ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Methyltransf_4 | PF02390 | 123 - 259 | 1.4e-29 | Putative methyltransferase |
| PPR_3 | PF13812 | 478 - 539 | 1.6e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 487 - 518 | 5e-08 | PPR repeat |
| PPR_2 | PF13041 | 490 - 538 | 1.7e-14 | PPR repeat family |
| PPR_2 | PF13041 | 525 - 574 | 9.8e-13 | PPR repeat family |
| PPR_3 | PF13812 | 549 - 609 | 5.1e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 557 - 589 | 3.3e-09 | PPR repeat |
| PPR_2 | PF13041 | 560 - 609 | 2.2e-16 | PPR repeat family |
| PPR | PF01535 | 564 - 593 | 8.7e-08 | PPR repeat |
| PPR_1 | PF12854 | 592 - 624 | 4.1e-06 | PPR repeat |
| PPR_2 | PF13041 | 596 - 632 | 9.1e-07 | PPR repeat family |
| PPR | PF01535 | 598 - 626 | 7.6e-06 | PPR repeat |
| PPR_2 | PF13041 | 699 - 748 | 4.9e-19 | PPR repeat family |
| PPR_1 | PF12854 | 699 - 728 | 1.6e-07 | PPR repeat |
| PPR_3 | PF13812 | 699 - 746 | 1.5e-06 | Pentatricopeptide repeat domain |
| PPR_3 | PF13812 | 722 - 779 | 1.5e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 730 - 761 | 5.5e-09 | PPR repeat |
| PPR_2 | PF13041 | 737 - 783 | 1.2e-12 | PPR repeat family |
| PPR | PF01535 | 737 - 767 | 3.9e-06 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 735 |
| AccB1I | GGYRCC | 4 cut(s) | 118, 1465, 1634, 1781 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 262 |
| AccBSI | CCGCTC | 2 cut(s) | 370, 1194 |
| AccI | GTMKAC | 2 cut(s) | 569, 2315 |
| AccII | CGCG | 5 cut(s) | 1089, 1200, 1239, 1618, 1623 |
| AclWI | GGATC | 3 cut(s) | 608, 1027, 1356 |
| AcsI | RAATTY | 5 cut(s) | 870, 881, 897, 1346, 2203 |
| AcuI | CTGAAG | 1 cut(s) | 800 |
| AcyI | GRCGYC | 6 cut(s) | 119, 732, 1296, 1353, 1466, 1782 |
| AdeI | CACNNNGTG | 2 cut(s) | 1432, 1540 |
| AfaI | GTAC | 5 cut(s) | 654, 726, 914, 1415, 1959 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 262, 703, 922, 1349, 1562, 2440 |
| AflIII | ACRYGT | 1 cut(s) | 286 |
| AgsI | TTSAA | 8 cut(s) | 62, 600, 800, 887, 1324, 1378, 1814, 1978 |
| AjiI | CACGTC | 1 cut(s) | 271 |
| AjnI | CCWGG | 6 cut(s) | 106, 255, 577, 1536, 2057, 2420 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1304, 1336 |
| AluBI | AGCT | 9 cut(s) | 193, 303, 505, 692, 1732, 1817, 1893, 2363, 2428 |
| AluI | AGCT | 9 cut(s) | 193, 303, 505, 692, 1732, 1817, 1893, 2363, 2428 |
| Alw21I | GWGCWC | 2 cut(s) | 1545, 1895 |
| Alw26I | GTCTC | 3 cut(s) | 637, 1520, 2075 |
