zinc-binding in reverse transcriptase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 148 - 222 | 8.9e-11 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 78 |
| AccII | CGCG | 1 cut(s) | 165 |
| AciI | CCGC | 1 cut(s) | 165 |
| AcsI | RAATTY | 1 cut(s) | 95 |
| AcuI | CTGAAG | 1 cut(s) | 540 |
| AfaI | GTAC | 2 cut(s) | 32, 331 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 425 |
| AflIII | ACRYGT | 2 cut(s) | 33, 81 |
| AgsI | TTSAA | 3 cut(s) | 234, 240, 638 |
| AjnI | CCWGG | 2 cut(s) | 284, 292 |
| AleI | CACNNNNGTG | 1 cut(s) | 543 |
| AluBI | AGCT | 4 cut(s) | 230, 260, 433, 618 |
| AluI | AGCT | 4 cut(s) | 230, 260, 433, 618 |
| Alw26I | GTCTC | 1 cut(s) | 58 |
| AoxI | GGCC | 2 cut(s) | 282, 579 |
| ApeKI | GCWGC | 1 cut(s) | 524 |
| ApoI | RAATTY | 1 cut(s) | 95 |
| AspS9I | GGNCC | 2 cut(s) | 24, 282 |
| AvaII | GGWCC | 1 cut(s) | 24 |
| BbvI | GCAGC | 1 cut(s) | 511 |
| BccI | CCATC | 1 cut(s) | 443 |
| BciT130I | CCWGG | 2 cut(s) | 286, 294 |
| BcoDI | GTCTC | 1 cut(s) | 58 |
| BfaI | CTAG | 1 cut(s) | 515 |
| BfmI | CTRYAG | 1 cut(s) | 596 |
| BglII | AGATCT | 1 cut(s) | 203 |
| BisI | GCNGC | 1 cut(s) | 525 |
| BlsI | GCNGC | 1 cut(s) | 526 |
| Bme1390I | CCNGG | 2 cut(s) | 286, 294 |
| Bme18I | GGWCC | 1 cut(s) | 24 |
| BmgT120I | GGNCC | 2 cut(s) | 24, 282 |
| BmiI | GGNNCC | 2 cut(s) | 291, 605 |
| BmrFI | CCNGG | 2 cut(s) | 286, 294 |
| BmsI | GCATC | 1 cut(s) | 558 |
| Bpu10I | CCTNAGC | 1 cut(s) | 372 |
| BpuEI | CTTGAG | 1 cut(s) | 82 |
| BsaJI | CCNNGG | 1 cut(s) | 285 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 425 |
| Bse1I | ACTGG | 2 cut(s) | 247, 595 |
| BseBI | CCWGG | 2 cut(s) | 286, 294 |
| BseDI | CCNNGG | 1 cut(s) | 285 |
| BseGI | GGATG | 1 cut(s) | 454 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 425 |
| BseMII | CTCAG | 2 cut(s) | 130, 363 |
| BseNI | ACTGG | 2 cut(s) | 247, 595 |
| BseXI | GCAGC | 1 cut(s) | 511 |
| Bsh1236I | CGCG | 1 cut(s) | 165 |
| BshFI | GGCC | 2 cut(s) | 284, 581 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 425 |
| BsmAI | GTCTC | 1 cut(s) | 58 |
| BsmI | GAATGC | 1 cut(s) | 492 |
| BsnI | GGCC | 2 cut(s) | 284, 581 |
| Bsp1407I | TGTACA | 1 cut(s) | 30 |
| Bsp143I | GATC | 2 cut(s) | 203, 318 |
| BspACI | CCGC | 1 cut(s) | 165 |
| BspANI | GGCC | 2 cut(s) | 284, 581 |
| BspCNI | CTCAG | 2 cut(s) | 129, 364 |
| BspFNI | CGCG | 1 cut(s) | 165 |
| BspHI | TCATGA | 1 cut(s) | 346 |
| BspLI | GGNNCC | 2 cut(s) | 291, 605 |
| BspMAI | CTGCAG | 1 cut(s) | 600 |
| BsrGI | TGTACA | 1 cut(s) | 30 |
| BsrI | ACTGG | 2 cut(s) | 247, 595 |
| BssECI | CCNNGG | 1 cut(s) | 285 |
| BssMI | GATC | 2 cut(s) | 203, 318 |
| BssNAI | GTATAC | 1 cut(s) | 79 |
| Bst1107I | GTATAC | 1 cut(s) | 79 |
| Bst2UI | CCWGG | 2 cut(s) | 286, 294 |
