Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 60 - 171 | 3.1e-12 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 422, 432 |
| AccIII | TCCGGA | 1 cut(s) | 127 |
| AciI | CCGC | 2 cut(s) | 82, 287 |
| AcoI | YGGCCR | 1 cut(s) | 142 |
| AcsI | RAATTY | 2 cut(s) | 134, 465 |
| AfaI | GTAC | 1 cut(s) | 515 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 127, 147 |
| AflIII | ACRYGT | 1 cut(s) | 543 |
| AgsI | TTSAA | 1 cut(s) | 350 |
| AhlI | ACTAGT | 1 cut(s) | 521 |
| AjiI | CACGTC | 1 cut(s) | 114 |
| AleI | CACNNNNGTG | 1 cut(s) | 368 |
| AluBI | AGCT | 1 cut(s) | 438 |
| AluI | AGCT | 1 cut(s) | 438 |
| Alw26I | GTCTC | 2 cut(s) | 55, 551 |
| Ama87I | CYCGRG | 1 cut(s) | 222 |
| Aor13HI | TCCGGA | 1 cut(s) | 127 |
| AoxI | GGCC | 2 cut(s) | 142, 248 |
| ApeKI | GCWGC | 1 cut(s) | 374 |
| ApoI | RAATTY | 2 cut(s) | 134, 465 |
| AspS9I | GGNCC | 1 cut(s) | 125 |
| AsuC2I | CCSGG | 3 cut(s) | 122, 141, 416 |
| AsuHPI | GGTGA | 2 cut(s) | 7, 314 |
| AsuII | TTCGAA | 1 cut(s) | 214 |
| AvaI | CYCGRG | 1 cut(s) | 222 |
| AvaII | GGWCC | 1 cut(s) | 125 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 497, 530 |
| BbvI | GCAGC | 1 cut(s) | 361 |
| BccI | CCATC | 2 cut(s) | 17, 235 |
| BcnI | CCSGG | 3 cut(s) | 122, 141, 416 |
| BcoDI | GTCTC | 2 cut(s) | 55, 551 |
| BcuI | ACTAGT | 1 cut(s) | 521 |
| BfaI | CTAG | 2 cut(s) | 65, 522 |
| BglII | AGATCT | 1 cut(s) | 397 |
| BisI | GCNGC | 2 cut(s) | 82, 375 |
| BlsI | GCNGC | 2 cut(s) | 83, 376 |
| Bme1390I | CCNGG | 3 cut(s) | 122, 141, 416 |
| Bme18I | GGWCC | 1 cut(s) | 125 |
| BmeT110I | CYCGRG | 1 cut(s) | 222 |
| BmgBI | CACGTC | 1 cut(s) | 114 |
| BmgT120I | GGNCC | 1 cut(s) | 125 |
| BmiI | GGNNCC | 1 cut(s) | 126 |
| BmrFI | CCNGG | 3 cut(s) | 122, 141, 416 |
| BmrI | ACTGGG | 2 cut(s) | 79, 244 |
| BmsI | GCATC | 1 cut(s) | 62 |
| BmuI | ACTGGG | 2 cut(s) | 79, 244 |
| Bpu14I | TTCGAA | 1 cut(s) | 214 |
| BpuMI | CCSGG | 3 cut(s) | 122, 141, 416 |
| BsaBI | GATNNNNATC | 1 cut(s) | 170 |
| BsaJI | CCNNGG | 2 cut(s) | 121, 325 |
| BsaWI | WCCGGW | 1 cut(s) | 127 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 127, 147 |
| Bse1I | ACTGG | 2 cut(s) | 74, 239 |
| Bse3DI | GCAATG | 1 cut(s) | 187 |
| Bse8I | GATNNNNATC | 1 cut(s) | 170 |
| BseAI | TCCGGA | 1 cut(s) | 127 |
| BseDI | CCNNGG | 2 cut(s) | 121, 325 |
