Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 366 |
| AccB1I | GGYRCC | 1 cut(s) | 366 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 225 |
| AccI | GTMKAC | 2 cut(s) | 29, 350 |
| AciI | CCGC | 1 cut(s) | 443 |
| AclWI | GGATC | 1 cut(s) | 116 |
| AcsI | RAATTY | 1 cut(s) | 383 |
| AfaI | GTAC | 1 cut(s) | 368 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 49, 225 |
| AgsI | TTSAA | 1 cut(s) | 151 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 214 |
| AjnI | CCWGG | 2 cut(s) | 125, 134 |
| AluBI | AGCT | 6 cut(s) | 61, 187, 297, 377, 399, 407 |
| AluI | AGCT | 6 cut(s) | 61, 187, 297, 377, 399, 407 |
| Alw21I | GWGCWC | 1 cut(s) | 79 |
| AlwI | GGATC | 1 cut(s) | 116 |
| Ama87I | CYCGRG | 1 cut(s) | 16 |
| AoxI | GGCC | 2 cut(s) | 137, 390 |
| ApoI | RAATTY | 1 cut(s) | 383 |
| Asp718I | GGTACC | 1 cut(s) | 366 |
| AspS9I | GGNCC | 2 cut(s) | 138, 391 |
| AsuHPI | GGTGA | 3 cut(s) | 178, 241, 367 |
| AvaI | CYCGRG | 1 cut(s) | 16 |
| BanI | GGYRCC | 1 cut(s) | 366 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 350, 382 |
| Bbv12I | GWGCWC | 1 cut(s) | 79 |
| BccI | CCATC | 1 cut(s) | 163 |
| BciT130I | CCWGG | 2 cut(s) | 127, 136 |
| BfaI | CTAG | 2 cut(s) | 5, 378 |
| Bme1390I | CCNGG | 2 cut(s) | 127, 136 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 214 |
| BmeT110I | CYCGRG | 1 cut(s) | 16 |
| BmgT120I | GGNCC | 2 cut(s) | 138, 391 |
| BmiI | GGNNCC | 5 cut(s) | 41, 100, 140, 368, 393 |
| BmrFI | CCNGG | 2 cut(s) | 127, 136 |
| BmsI | GCATC | 1 cut(s) | 261 |
| BpmI | CTGGAG | 1 cut(s) | 85 |
| BpuEI | CTTGAG | 1 cut(s) | 319 |
| BsaJI | CCNNGG | 2 cut(s) | 125, 134 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 49, 225 |
| BseBI | CCWGG | 2 cut(s) | 127, 136 |
| BseDI | CCNNGG | 2 cut(s) | 125, 134 |
| BseGI | GGATG | 1 cut(s) | 250 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 49, 225 |
| BseMII | CTCAG | 1 cut(s) | 422 |
| BseRI | GAGGAG | 2 cut(s) | 52, 275 |
| BshFI | GGCC | 2 cut(s) | 139, 392 |
| BshNI | GGYRCC | 1 cut(s) | 366 |
| BsiHKAI | GWGCWC | 1 cut(s) | 79 |
| BsiHKCI | CYCGRG | 1 cut(s) | 16 |
| BslFI | GGGAC | 1 cut(s) | 397 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 49, 225 |
| BsmFI | GGGAC | 1 cut(s) | 397 |
| BsnI | GGCC | 2 cut(s) | 139, 392 |
| BsoBI | CYCGRG | 1 cut(s) | 16 |
| Bsp1286I | GDGCHC | 1 cut(s) | 79 |
| Bsp143I | GATC | 3 cut(s) | 121, 199, 313 |
| BspACI | CCGC | 1 cut(s) | 443 |
| BspANI | GGCC | 2 cut(s) | 139, 392 |
| BspCNI | CTCAG | 1 cut(s) | 421 |
| BspLI | GGNNCC | 5 cut(s) | 41, 100, 140, 368, 393 |
| BspPI | GGATC | 1 cut(s) | 116 |