| AlwI | GGATC | 3 cut(s) | 608, 1027, 1356 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 262 |
| AoxI | GGCC | 5 cut(s) | 159, 213, 924, 1043, 1991 |
| ApeKI | GCWGC | 2 cut(s) | 33, 1257 |
| ApoI | RAATTY | 5 cut(s) | 870, 881, 897, 1346, 2203 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 55, 87, 2270, 2302 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2472 |
| AspLEI | GCGC | 8 cut(s) | 121, 1068, 1202, 1241, 1468, 1623, 1784, 1900 |
| AspS9I | GGNCC | 5 cut(s) | 205, 355, 581, 1044, 1371 |
| AsuC2I | CCSGG | 2 cut(s) | 203, 1146 |
| AsuII | TTCGAA | 2 cut(s) | 88, 2289 |
| AvaII | GGWCC | 4 cut(s) | 205, 355, 581, 1371 |
| BaeGI | GKGCMC | 3 cut(s) | 611, 1575, 2015 |
| BanI | GGYRCC | 4 cut(s) | 118, 1465, 1634, 1781 |
| BanII | GRGCYC | 4 cut(s) | 203, 1095, 1895, 2343 |
| BauI | CACGAG | 1 cut(s) | 1409 |
| BbsI | GAAGAC | 1 cut(s) | 1269 |
| Bbv12I | GWGCWC | 2 cut(s) | 1545, 1895 |
| BbvCI | CCTCAGC | 2 cut(s) | 194, 1737 |
| BbvI | GCAGC | 2 cut(s) | 20, 1269 |
| BccI | CCATC | 6 cut(s) | 822, 1181, 1555, 1699, 1703, 1756 |
| BceAI | ACGGC | 6 cut(s) | 106, 132, 950, 980, 1309, 1988 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1538, 1572 |
| BciT130I | CCWGG | 6 cut(s) | 108, 257, 579, 1538, 2059, 2422 |
| BclI | TGATCA | 3 cut(s) | 1494, 2071, 2226 |
| BcnI | CCSGG | 2 cut(s) | 203, 1146 |
| BcoDI | GTCTC | 3 cut(s) | 637, 1520, 2075 |
| BfaI | CTAG | 1 cut(s) | 78 |
| BfmI | CTRYAG | 2 cut(s) | 1444, 2373 |
| BfoI | RGCGCY | 5 cut(s) | 122, 1069, 1469, 1785, 1901 |
| BisI | GCNGC | 5 cut(s) | 34, 368, 1183, 1258, 1619 |
| BlsI | GCNGC | 5 cut(s) | 35, 369, 1184, 1259, 1620 |
| Bme1390I | CCNGG | 8 cut(s) | 108, 203, 257, 579, 1146, 1538, 2059, 2422 |
| Bme18I | GGWCC | 4 cut(s) | 205, 355, 581, 1371 |
| BmgBI | CACGTC | 1 cut(s) | 271 |
| BmgT120I | GGNCC | 5 cut(s) | 205, 355, 581, 1044, 1371 |
| BmiI | GGNNCC | 8 cut(s) | 120, 200, 356, 357, 1046, 1467, 1636, 1783 |
| BmrFI | CCNGG | 8 cut(s) | 108, 203, 257, 579, 1146, 1538, 2059, 2422 |
| BmrI | ACTGGG | 2 cut(s) | 183, 272 |
| BmsI | GCATC | 5 cut(s) | 579, 643, 648, 1244, 1939 |
| BmuI | ACTGGG | 2 cut(s) | 183, 272 |
| BpiI | GAAGAC | 1 cut(s) | 1269 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2077, 2109 |
| Bpu10I | CCTNAGC | 2 cut(s) | 194, 1737 |
| Bpu14I | TTCGAA | 2 cut(s) | 88, 2289 |
| BpuEI | CTTGAG | 1 cut(s) | 761 |
| BpuMI | CCSGG | 2 cut(s) | 203, 1146 |
| BsaBI | GATNNNNATC | 2 cut(s) | 234, 339 |
| BsaHI | GRCGYC | 6 cut(s) | 119, 732, 1296, 1353, 1466, 1782 |