| BseGI | GGATG | 2 cut(s) | 53, 339 |
| BseJI | GATNNNNATC | 1 cut(s) | 170 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 127, 147 |
| BseMI | GCAATG | 1 cut(s) | 187 |
| BseMII | CTCAG | 1 cut(s) | 50 |
| BseNI | ACTGG | 2 cut(s) | 74, 239 |
| BseRI | GAGGAG | 1 cut(s) | 404 |
| BseXI | GCAGC | 1 cut(s) | 361 |
| BshFI | GGCC | 2 cut(s) | 144, 250 |
| BsiHKCI | CYCGRG | 1 cut(s) | 222 |
| BsiSI | CCGG | 4 cut(s) | 121, 128, 141, 415 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 127, 147 |
| BsmAI | GTCTC | 2 cut(s) | 55, 551 |
| BsnI | GGCC | 2 cut(s) | 144, 250 |
| BsoBI | CYCGRG | 1 cut(s) | 222 |
| Bsp119I | TTCGAA | 1 cut(s) | 214 |
| Bsp13I | TCCGGA | 1 cut(s) | 127 |
| Bsp143I | GATC | 2 cut(s) | 165, 397 |
| BspACI | CCGC | 2 cut(s) | 82, 287 |
| BspANI | GGCC | 2 cut(s) | 144, 250 |
| BspCNI | CTCAG | 1 cut(s) | 51 |
| BspEI | TCCGGA | 1 cut(s) | 127 |
| BspLI | GGNNCC | 1 cut(s) | 126 |
| BspT104I | TTCGAA | 1 cut(s) | 214 |
| BsrDI | GCAATG | 1 cut(s) | 187 |
| BsrI | ACTGG | 2 cut(s) | 74, 239 |
| BssECI | CCNNGG | 2 cut(s) | 121, 325 |
| BssMI | GATC | 2 cut(s) | 165, 397 |
| BssT1I | CCWWGG | 1 cut(s) | 325 |
| Bst4CI | ACNGT | 3 cut(s) | 27, 155, 569 |
| Bst6I | CTCTTC | 1 cut(s) | 549 |
| BstBI | TTCGAA | 1 cut(s) | 214 |
| BstDEI | CTNAG | 1 cut(s) | 59 |
| BstF5I | GGATG | 2 cut(s) | 53, 339 |
| BstKTI | GATC | 2 cut(s) | 168, 400 |
| BstMAI | GTCTC | 2 cut(s) | 55, 551 |
| BstMBI | GATC | 2 cut(s) | 165, 397 |
| BstNSI | RCATGY | 1 cut(s) | 263 |
| BstSCI | CCNGG | 3 cut(s) | 120, 139, 414 |
| BstV1I | GCAGC | 1 cut(s) | 361 |
| BstX2I | RGATCY | 1 cut(s) | 397 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 370 |
| BstYI | RGATCY | 1 cut(s) | 397 |
| BsuRI | GGCC | 2 cut(s) | 144, 250 |
| BtrI | CACGTC | 1 cut(s) | 114 |
| BtsCI | GGATG | 2 cut(s) | 53, 339 |
| BtsIMutI | CAGTG | 3 cut(s) | 108, 151, 232 |
| Cfr13I | GGNCC | 1 cut(s) | 125 |
| Csp6I | GTAC | 1 cut(s) | 514 |
| CviAII | CATG | 2 cut(s) | 260, 482 |
| CviJI | RGCY | 7 cut(s) | 81, 144, 194, 250, 374, 414, 438 |
| CviKI_1 | RGCY | 7 cut(s) | 81, 144, 194, 250, 374, 414, 438 |
| CviQI | GTAC | 1 cut(s) | 514 |
| DdeI | CTNAG | 1 cut(s) | 59 |
| DpnI | GATC | 2 cut(s) | 167, 399 |
| DpnII | GATC | 2 cut(s) | 165, 397 |
| EaeI | YGGCCR | 1 cut(s) | 142 |