| BspQI | GCTCTTC | 1 cut(s) | 177 |
| BspT107I | GGYRCC | 1 cut(s) | 366 |
| BssECI | CCNNGG | 2 cut(s) | 125, 134 |
| BssMI | GATC | 3 cut(s) | 121, 199, 313 |
| BssNAI | GTATAC | 2 cut(s) | 30, 351 |
| Bst1107I | GTATAC | 2 cut(s) | 30, 351 |
| Bst2UI | CCWGG | 2 cut(s) | 127, 136 |
| Bst4CI | ACNGT | 1 cut(s) | 355 |
| Bst6I | CTCTTC | 2 cut(s) | 177, 353 |
| BstDEI | CTNAG | 3 cut(s) | 178, 213, 408 |
| BstEII | GGTNACC | 1 cut(s) | 129 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 47 |
| BstF5I | GGATG | 1 cut(s) | 250 |
| BstKTI | GATC | 3 cut(s) | 124, 202, 316 |
| BstMBI | GATC | 3 cut(s) | 121, 199, 313 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 325 |
| BstNI | CCWGG | 2 cut(s) | 127, 136 |
| BstPI | GGTNACC | 1 cut(s) | 129 |
| BstSCI | CCNGG | 2 cut(s) | 125, 134 |
| BstZ17I | GTATAC | 2 cut(s) | 30, 351 |
| BsuRI | GGCC | 2 cut(s) | 139, 392 |
| BtsCI | GGATG | 1 cut(s) | 250 |
| BtsIMutI | CAGTG | 1 cut(s) | 117 |
| Cfr13I | GGNCC | 2 cut(s) | 138, 391 |
| Csp6I | GTAC | 1 cut(s) | 367 |
| CviAII | CATG | 5 cut(s) | 33, 163, 341, 371, 416 |
| CviQI | GTAC | 1 cut(s) | 367 |
| DdeI | CTNAG | 3 cut(s) | 178, 213, 408 |
| DpnI | GATC | 3 cut(s) | 123, 201, 315 |
| DpnII | GATC | 3 cut(s) | 121, 199, 313 |
| DriI | GACNNNNNGTC | 1 cut(s) | 214 |
| Eam1104I | CTCTTC | 2 cut(s) | 177, 353 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 214 |
| EarI | CTCTTC | 2 cut(s) | 177, 353 |
| Eco88I | CYCGRG | 1 cut(s) | 16 |
| Eco91I | GGTNACC | 1 cut(s) | 129 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 47 |
| EcoO109I | RGGNCCY | 1 cut(s) | 138 |
| EcoO65I | GGTNACC | 1 cut(s) | 129 |
| EcoRII | CCWGG | 2 cut(s) | 125, 134 |
| FaeI | CATG | 5 cut(s) | 36, 166, 344, 374, 419 |
| FaqI | GGGAC | 1 cut(s) | 397 |
| FatI | CATG | 5 cut(s) | 32, 162, 340, 370, 415 |
| FblI | GTMKAC | 2 cut(s) | 29, 350 |
| FokI | GGATG | 1 cut(s) | 257 |
| FspBI | CTAG | 2 cut(s) | 5, 378 |
| GsuI | CTGGAG | 1 cut(s) | 85 |
| HaeIII | GGCC | 2 cut(s) | 139, 392 |
| Hin1II | CATG | 5 cut(s) | 36, 166, 344, 374, 419 |
| HindIII | AAGCTT | 1 cut(s) | 295 |
| HinfI | GANTC | 2 cut(s) | 23, 81 |
| HphI | GGTGA | 3 cut(s) | 178, 241, 367 |
| Hpy166II | GTNNAC | 2 cut(s) | 30, 351 |
| Hpy188I | TCNGA | 1 cut(s) | 199 |
| Hpy188III | TCNNGA | 1 cut(s) | 219 |
| Hpy8I | GTNNAC | 2 cut(s) | 30, 351 |
| HpyAV | CCTTC | 1 cut(s) | 167 |
| HpyCH4III | ACNGT | 1 cut(s) | 355 |
| HpyCH4V | TGCA | 1 cut(s) | 67 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 325 |
| HpyF3I | CTNAG | 3 cut(s) | 178, 213, 408 |
| Hsp92II | CATG | 5 cut(s) | 36, 166, 344, 374, 419 |