| Bst4CI | ACNGT | 1 cut(s) | 647 |
| Bst6I | CTCTTC | 1 cut(s) | 559 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 524 |
| BstAUI | TGTACA | 1 cut(s) | 30 |
| BstDEI | CTNAG | 4 cut(s) | 116, 372, 497, 534 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 423 |
| BstF5I | GGATG | 1 cut(s) | 454 |
| BstFNI | CGCG | 1 cut(s) | 165 |
| BstKTI | GATC | 2 cut(s) | 206, 321 |
| BstMAI | GTCTC | 1 cut(s) | 58 |
| BstMBI | GATC | 2 cut(s) | 203, 318 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 257, 430, 524, 566 |
| BstNI | CCWGG | 2 cut(s) | 286, 294 |
| BstNSI | RCATGY | 2 cut(s) | 37, 85 |
| BstSCI | CCNGG | 2 cut(s) | 284, 292 |
| BstSFI | CTRYAG | 1 cut(s) | 596 |
| BstUI | CGCG | 1 cut(s) | 165 |
| BstV1I | GCAGC | 1 cut(s) | 511 |
| BstX2I | RGATCY | 1 cut(s) | 203 |
| BstYI | RGATCY | 1 cut(s) | 203 |
| BstZ17I | GTATAC | 1 cut(s) | 79 |
| BsuRI | GGCC | 2 cut(s) | 284, 581 |
| BtsCI | GGATG | 1 cut(s) | 454 |
| BtsI | GCAGTG | 1 cut(s) | 605 |
| BtsIMutI | CAGTG | 2 cut(s) | 550, 605 |
| CciI | TCATGA | 1 cut(s) | 346 |
| Cfr13I | GGNCC | 2 cut(s) | 24, 282 |
| Csp6I | GTAC | 2 cut(s) | 31, 330 |
| CviAII | CATG | 6 cut(s) | 34, 57, 82, 214, 339, 347 |
| CviQI | GTAC | 2 cut(s) | 31, 330 |
| DdeI | CTNAG | 4 cut(s) | 116, 372, 497, 534 |
| DpnI | GATC | 2 cut(s) | 205, 320 |
| DpnII | GATC | 2 cut(s) | 203, 318 |
| Eam1104I | CTCTTC | 1 cut(s) | 559 |
| EarI | CTCTTC | 1 cut(s) | 559 |
| Eco47I | GGWCC | 1 cut(s) | 24 |
| Eco57I | CTGAAG | 1 cut(s) | 540 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 423 |
| EcoO109I | RGGNCCY | 1 cut(s) | 24 |
| EcoRII | CCWGG | 2 cut(s) | 284, 292 |
| EcoT22I | ATGCAT | 2 cut(s) | 226, 253 |
| FaeI | CATG | 6 cut(s) | 37, 60, 85, 217, 342, 350 |
| FatI | CATG | 6 cut(s) | 33, 56, 81, 213, 338, 346 |
| FblI | GTMKAC | 1 cut(s) | 78 |
| Fnu4HI | GCNGC | 1 cut(s) | 525 |
| FokI | GGATG | 1 cut(s) | 461 |
| Fsp4HI | GCNGC | 1 cut(s) | 525 |
| FspBI | CTAG | 1 cut(s) | 515 |
| GluI | GCNGC | 1 cut(s) | 525 |
| HaeIII | GGCC | 2 cut(s) | 284, 581 |
| Hin1II | CATG | 6 cut(s) | 37, 60, 85, 217, 342, 350 |
| HincII | GTYRAC | 1 cut(s) | 87 |
| HindII | GTYRAC | 1 cut(s) | 87 |
| Hpy166II | GTNNAC | 2 cut(s) | 79, 87 |
| Hpy188III | TCNNGA | 2 cut(s) | 347, 371 |
| Hpy8I | GTNNAC | 2 cut(s) | 79, 87 |
| Hpy99I | CGWCG | 1 cut(s) | 94 |
| HpyAV | CCTTC | 1 cut(s) | 473 |
| HpyCH4III | ACNGT | 1 cut(s) | 647 |
| HpyCH4V | TGCA | 8 cut(s) | 224, 251, 313, 405, 424, 598, 656, 662 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 257, 430, 524, 566 |
| HpyF3I | CTNAG | 4 cut(s) | 116, 372, 497, 534 |
| Hsp92II | CATG | 6 cut(s) | 37, 60, 85, 217, 342, 350 |
| Kzo9I | GATC | 2 cut(s) | 203, 318 |
| LmnI | GCTCC | 1 cut(s) | 609 |
| Lsp1109I | GCAGC | 1 cut(s) | 511 |
| LweI | GCATC | 1 cut(s) | 558 |