| BsaJI | CCNNGG | 7 cut(s) | 106, 216, 255, 577, 697, 1144, 2421 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1115, 1145, 1820, 1850 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 262, 703, 922, 1349, 1562, 2440 |
| Bse1I | ACTGG | 6 cut(s) | 178, 267, 459, 567, 1046, 2030 |
| Bse3DI | GCAATG | 2 cut(s) | 362, 2397 |
| Bse8I | GATNNNNATC | 2 cut(s) | 234, 339 |
| BseBI | CCWGG | 6 cut(s) | 108, 257, 579, 1538, 2059, 2422 |
| BseDI | CCNNGG | 7 cut(s) | 106, 216, 255, 577, 697, 1144, 2421 |
| BseGI | GGATG | 6 cut(s) | 833, 1176, 1714, 1762, 1954, 2179 |
| BseJI | GATNNNNATC | 2 cut(s) | 234, 339 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 262, 703, 922, 1349, 1562, 2440 |
| BseMI | GCAATG | 2 cut(s) | 362, 2397 |
| BseMII | CTCAG | 2 cut(s) | 185, 1728 |
| BseNI | ACTGG | 6 cut(s) | 178, 267, 459, 567, 1046, 2030 |
| BseRI | GAGGAG | 4 cut(s) | 211, 979, 1178, 1214 |
| BseSI | GKGCMC | 3 cut(s) | 611, 1575, 2015 |
| BseXI | GCAGC | 2 cut(s) | 20, 1269 |
| BseYI | CCCAGC | 1 cut(s) | 505 |
| BsgI | GTGCAG | 2 cut(s) | 1515, 1892 |
| Bsh1236I | CGCG | 5 cut(s) | 1089, 1200, 1239, 1618, 1623 |
| BshFI | GGCC | 5 cut(s) | 161, 215, 926, 1045, 1993 |
| BshNI | GGYRCC | 4 cut(s) | 118, 1465, 1634, 1781 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1545, 1895 |
| BsiSI | CCGG | 3 cut(s) | 203, 1146, 1994 |
| BslFI | GGGAC | 3 cut(s) | 368, 465, 953 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 262, 703, 922, 1349, 1562, 2440 |
| BsmAI | GTCTC | 3 cut(s) | 637, 1520, 2075 |
| BsmBI | CGTCTC | 2 cut(s) | 637, 2075 |
| BsmFI | GGGAC | 3 cut(s) | 368, 465, 953 |
| BsmI | GAATGC | 3 cut(s) | 1319, 1384, 2503 |
| BsnI | GGCC | 5 cut(s) | 161, 215, 926, 1045, 1993 |
| Bsp119I | TTCGAA | 2 cut(s) | 88, 2289 |
| Bsp1286I | GDGCHC | 8 cut(s) | 203, 611, 1095, 1545, 1575, 1895, 2015, 2343 |
| Bsp1407I | TGTACA | 1 cut(s) | 652 |
| Bsp143I | GATC | 7 cut(s) | 229, 613, 1032, 1361, 1494, 2071, 2226 |
| BspANI | GGCC | 5 cut(s) | 161, 215, 926, 1045, 1993 |
| BspCNI | CTCAG | 2 cut(s) | 186, 1729 |
| BspFNI | CGCG | 5 cut(s) | 1089, 1200, 1239, 1618, 1623 |
| BspHI | TCATGA | 1 cut(s) | 2103 |
| BspLI | GGNNCC | 8 cut(s) | 120, 200, 356, 357, 1046, 1467, 1636, 1783 |
| BspPI | GGATC | 3 cut(s) | 608, 1027, 1356 |
| BspQI | GCTCTTC | 1 cut(s) | 310 |
| BspT104I | TTCGAA | 2 cut(s) | 88, 2289 |
| BspT107I | GGYRCC | 4 cut(s) | 118, 1465, 1634, 1781 |
| BsrBI | CCGCTC | 2 cut(s) | 370, 1194 |
