ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 367 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 64 |
| AccII | CGCG | 1 cut(s) | 1276 |
| AciI | CCGC | 1 cut(s) | 416 |
| AclI | AACGTT | 1 cut(s) | 752 |
| AclWI | GGATC | 2 cut(s) | 49, 353 |
| AcsI | RAATTY | 1 cut(s) | 35 |
| AcyI | GRCGYC | 1 cut(s) | 736 |
| AfaI | GTAC | 4 cut(s) | 708, 720, 812, 983 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 64, 270, 409, 410, 660, 1166 |
| AgsI | TTSAA | 5 cut(s) | 304, 388, 850, 1177, 1250 |
| AjiI | CACGTC | 1 cut(s) | 799 |
| AjnI | CCWGG | 1 cut(s) | 904 |
| AluBI | AGCT | 8 cut(s) | 79, 487, 657, 691, 767, 776, 790, 976 |
| AluI | AGCT | 8 cut(s) | 79, 487, 657, 691, 767, 776, 790, 976 |
| Alw21I | GWGCWC | 1 cut(s) | 88 |
| Alw26I | GTCTC | 1 cut(s) | 446 |
| Alw44I | GTGCAC | 1 cut(s) | 84 |
| AlwI | GGATC | 2 cut(s) | 49, 353 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1211 |
| Ama87I | CYCGRG | 2 cut(s) | 762, 893 |
| AoxI | GGCC | 3 cut(s) | 138, 176, 993 |
| ApaLI | GTGCAC | 1 cut(s) | 84 |
| ApeKI | GCWGC | 1 cut(s) | 767 |
| ApoI | RAATTY | 1 cut(s) | 35 |
| AseI | ATTAAT | 1 cut(s) | 1182 |
| AspLEI | GCGC | 1 cut(s) | 1276 |
| AspS9I | GGNCC | 2 cut(s) | 784, 994 |
| AsuHPI | GGTGA | 2 cut(s) | 980, 1015 |
| AvaI | CYCGRG | 2 cut(s) | 762, 893 |
| AvaII | GGWCC | 1 cut(s) | 784 |
| BaeGI | GKGCMC | 1 cut(s) | 88 |
| BanI | GGYRCC | 1 cut(s) | 367 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 822, 854, 965, 997 |
| BauI | CACGAG | 1 cut(s) | 615 |
| Bbv12I | GWGCWC | 1 cut(s) | 88 |
| BbvI | GCAGC | 1 cut(s) | 754 |
| BccI | CCATC | 6 cut(s) | 7, 153, 407, 985, 1006, 1184 |
| BceAI | ACGGC | 1 cut(s) | 153 |
| BciT130I | CCWGG | 1 cut(s) | 906 |
| BcoDI | GTCTC | 1 cut(s) | 446 |
| BfaI | CTAG | 1 cut(s) | 773 |
| BfmI | CTRYAG | 1 cut(s) | 172 |
| BglII | AGATCT | 1 cut(s) | 436 |
| BisI | GCNGC | 1 cut(s) | 768 |
| BlpI | GCTNAGC | 1 cut(s) | 150 |
| BlsI | GCNGC | 1 cut(s) | 769 |
| BmcAI | AGTACT | 1 cut(s) | 983 |
| Bme1390I | CCNGG | 1 cut(s) | 906 |
| Bme18I | GGWCC | 1 cut(s) | 784 |
| BmeT110I | CYCGRG | 2 cut(s) | 762, 893 |
| BmgBI | CACGTC | 1 cut(s) | 799 |
| BmgT120I | GGNCC | 2 cut(s) | 784, 994 |
| BmiI | GGNNCC | 3 cut(s) | 369, 652, 785 |
| BmrFI | CCNGG | 1 cut(s) | 906 |
| BmrI | ACTGGG | 1 cut(s) | 465 |
| BmsI | GCATC | 4 cut(s) | 13, 850, 870, 946 |
| BmuI | ACTGGG | 1 cut(s) | 465 |
| BpmI | CTGGAG | 2 cut(s) | 637, 998 |
| Bpu10I | CCTNAGC | 2 cut(s) | 106, 195 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 150 |
| BpuEI | CTTGAG | 1 cut(s) | 886 |
| BsaAI | YACGTR | 1 cut(s) | 722 |