| KpnI | GGTACC | 1 cut(s) | 370 |
| Kzo9I | GATC | 3 cut(s) | 121, 199, 313 |
| LguI | GCTCTTC | 1 cut(s) | 177 |
| LmnI | GCTCC | 4 cut(s) | 39, 58, 104, 404 |
| LpnPI | CCDG | 7 cut(s) | 56, 112, 115, 121, 139, 148, 232 |
| LweI | GCATC | 1 cut(s) | 261 |
| MaeI | CTAG | 2 cut(s) | 5, 378 |
| MaeIII | GTNAC | 1 cut(s) | 129 |
| MalI | GATC | 3 cut(s) | 123, 201, 315 |
| MboI | GATC | 3 cut(s) | 121, 199, 313 |
| MboII | GAAGA | 2 cut(s) | 194, 370 |
| MhlI | GDGCHC | 1 cut(s) | 79 |
| MluCI | AATT | 4 cut(s) | 204, 276, 321, 383 |
| MmeI | TCCRAC | 1 cut(s) | 222 |
| MnlI | CCTC | 4 cut(s) | 30, 253, 256, 432 |
| MseI | TTAA | 1 cut(s) | 293 |
| MslI | CAYNNNNRTG | 2 cut(s) | 110, 167 |
| MspR9I | CCNGG | 2 cut(s) | 127, 136 |
| MvaI | CCWGG | 2 cut(s) | 127, 136 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 325 |
| NdeII | GATC | 3 cut(s) | 121, 199, 313 |
| NlaIII | CATG | 5 cut(s) | 36, 166, 344, 374, 419 |
| NlaIV | GGNNCC | 5 cut(s) | 41, 100, 140, 368, 393 |
| PciSI | GCTCTTC | 1 cut(s) | 177 |
| PfeI | GAWTC | 2 cut(s) | 23, 81 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 225 |
| Psp6I | CCWGG | 2 cut(s) | 125, 134 |
| PspEI | GGTNACC | 1 cut(s) | 129 |
| PspGI | CCWGG | 2 cut(s) | 125, 134 |
| PspN4I | GGNNCC | 5 cut(s) | 41, 100, 140, 368, 393 |
| PspPI | GGNCC | 2 cut(s) | 138, 391 |
| RsaI | GTAC | 1 cut(s) | 368 |
| RsaNI | GTAC | 1 cut(s) | 367 |
| RseI | CAYNNNNRTG | 2 cut(s) | 110, 167 |
| SapI | GCTCTTC | 1 cut(s) | 177 |
| SaqAI | TTAA | 1 cut(s) | 293 |
| Sau3AI | GATC | 3 cut(s) | 121, 199, 313 |
| Sau96I | GGNCC | 2 cut(s) | 138, 391 |
| ScrFI | CCNGG | 2 cut(s) | 127, 136 |
| SduI | GDGCHC | 1 cut(s) | 79 |
| SetI | ASST | 6 cut(s) | 63, 189, 299, 379, 401, 409 |
| SfaNI | GCATC | 1 cut(s) | 261 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 110, 167 |
| SmlI | CTYRAG | 1 cut(s) | 298 |
| SmoI | CTYRAG | 1 cut(s) | 298 |
| Sse9I | AATT | 4 cut(s) | 204, 276, 321, 383 |
| SsiI | CCGC | 1 cut(s) | 443 |
| SspMI | CTAG | 2 cut(s) | 5, 378 |
| StyD4I | CCNGG | 2 cut(s) | 125, 134 |
| TaaI | ACNGT | 1 cut(s) | 355 |
| TaqI | TCGA | 1 cut(s) | 79 |
| TasI | AATT | 4 cut(s) | 204, 276, 321, 383 |
| TfiI | GAWTC | 2 cut(s) | 23, 81 |
| Tru1I | TTAA | 1 cut(s) | 293 |
| Tru9I | TTAA | 1 cut(s) | 293 |
| TscAI | CASTG | 1 cut(s) | 117 |
| TspRI | CASTG | 1 cut(s) | 117 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 225 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 47 |
| XapI | RAATTY | 1 cut(s) | 383 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 92 |
| XmiI | GTMKAC | 2 cut(s) | 29, 350 |
| XspI | CTAG | 2 cut(s) | 5, 378 |