| BsrDI | GCAATG | 2 cut(s) | 362, 2397 |
| BsrGI | TGTACA | 1 cut(s) | 652 |
| BsrI | ACTGG | 6 cut(s) | 178, 267, 459, 567, 1046, 2030 |
| BssECI | CCNNGG | 7 cut(s) | 106, 216, 255, 577, 697, 1144, 2421 |
| BssMI | GATC | 7 cut(s) | 229, 613, 1032, 1361, 1494, 2071, 2226 |
| BssNI | GRCGYC | 6 cut(s) | 119, 732, 1296, 1353, 1466, 1782 |
| BssSI | CACGAG | 1 cut(s) | 1409 |
| BssT1I | CCWWGG | 1 cut(s) | 216 |
| Bst2BI | CACGAG | 1 cut(s) | 1409 |
| Bst2UI | CCWGG | 6 cut(s) | 108, 257, 579, 1538, 2059, 2422 |
| Bst4CI | ACNGT | 9 cut(s) | 41, 717, 821, 1021, 1445, 1506, 1962, 2377, 2414 |
| Bst6I | CTCTTC | 6 cut(s) | 145, 310, 951, 1274, 1871, 1961 |
| BstACI | GRCGYC | 6 cut(s) | 119, 732, 1296, 1353, 1466, 1782 |
| BstAUI | TGTACA | 1 cut(s) | 652 |
| BstBI | TTCGAA | 2 cut(s) | 88, 2289 |
| BstC8I | GCNNGC | 7 cut(s) | 417, 809, 924, 1091, 1557, 1734, 1991 |
| BstDEI | CTNAG | 5 cut(s) | 194, 299, 430, 512, 1737 |
| BstDSI | CCRYGG | 1 cut(s) | 697 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2438 |
| BstF5I | GGATG | 6 cut(s) | 833, 1176, 1714, 1762, 1954, 2179 |
| BstFNI | CGCG | 5 cut(s) | 1089, 1200, 1239, 1618, 1623 |
| BstH2I | RGCGCY | 5 cut(s) | 122, 1069, 1469, 1785, 1901 |
| BstHHI | GCGC | 8 cut(s) | 121, 1068, 1202, 1241, 1468, 1623, 1784, 1900 |
| BstKTI | GATC | 7 cut(s) | 232, 616, 1035, 1364, 1497, 2074, 2229 |
| BstMAI | GTCTC | 3 cut(s) | 637, 1520, 2075 |
| BstMBI | GATC | 7 cut(s) | 229, 613, 1032, 1361, 1494, 2071, 2226 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1191, 1293, 1729 |
| BstNI | CCWGG | 6 cut(s) | 108, 257, 579, 1538, 2059, 2422 |
| BstNSI | RCATGY | 1 cut(s) | 290 |
| BstSCI | CCNGG | 8 cut(s) | 106, 201, 255, 577, 1144, 1536, 2057, 2420 |
| BstSFI | CTRYAG | 2 cut(s) | 1444, 2373 |
| BstSLI | GKGCMC | 3 cut(s) | 611, 1575, 2015 |
| BstUI | CGCG | 5 cut(s) | 1089, 1200, 1239, 1618, 1623 |
| BstV1I | GCAGC | 2 cut(s) | 20, 1269 |
| BstV2I | GAAGAC | 1 cut(s) | 1269 |
| BstX2I | RGATCY | 1 cut(s) | 613 |
| BstYI | RGATCY | 1 cut(s) | 613 |
| BsuRI | GGCC | 5 cut(s) | 161, 215, 926, 1045, 1993 |
| BtgI | CCRYGG | 1 cut(s) | 697 |
| BtgZI | GCGATG | 1 cut(s) | 1574 |
| BtrI | CACGTC | 1 cut(s) | 271 |
| BtsCI | GGATG | 6 cut(s) | 833, 1176, 1714, 1762, 1954, 2179 |
| BtsI | GCAGTG | 1 cut(s) | 28 |
| BtsIMutI | CAGTG | 4 cut(s) | 28, 584, 1502, 2419 |
| Cac8I | GCNNGC | 7 cut(s) | 417, 809, 924, 1091, 1557, 1734, 1991 |
| CaiI | CAGNNNCTG | 1 cut(s) | 262 |
| CciI | TCATGA | 1 cut(s) | 2103 |