| Eam1104I | CTCTTC | 1 cut(s) | 549 |
| EarI | CTCTTC | 1 cut(s) | 549 |
| Eco130I | CCWWGG | 1 cut(s) | 325 |
| Eco147I | AGGCCT | 1 cut(s) | 250 |
| Eco47I | GGWCC | 1 cut(s) | 125 |
| Eco88I | CYCGRG | 1 cut(s) | 222 |
| EcoRI | GAATTC | 1 cut(s) | 465 |
| EcoT14I | CCWWGG | 1 cut(s) | 325 |
| ErhI | CCWWGG | 1 cut(s) | 325 |
| FaeI | CATG | 2 cut(s) | 263, 485 |
| FaiI | YATR | 7 cut(s) | 93, 261, 281, 422, 432, 474, 483 |
| FatI | CATG | 2 cut(s) | 259, 481 |
| Fnu4HI | GCNGC | 2 cut(s) | 82, 375 |
| FokI | GGATG | 2 cut(s) | 40, 346 |
| Fsp4HI | GCNGC | 2 cut(s) | 82, 375 |
| FspBI | CTAG | 2 cut(s) | 65, 522 |
| GluI | GCNGC | 2 cut(s) | 82, 375 |
| HaeIII | GGCC | 2 cut(s) | 144, 250 |
| HapII | CCGG | 4 cut(s) | 121, 128, 141, 415 |
| Hin1II | CATG | 2 cut(s) | 263, 485 |
| HinfI | GANTC | 2 cut(s) | 356, 559 |
| HpaII | CCGG | 4 cut(s) | 121, 128, 141, 415 |
| HphI | GGTGA | 2 cut(s) | 7, 314 |
| Hpy166II | GTNNAC | 1 cut(s) | 514 |
| Hpy188III | TCNNGA | 2 cut(s) | 128, 563 |
| Hpy8I | GTNNAC | 1 cut(s) | 514 |
| HpyCH4III | ACNGT | 3 cut(s) | 27, 155, 569 |
| HpyCH4IV | ACGT | 2 cut(s) | 113, 543 |
| HpyCH4V | TGCA | 2 cut(s) | 180, 263 |
| HpyF3I | CTNAG | 1 cut(s) | 59 |
| HpySE526I | ACGT | 2 cut(s) | 113, 543 |
| Hsp92II | CATG | 2 cut(s) | 263, 485 |
| Kpn2I | TCCGGA | 1 cut(s) | 127 |
| Kzo9I | GATC | 2 cut(s) | 165, 397 |
| LmnI | GCTCC | 1 cut(s) | 161 |
| Lsp1109I | GCAGC | 1 cut(s) | 361 |
| LweI | GCATC | 1 cut(s) | 62 |
| MaeI | CTAG | 2 cut(s) | 65, 522 |
| MaeII | ACGT | 2 cut(s) | 113, 543 |
| MaeIII | GTNAC | 1 cut(s) | 226 |
| MalI | GATC | 2 cut(s) | 167, 399 |
| MboI | GATC | 2 cut(s) | 165, 397 |
| MboII | GAAGA | 3 cut(s) | 302, 305, 566 |
| MflI | RGATCY | 1 cut(s) | 397 |
| MluCI | AATT | 4 cut(s) | 74, 134, 465, 526 |
| MlyI | GAGTC | 2 cut(s) | 350, 553 |
| MmeI | TCCRAC | 2 cut(s) | 54, 311 |
| MnlI | CCTC | 6 cut(s) | 141, 179, 191, 231, 283, 382 |
| MroI | TCCGGA | 1 cut(s) | 127 |
| MseI | TTAA | 3 cut(s) | 276, 342, 381 |
| MslI | CAYNNNNRTG | 1 cut(s) | 368 |
| MspI | CCGG | 4 cut(s) | 121, 128, 141, 415 |
| MspR9I | CCNGG | 3 cut(s) | 122, 141, 416 |
| NciI | CCSGG | 3 cut(s) | 122, 141, 416 |
| NdeII | GATC | 2 cut(s) | 165, 397 |
| NlaIII | CATG | 2 cut(s) | 263, 485 |
| NlaIV | GGNNCC | 1 cut(s) | 126 |
| NmuCI | GTSAC | 1 cut(s) | 226 |
