT | 8 cut(s) | 112, 177, 335, 357, 404, 434, 717, 854 |
| MlyI | GAGTC | 1 cut(s) | 983 |
| MmeI | TCCRAC | 1 cut(s) | 1002 |
| MroI | TCCGGA | 1 cut(s) | 343 |
| MroXI | GAANNNNTTC | 1 cut(s) | 46 |
| MseI | TTAA | 1 cut(s) | 660 |
| MslI | CAYNNNNRTG | 1 cut(s) | 871 |
| MspI | CCGG | 2 cut(s) | 67, 344 |
| MspR9I | CCNGG | 5 cut(s) | 102, 165, 187, 235, 533 |
| MunI | CAATTG | 1 cut(s) | 717 |
| MvaI | CCWGG | 5 cut(s) | 102, 165, 187, 235, 533 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 235, 267 |
| NdeI | CATATG | 1 cut(s) | 467 |
| NdeII | GATC | 2 cut(s) | 18, 352 |
| NheI | GCTAGC | 1 cut(s) | 70 |
| NlaIII | CATG | 2 cut(s) | 242, 965 |
| NlaIV | GGNNCC | 4 cut(s) | 401, 655, 825, 926 |
| NsbI | TGCGCA | 1 cut(s) | 539 |
| NspI | RCATGY | 1 cut(s) | 242 |
| PciSI | GCTCTTC | 1 cut(s) | 447 |
| PdmI | GAANNNNTTC | 1 cut(s) | 46 |
| PfeI | GAWTC | 6 cut(s) | 32, 418, 481, 668, 704, 839 |
| PkrI | GCNGC | 2 cut(s) | 808, 988 |
| PleI | GAGTC | 1 cut(s) | 982 |
| PpsI | GAGTC | 1 cut(s) | 982 |
| PshAI | GACNNNNGTC | 1 cut(s) | 493 |
| Psp6I | CCWGG | 5 cut(s) | 100, 163, 185, 233, 531 |
| PspGI | CCWGG | 5 cut(s) | 100, 163, 185, 233, 531 |
| PspN4I | GGNNCC | 4 cut(s) | 401, 655, 825, 926 |
| PspPI | GGNCC | 1 cut(s) | 462 |
| PstI | CTGCAG | 2 cut(s) | 231, 811 |
| RseI | CAYNNNNRTG | 1 cut(s) | 871 |
| SapI | GCTCTTC | 1 cut(s) | 447 |
| SaqAI | TTAA | 1 cut(s) | 660 |
| SatI | GCNGC | 2 cut(s) | 807, 987 |
| Sau3AI | GATC | 2 cut(s) | 18, 352 |
| Sau96I | GGNCC | 1 cut(s) | 462 |
| SchI | GAGTC | 1 cut(s) | 983 |
| ScrFI | CCNGG | 5 cut(s) | 102, 165, 187, 235, 533 |
| SexAI | ACCWGGT | 1 cut(s) | 100 |
| SfaNI | GCATC | 2 cut(s) | 526, 875 |
| SfcI | CTRYAG | 3 cut(s) | 93, 227, 807 |
| SinI | GGWCC | 1 cut(s) | 462 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 871 |
| Sse9I | AATT | 8 cut(s) | 112, 177, 335, 357, 404, 434, 717, 854 |
| SspMI | CTAG | 4 cut(s) | 71, 117, 498, 624 |
| StyD4I | CCNGG | 5 cut(s) | 100, 163, 185, 233, 531 |
| StyI | CCWWGG | 1 cut(s) | 599 |
| TaiI | ACGT | 1 cut(s) | 580 |
| TaqI | TCGA | 2 cut(s) | 355, 595 |
| TasI | AATT | 8 cut(s) | 112, 177, 335, 357, 404, 434, 717, 854 |
| TfiI | GAWTC | 6 cut(s) | 32, 418, 481, 668, 704, 839 |
| Tru1I | TTAA | 1 cut(s) | 660 |
| Tru9I | TTAA | 1 cut(s) | 660 |
| TseI | GCWGC | 2 cut(s) | 806, 986 |
| TspDTI | ATGAA | 2 cut(s) | 170, 235 |
| VpaK11BI | GGWCC | 1 cut(s) | 462 |
| XapI | RAATTY | 3 cut(s) | 177, 357, 434 |
| XceI | RCATGY | 1 cut(s) | 242 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 606 |
| XmnI | GAANNNNTTC | 1 cut(s) | 46 |
| XspI | CTAG | 4 cut(s) | 71, 117, 498, 624 |