| CfoI | GCGC | 8 cut(s) | 121, 1068, 1202, 1241, 1468, 1623, 1784, 1900 |
| Cfr13I | GGNCC | 5 cut(s) | 205, 355, 581, 1044, 1371 |
| CseI | GACGC | 2 cut(s) | 1285, 1342 |
| CsiI | ACCWGGT | 1 cut(s) | 1536 |
| Csp6I | GTAC | 5 cut(s) | 653, 725, 913, 1414, 1958 |
| CviAII | CATG | 9 cut(s) | 287, 373, 409, 529, 773, 875, 1753, 2104, 2179 |
| CviQI | GTAC | 5 cut(s) | 653, 725, 913, 1414, 1958 |
| DdeI | CTNAG | 5 cut(s) | 194, 299, 430, 512, 1737 |
| DinI | GGCGCC | 3 cut(s) | 120, 1467, 1783 |
| DpnI | GATC | 7 cut(s) | 231, 615, 1034, 1363, 1496, 2073, 2228 |
| DpnII | GATC | 7 cut(s) | 229, 613, 1032, 1361, 1494, 2071, 2226 |
| DraIII | CACNNNGTG | 2 cut(s) | 1432, 1540 |
| Eam1104I | CTCTTC | 6 cut(s) | 145, 310, 951, 1274, 1871, 1961 |
| EarI | CTCTTC | 6 cut(s) | 145, 310, 951, 1274, 1871, 1961 |
| EciI | GGCGGA | 2 cut(s) | 982, 1169 |
| Ecl136II | GAGCTC | 1 cut(s) | 1893 |
| Eco130I | CCWWGG | 1 cut(s) | 216 |
| Eco147I | AGGCCT | 2 cut(s) | 161, 926 |
| Eco24I | GRGCYC | 4 cut(s) | 203, 1095, 1895, 2343 |
| Eco47I | GGWCC | 4 cut(s) | 205, 355, 581, 1371 |
| Eco53kI | GAGCTC | 1 cut(s) | 1893 |
| Eco57I | CTGAAG | 1 cut(s) | 800 |
| EcoICRI | GAGCTC | 1 cut(s) | 1893 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2438 |
| EcoO109I | RGGNCCY | 2 cut(s) | 355, 1371 |
| EcoRII | CCWGG | 6 cut(s) | 106, 255, 577, 1536, 2057, 2420 |
| EcoT14I | CCWWGG | 1 cut(s) | 216 |
| EcoT38I | GRGCYC | 4 cut(s) | 203, 1095, 1895, 2343 |
| EgeI | GGCGCC | 3 cut(s) | 120, 1467, 1783 |
| EheI | GGCGCC | 3 cut(s) | 120, 1467, 1783 |
| ErhI | CCWWGG | 1 cut(s) | 216 |
| Esp3I | CGTCTC | 2 cut(s) | 637, 2075 |
| FaeI | CATG | 9 cut(s) | 290, 376, 412, 532, 776, 878, 1756, 2107, 2182 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 911, 943 |
| FaqI | GGGAC | 3 cut(s) | 368, 465, 953 |
| FatI | CATG | 9 cut(s) | 286, 372, 408, 528, 772, 874, 1752, 2103, 2178 |
| FauI | CCCGC | 2 cut(s) | 1094, 1205 |
| FbaI | TGATCA | 3 cut(s) | 1494, 2071, 2226 |
| FblI | GTMKAC | 2 cut(s) | 569, 2315 |
| Fnu4HI | GCNGC | 5 cut(s) | 34, 368, 1183, 1258, 1619 |
| FokI | GGATG | 6 cut(s) | 840, 1163, 1721, 1769, 1961, 2186 |
| FriOI | GRGCYC | 4 cut(s) | 203, 1095, 1895, 2343 |
| Fsp4HI | GCNGC | 5 cut(s) | 34, 368, 1183, 1258, 1619 |
| FspBI | CTAG | 1 cut(s) | 78 |
| GlaI | GCGC | 8 cut(s) | 120, 1067, 1201, 1240, 1467, 1622, 1783, 1899 |
| GluI | GCNGC | 5 cut(s) | 34, 368, 1183, 1258, 1619 |
| GsaI | CCCAGC | 1 cut(s) | 509 |