| MaeI | CTAG | 1 cut(s) | 515 |
| MaeIII | GTNAC | 2 cut(s) | 36, 300 |
| MalI | GATC | 2 cut(s) | 205, 320 |
| MboI | GATC | 2 cut(s) | 203, 318 |
| MboII | GAAGA | 2 cut(s) | 488, 546 |
| MfeI | CAATTG | 1 cut(s) | 519 |
| MflI | RGATCY | 1 cut(s) | 203 |
| MluCI | AATT | 4 cut(s) | 95, 519, 572, 625 |
| MnlI | CCTC | 5 cut(s) | 123, 140, 273, 426, 571 |
| Mph1103I | ATGCAT | 2 cut(s) | 226, 253 |
| MslI | CAYNNNNRTG | 1 cut(s) | 543 |
| MspR9I | CCNGG | 2 cut(s) | 286, 294 |
| MunI | CAATTG | 1 cut(s) | 519 |
| Mva1269I | GAATGC | 1 cut(s) | 492 |
| MvaI | CCWGG | 2 cut(s) | 286, 294 |
| MvnI | CGCG | 1 cut(s) | 165 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 257, 430, 524, 566 |
| NdeII | GATC | 2 cut(s) | 203, 318 |
| NlaIII | CATG | 6 cut(s) | 37, 60, 85, 217, 342, 350 |
| NlaIV | GGNNCC | 2 cut(s) | 291, 605 |
| NmuCI | GTSAC | 1 cut(s) | 300 |
| NsiI | ATGCAT | 2 cut(s) | 226, 253 |
| NspI | RCATGY | 2 cut(s) | 37, 85 |
| OliI | CACNNNNGTG | 1 cut(s) | 543 |
| PagI | TCATGA | 1 cut(s) | 346 |
| PciI | ACATGT | 2 cut(s) | 33, 81 |
| PctI | GAATGC | 1 cut(s) | 492 |
| PkrI | GCNGC | 1 cut(s) | 526 |
| PpuMI | RGGWCCY | 1 cut(s) | 24 |
| PscI | ACATGT | 2 cut(s) | 33, 81 |
| Psp5II | RGGWCCY | 1 cut(s) | 24 |
| Psp6I | CCWGG | 2 cut(s) | 284, 292 |
| PspGI | CCWGG | 2 cut(s) | 284, 292 |
| PspN4I | GGNNCC | 2 cut(s) | 291, 605 |
| PspPI | GGNCC | 2 cut(s) | 24, 282 |
| PspPPI | RGGWCCY | 1 cut(s) | 24 |
| PstI | CTGCAG | 1 cut(s) | 600 |
| PsuI | RGATCY | 1 cut(s) | 203 |
| RsaI | GTAC | 2 cut(s) | 32, 331 |
| RsaNI | GTAC | 2 cut(s) | 31, 330 |
| RseI | CAYNNNNRTG | 1 cut(s) | 543 |
| SatI | GCNGC | 1 cut(s) | 525 |
| Sau3AI | GATC | 2 cut(s) | 203, 318 |
| Sau96I | GGNCC | 2 cut(s) | 24, 282 |
| ScrFI | CCNGG | 2 cut(s) | 286, 294 |
| SfaNI | GCATC | 1 cut(s) | 558 |
| SfcI | CTRYAG | 1 cut(s) | 596 |
| SinI | GGWCC | 1 cut(s) | 24 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 543 |
| SmlI | CTYRAG | 1 cut(s) | 61 |
| SmoI | CTYRAG | 1 cut(s) | 61 |
| Sse9I | AATT | 4 cut(s) | 95, 519, 572, 625 |
| SsiI | CCGC | 1 cut(s) | 165 |
| SspMI | CTAG | 1 cut(s) | 515 |
| StyD4I | CCNGG | 2 cut(s) | 284, 292 |
| TaaI | ACNGT | 1 cut(s) | 647 |
| TasI | AATT | 4 cut(s) | 95, 519, 572, 625 |
| TatI | WGTACW | 1 cut(s) | 30 |
| TscAI | CASTG | 2 cut(s) | 550, 605 |
| TseFI | GTSAC | 1 cut(s) | 300 |
| TseI | GCWGC | 1 cut(s) | 524 |
| Tsp45I | GTSAC | 1 cut(s) | 300 |
| TspDTI | ATGAA | 1 cut(s) | 483 |
| TspRI | CASTG | 2 cut(s) | 550, 605 |
| VpaK11BI | GGWCC | 1 cut(s) | 24 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 423 |
| XapI | RAATTY | 1 cut(s) | 95 |
| XceI | RCATGY | 2 cut(s) | 37, 85 |
| XmiI | GTMKAC | 1 cut(s) | 78 |
| XspI | CTAG | 1 cut(s) | 515 |
| Zsp2I | ATGCAT | 2 cut(s) | 226, 253 |