| NspI | RCATGY | 1 cut(s) | 263 |
| NspV | TTCGAA | 1 cut(s) | 214 |
| OliI | CACNNNNGTG | 1 cut(s) | 368 |
| PaeR7I | CTCGAG | 1 cut(s) | 222 |
| PceI | AGGCCT | 1 cut(s) | 250 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 220 |
| PkrI | GCNGC | 2 cut(s) | 83, 376 |
| PleI | GAGTC | 2 cut(s) | 350, 553 |
| PpsI | GAGTC | 2 cut(s) | 350, 553 |
| PsiI | TTATAA | 2 cut(s) | 422, 432 |
| PspN4I | GGNNCC | 1 cut(s) | 126 |
| PspPI | GGNCC | 1 cut(s) | 125 |
| PspXI | VCTCGAGB | 1 cut(s) | 222 |
| PsuI | RGATCY | 1 cut(s) | 397 |
| RsaI | GTAC | 1 cut(s) | 515 |
| RsaNI | GTAC | 1 cut(s) | 514 |
| RseI | CAYNNNNRTG | 1 cut(s) | 368 |
| SaqAI | TTAA | 3 cut(s) | 276, 342, 381 |
| SatI | GCNGC | 2 cut(s) | 82, 375 |
| Sau3AI | GATC | 2 cut(s) | 165, 397 |
| Sau96I | GGNCC | 1 cut(s) | 125 |
| SchI | GAGTC | 2 cut(s) | 350, 553 |
| ScrFI | CCNGG | 3 cut(s) | 122, 141, 416 |
| SetI | ASST | 8 cut(s) | 48, 116, 179, 223, 331, 440, 519, 546 |
| SfaNI | GCATC | 1 cut(s) | 62 |
| Sfr274I | CTCGAG | 1 cut(s) | 222 |
| SfuI | TTCGAA | 1 cut(s) | 214 |
| SinI | GGWCC | 1 cut(s) | 125 |
| SlaI | CTCGAG | 1 cut(s) | 222 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 368 |
| SmlI | CTYRAG | 1 cut(s) | 222 |
| SmoI | CTYRAG | 1 cut(s) | 222 |
| SpeI | ACTAGT | 1 cut(s) | 521 |
| Sse9I | AATT | 4 cut(s) | 74, 134, 465, 526 |
| SseBI | AGGCCT | 1 cut(s) | 250 |
| SsiI | CCGC | 2 cut(s) | 82, 287 |
| SspMI | CTAG | 2 cut(s) | 65, 522 |
| StuI | AGGCCT | 1 cut(s) | 250 |
| StyD4I | CCNGG | 3 cut(s) | 120, 139, 414 |
| StyI | CCWWGG | 1 cut(s) | 325 |
| TaaI | ACNGT | 3 cut(s) | 27, 155, 569 |
| TaiI | ACGT | 2 cut(s) | 116, 546 |
| TaqI | TCGA | 2 cut(s) | 214, 223 |
| TasI | AATT | 4 cut(s) | 74, 134, 465, 526 |
| TauI | GCSGC | 1 cut(s) | 84 |
| Tru1I | TTAA | 3 cut(s) | 276, 342, 381 |
| Tru9I | TTAA | 3 cut(s) | 276, 342, 381 |
| TscAI | CASTG | 3 cut(s) | 108, 158, 239 |
| TseFI | GTSAC | 1 cut(s) | 226 |
| TseI | GCWGC | 1 cut(s) | 374 |
| Tsp45I | GTSAC | 1 cut(s) | 226 |
| TspDTI | ATGAA | 2 cut(s) | 350, 498 |
| TspRI | CASTG | 3 cut(s) | 108, 158, 239 |
| VpaK11BI | GGWCC | 1 cut(s) | 125 |
| XapI | RAATTY | 2 cut(s) | 134, 465 |
| XceI | RCATGY | 1 cut(s) | 263 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 488 |
| XhoI | CTCGAG | 1 cut(s) | 222 |
| XspI | CTAG | 2 cut(s) | 65, 522 |