| HaeII | RGCGCY | 5 cut(s) | 122, 1069, 1469, 1785, 1901 |
| HaeIII | GGCC | 5 cut(s) | 161, 215, 926, 1045, 1993 |
| HapII | CCGG | 3 cut(s) | 203, 1146, 1994 |
| HgaI | GACGC | 2 cut(s) | 1285, 1342 |
| HhaI | GCGC | 8 cut(s) | 121, 1068, 1202, 1241, 1468, 1623, 1784, 1900 |
| Hin1I | GRCGYC | 6 cut(s) | 119, 732, 1296, 1353, 1466, 1782 |
| Hin1II | CATG | 9 cut(s) | 290, 376, 412, 532, 776, 878, 1756, 2107, 2182 |
| Hin6I | GCGC | 8 cut(s) | 119, 1066, 1200, 1239, 1466, 1621, 1782, 1898 |
| HinP1I | GCGC | 8 cut(s) | 119, 1066, 1200, 1239, 1466, 1621, 1782, 1898 |
| HindIII | AAGCTT | 1 cut(s) | 1815 |
| HinfI | GANTC | 9 cut(s) | 340, 671, 761, 800, 1405, 2235, 2348, 2417, 2459 |
| HpaII | CCGG | 3 cut(s) | 203, 1146, 1994 |
| Hpy166II | GTNNAC | 8 cut(s) | 292, 379, 570, 913, 1426, 1958, 2316, 2402 |
| Hpy188III | TCNNGA | 7 cut(s) | 1324, 1409, 1679, 2096, 2104, 2127, 2352 |
| Hpy8I | GTNNAC | 8 cut(s) | 292, 379, 570, 913, 1426, 1958, 2316, 2402 |
| Hpy99I | CGWCG | 4 cut(s) | 737, 1001, 1301, 1550 |
| HpyAV | CCTTC | 8 cut(s) | 60, 881, 949, 982, 1928, 1933, 2032, 2251 |
| HpyCH4III | ACNGT | 9 cut(s) | 41, 717, 821, 1021, 1445, 1506, 1962, 2377, 2414 |
| HpyCH4IV | ACGT | 5 cut(s) | 22, 270, 481, 732, 2115 |
| HpyCH4V | TGCA | 7 cut(s) | 56, 536, 1257, 1509, 1532, 1873, 1989 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1191, 1293, 1729 |
| HpyF3I | CTNAG | 5 cut(s) | 194, 299, 430, 512, 1737 |
| HpySE526I | ACGT | 5 cut(s) | 22, 270, 481, 732, 2115 |
| Hsp92I | GRCGYC | 6 cut(s) | 119, 732, 1296, 1353, 1466, 1782 |
| Hsp92II | CATG | 9 cut(s) | 290, 376, 412, 532, 776, 878, 1756, 2107, 2182 |
| HspAI | GCGC | 8 cut(s) | 119, 1066, 1200, 1239, 1466, 1621, 1782, 1898 |
| KasI | GGCGCC | 3 cut(s) | 118, 1465, 1781 |
| KflI | GGGWCCC | 1 cut(s) | 355 |
| Ksp22I | TGATCA | 3 cut(s) | 1494, 2071, 2226 |
| Kzo9I | GATC | 7 cut(s) | 229, 613, 1032, 1361, 1494, 2071, 2226 |
| LguI | GCTCTTC | 1 cut(s) | 310 |
| LmnI | GCTCC | 4 cut(s) | 198, 697, 1199, 2425 |
| Lsp1109I | GCAGC | 2 cut(s) | 20, 1269 |
| LweI | GCATC | 5 cut(s) | 579, 643, 648, 1244, 1939 |
| MabI | ACCWGGT | 1 cut(s) | 1536 |
| MaeI | CTAG | 1 cut(s) | 78 |
| MaeII | ACGT | 5 cut(s) | 22, 270, 481, 732, 2115 |
| MaeIII | GTNAC | 6 cut(s) | 266, 815, 1021, 1582, 1684, 1792 |
| MalI | GATC | 7 cut(s) | 231, 615, 1034, 1363, 1496, 2073, 2228 |
| MbiI | CCGCTC | 2 cut(s) | 370, 1194 |
| MboI | GATC | 7 cut(s) | 229, 613, 1032, 1361, 1494, 2071, 2226 |
| MflI | RGATCY | 1 cut(s) | 613 |