| BsaHI | GRCGYC | 1 cut(s) | 736 |
| BsaJI | CCNNGG | 1 cut(s) | 362 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 574, 604 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 64, 270, 409, 410, 660, 1166 |
| Bse1I | ACTGG | 2 cut(s) | 460, 1216 |
| Bse3DI | GCAATG | 1 cut(s) | 337 |
| BseBI | CCWGG | 1 cut(s) | 906 |
| BseDI | CCNNGG | 1 cut(s) | 362 |
| BseGI | GGATG | 4 cut(s) | 164, 399, 885, 1017 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 64, 270, 409, 410, 660, 1166 |
| BseMI | GCAATG | 1 cut(s) | 337 |
| BseMII | CTCAG | 2 cut(s) | 209, 521 |
| BseNI | ACTGG | 2 cut(s) | 460, 1216 |
| BseRI | GAGGAG | 3 cut(s) | 59, 289, 464 |
| BseSI | GKGCMC | 1 cut(s) | 88 |
| BseXI | GCAGC | 1 cut(s) | 754 |
| Bsh1236I | CGCG | 1 cut(s) | 1276 |
| BshFI | GGCC | 3 cut(s) | 140, 178, 995 |
| BshNI | GGYRCC | 1 cut(s) | 367 |
| BsiHKAI | GWGCWC | 1 cut(s) | 88 |
| BsiHKCI | CYCGRG | 2 cut(s) | 762, 893 |
| BsiSI | CCGG | 1 cut(s) | 179 |
| BslFI | GGGAC | 2 cut(s) | 86, 131 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 64, 270, 409, 410, 660, 1166 |
| BsmAI | GTCTC | 1 cut(s) | 446 |
| BsmFI | GGGAC | 2 cut(s) | 86, 131 |
| BsnI | GGCC | 3 cut(s) | 140, 178, 995 |
| BsoBI | CYCGRG | 2 cut(s) | 762, 893 |
| Bsp1286I | GDGCHC | 1 cut(s) | 88 |
| Bsp143I | GATC | 5 cut(s) | 54, 358, 436, 667, 1136 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 150 |
| Bsp19I | CCATGG | 1 cut(s) | 362 |
| BspACI | CCGC | 1 cut(s) | 416 |
| BspANI | GGCC | 3 cut(s) | 140, 178, 995 |
| BspCNI | CTCAG | 2 cut(s) | 208, 522 |
| BspFNI | CGCG | 1 cut(s) | 1276 |
| BspLI | GGNNCC | 3 cut(s) | 369, 652, 785 |
| BspMAI | CTGCAG | 1 cut(s) | 176 |
| BspPI | GGATC | 2 cut(s) | 49, 353 |
| BspT107I | GGYRCC | 1 cut(s) | 367 |
| BsrDI | GCAATG | 1 cut(s) | 337 |
| BsrI | ACTGG | 2 cut(s) | 460, 1216 |
| BssECI | CCNNGG | 1 cut(s) | 362 |
| BssMI | GATC | 5 cut(s) | 54, 358, 436, 667, 1136 |
| BssNI | GRCGYC | 1 cut(s) | 736 |
| BssSI | CACGAG | 1 cut(s) | 615 |
| BssT1I | CCWWGG | 1 cut(s) | 362 |
| Bst2BI | CACGAG | 1 cut(s) | 615 |
| Bst2UI | CCWGG | 1 cut(s) | 906 |
| Bst4CI | ACNGT | 4 cut(s) | 815, 857, 925, 1296 |
| BstACI | GRCGYC | 1 cut(s) | 736 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 671, 889 |
| BstBAI | YACGTR | 1 cut(s) | 722 |
| BstC8I | GCNNGC | 6 cut(s) | 147, 176, 192, 240, 729, 1068 |
| BstDEI | CTNAG | 9 cut(s) | 106, 150, 195, 530, 536, 714, 777, 793, 1077 |
| BstDSI | CCRYGG | 1 cut(s) | 362 |
| BstF5I | GGATG | 4 cut(s) | 164, 399, 885, 1017 |
| BstFNI | CGCG | 1 cut(s) | 1276 |
| BstHHI | GCGC | 1 cut(s) | 1276 |