| MhlI | GDGCHC | 8 cut(s) | 203, 611, 1095, 1545, 1575, 1895, 2015, 2343 |
| Mly113I | GGCGCC | 3 cut(s) | 119, 1466, 1782 |
| MmeI | TCCRAC | 1 cut(s) | 1254 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2472 |
| MseI | TTAA | 8 cut(s) | 113, 180, 234, 498, 555, 624, 1746, 1851 |
| MslI | CAYNNNNRTG | 1 cut(s) | 789 |
| MspI | CCGG | 3 cut(s) | 203, 1146, 1994 |
| MspR9I | CCNGG | 8 cut(s) | 108, 203, 257, 579, 1146, 1538, 2059, 2422 |
| Mva1269I | GAATGC | 3 cut(s) | 1319, 1384, 2503 |
| MvaI | CCWGG | 6 cut(s) | 108, 257, 579, 1538, 2059, 2422 |
| MvnI | CGCG | 5 cut(s) | 1089, 1200, 1239, 1618, 1623 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1191, 1293, 1729 |
| NarI | GGCGCC | 3 cut(s) | 119, 1466, 1782 |
| NciI | CCSGG | 2 cut(s) | 203, 1146 |
| NdeII | GATC | 7 cut(s) | 229, 613, 1032, 1361, 1494, 2071, 2226 |
| NlaIII | CATG | 9 cut(s) | 290, 376, 412, 532, 776, 878, 1756, 2107, 2182 |
| NlaIV | GGNNCC | 8 cut(s) | 120, 200, 356, 357, 1046, 1467, 1636, 1783 |
| NmeAIII | GCCGAG | 1 cut(s) | 1874 |
| NmuCI | GTSAC | 5 cut(s) | 266, 815, 1021, 1582, 1684 |
| NspI | RCATGY | 1 cut(s) | 290 |
| NspV | TTCGAA | 2 cut(s) | 88, 2289 |
| PagI | TCATGA | 1 cut(s) | 2103 |
| PceI | AGGCCT | 2 cut(s) | 161, 926 |
| PciI | ACATGT | 1 cut(s) | 286 |
| PciSI | GCTCTTC | 1 cut(s) | 310 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2286 |
| PctI | GAATGC | 3 cut(s) | 1319, 1384, 2503 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2472 |
| PfeI | GAWTC | 9 cut(s) | 340, 671, 761, 800, 1405, 2235, 2348, 2417, 2459 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 262 |
| PkrI | GCNGC | 5 cut(s) | 35, 369, 1184, 1259, 1620 |
| PluTI | GGCGCC | 3 cut(s) | 122, 1469, 1785 |
| PpuMI | RGGWCCY | 2 cut(s) | 355, 1371 |
| PscI | ACATGT | 1 cut(s) | 286 |
| Psp124BI | GAGCTC | 1 cut(s) | 1895 |
| Psp5II | RGGWCCY | 2 cut(s) | 355, 1371 |
| Psp6I | CCWGG | 6 cut(s) | 106, 255, 577, 1536, 2057, 2420 |
| PspFI | CCCAGC | 1 cut(s) | 505 |
| PspGI | CCWGG | 6 cut(s) | 106, 255, 577, 1536, 2057, 2420 |
| PspN4I | GGNNCC | 8 cut(s) | 120, 200, 356, 357, 1046, 1467, 1636, 1783 |
| PspPI | GGNCC | 5 cut(s) | 205, 355, 581, 1044, 1371 |
| PspPPI | RGGWCCY | 2 cut(s) | 355, 1371 |
| PstNI | CAGNNNCTG | 1 cut(s) | 262 |
| PsuI | RGATCY | 1 cut(s) | 613 |
| RsaI | GTAC | 5 cut(s) | 654, 726, 914, 1415, 1959 |
| RsaNI | GTAC | 5 cut(s) | 653, 725, 913, 1414, 1958 |
| RseI | CAYNNNNRTG | 1 cut(s) | 789 |
| SacI | GAGCTC | 1 cut(s) | 1895 |
| SapI | GCTCTTC | 1 cut(s) | 310 |
| SaqAI | TTAA | 8 cut(s) | 113, 180, 234, 498, 555, 624, 1746, 1851 |
| SatI | GCNGC | 5 cut(s) | 34, 368, 1183, 1258, 1619 |
| Sau3AI | GATC | 7 cut(s) | 229, 613, 1032, 1361, 1494, 2071, 2226 |
| Sau96I | GGNCC | 5 cut(s) | 205, 355, 581, 1044, 1371 |
| ScrFI | CCNGG | 8 cut(s) | 108, 203, 257, 579, 1146, 1538, 2059, 2422 |
| SduI | GDGCHC | 8 cut(s) | 203, 611, 1095, 1545, 1575, 1895, 2015, 2343 |
| SexAI | ACCWGGT | 1 cut(s) | 1536 |
| SfaNI | GCATC | 5 cut(s) | 579, 643, 648, 1244, 1939 |
| SfcI | CTRYAG | 2 cut(s) | 1444, 2373 |
| SfoI | GGCGCC | 3 cut(s) | 120, 1467, 1783 |
| SfuI | TTCGAA | 2 cut(s) | 88, 2289 |
| SinI | GGWCC | 4 cut(s) | 205, 355, 581, 1371 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 789 |
| SmlI | CTYRAG | 1 cut(s) | 740 |
| SmoI | CTYRAG | 1 cut(s) | 740 |
| SseBI | AGGCCT | 2 cut(s) | 161, 926 |
| SspDI | GGCGCC | 3 cut(s) | 118, 1465, 1781 |
| SspMI | CTAG | 1 cut(s) | 78 |
| SstI | GAGCTC | 1 cut(s) | 1895 |
| StuI | AGGCCT | 2 cut(s) | 161, 926 |
| StyD4I | CCNGG | 8 cut(s) | 106, 201, 255, 577, 1144, 1536, 2057, 2420 |
| StyI | CCWWGG | 1 cut(s) | 216 |
| TaaI | ACNGT | 9 cut(s) | 41, 717, 821, 1021, 1445, 1506, 1962, 2377, 2414 |
| TaiI | ACGT | 5 cut(s) | 25, 273, 484, 735, 2118 |
| TaqI | TCGA | 6 cut(s) | 88, 999, 1101, 1215, 1545, 2289 |
| TatI | WGTACW | 4 cut(s) | 652, 724, 1413, 1957 |
| TauI | GCSGC | 3 cut(s) | 370, 1185, 1621 |
| TfiI | GAWTC | 9 cut(s) | 340, 671, 761, 800, 1405, 2235, 2348, 2417, 2459 |
| Tru1I | TTAA | 8 cut(s) | 113, 180, 234, 498, 555, 624, 1746, 1851 |
| Tru9I | TTAA | 8 cut(s) | 113, 180, 234, 498, 555, 624, 1746, 1851 |
| TscAI | CASTG | 4 cut(s) | 35, 591, 1509, 2419 |
| TseFI | GTSAC | 5 cut(s) | 266, 815, 1021, 1582, 1684 |
| TseI | GCWGC | 2 cut(s) | 33, 1257 |
| Tsp45I | GTSAC | 5 cut(s) | 266, 815, 1021, 1582, 1684 |
| TspDTI | ATGAA | 5 cut(s) | 517, 540, 807, 863, 1261 |
| TspGWI | ACGGA | 4 cut(s) | 606, 714, 875, 1354 |
| TspRI | CASTG | 4 cut(s) | 35, 591, 1509, 2419 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 262 |
| VpaK11BI | GGWCC | 4 cut(s) | 205, 355, 581, 1371 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2438 |
| XapI | RAATTY | 5 cut(s) | 870, 881, 897, 1346, 2203 |
| XceI | RCATGY | 1 cut(s) | 290 |
| XmiI | GTMKAC | 2 cut(s) | 569, 2315 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2472 |
| XspI | CTAG | 1 cut(s) | 78 |
| ZraI | GACGTC | 1 cut(s) | 733 |