| BstKTI | GATC | 5 cut(s) | 57, 361, 439, 670, 1139 |
| BstMAI | GTCTC | 1 cut(s) | 446 |
| BstMBI | GATC | 5 cut(s) | 54, 358, 436, 667, 1136 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 146, 151, 562, 671, 733, 773, 889, 1271 |
| BstNI | CCWGG | 1 cut(s) | 906 |
| BstNSI | RCATGY | 5 cut(s) | 124, 242, 731, 1066, 1070 |
| BstSCI | CCNGG | 1 cut(s) | 904 |
| BstSFI | CTRYAG | 1 cut(s) | 172 |
| BstSLI | GKGCMC | 1 cut(s) | 88 |
| BstSNI | TACGTA | 1 cut(s) | 722 |
| BstUI | CGCG | 1 cut(s) | 1276 |
| BstV1I | GCAGC | 1 cut(s) | 754 |
| BstX2I | RGATCY | 2 cut(s) | 54, 436 |
| BstYI | RGATCY | 2 cut(s) | 54, 436 |
| BsuRI | GGCC | 3 cut(s) | 140, 178, 995 |
| BtgI | CCRYGG | 1 cut(s) | 362 |
| BtrI | CACGTC | 1 cut(s) | 799 |
| BtsCI | GGATG | 4 cut(s) | 164, 399, 885, 1017 |
| Cac8I | GCNNGC | 6 cut(s) | 147, 176, 192, 240, 729, 1068 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1211 |
| CfoI | GCGC | 1 cut(s) | 1276 |
| Cfr13I | GGNCC | 2 cut(s) | 784, 994 |
| CseI | GACGC | 2 cut(s) | 249, 725 |
| CsiI | ACCWGGT | 1 cut(s) | 904 |
| Csp6I | GTAC | 4 cut(s) | 707, 719, 811, 982 |
| CviQI | GTAC | 4 cut(s) | 707, 719, 811, 982 |
| DdeI | CTNAG | 9 cut(s) | 106, 150, 195, 530, 536, 714, 777, 793, 1077 |
| DpnI | GATC | 5 cut(s) | 56, 360, 438, 669, 1138 |
| DpnII | GATC | 5 cut(s) | 54, 358, 436, 667, 1136 |
| Eco105I | TACGTA | 1 cut(s) | 722 |
| Eco130I | CCWWGG | 1 cut(s) | 362 |
| Eco32I | GATATC | 1 cut(s) | 605 |
| Eco47I | GGWCC | 1 cut(s) | 784 |
| Eco88I | CYCGRG | 2 cut(s) | 762, 893 |
| EcoRII | CCWGG | 1 cut(s) | 904 |
| EcoRV | GATATC | 1 cut(s) | 605 |
| EcoT14I | CCWWGG | 1 cut(s) | 362 |
| EcoT22I | ATGCAT | 7 cut(s) | 6, 240, 729, 733, 885, 1068, 1072 |
| ErhI | CCWWGG | 1 cut(s) | 362 |
| FaqI | GGGAC | 2 cut(s) | 86, 131 |
| Fnu4HI | GCNGC | 1 cut(s) | 768 |
| FokI | GGATG | 4 cut(s) | 171, 386, 892, 1024 |
| Fsp4HI | GCNGC | 1 cut(s) | 768 |
| FspBI | CTAG | 1 cut(s) | 773 |
| GlaI | GCGC | 1 cut(s) | 1275 |
| GluI | GCNGC | 1 cut(s) | 768 |
| GsuI | CTGGAG | 2 cut(s) | 637, 998 |
| HaeIII | GGCC | 3 cut(s) | 140, 178, 995 |
| HapII | CCGG | 1 cut(s) | 179 |
| HgaI | GACGC | 2 cut(s) | 249, 725 |
| HhaI | GCGC | 1 cut(s) | 1276 |
| Hin1I | GRCGYC | 1 cut(s) | 736 |
| Hin6I | GCGC | 1 cut(s) | 1274 |
| HinP1I | GCGC | 1 cut(s) | 1274 |
| HincII | GTYRAC | 1 cut(s) | 703 |
| HindII | GTYRAC | 1 cut(s) | 703 |
| HindIII | AAGCTT | 1 cut(s) | 77 |
| HinfI | GANTC | 2 cut(s) | 182, 532 |
| HpaI | GTTAAC | 1 cut(s) | 703 |
| HpaII | CCGG | 1 cut(s) | 179 |
| HphI | GGTGA | 2 cut(s) | 980, 1015 |
| Hpy166II | GTNNAC | 5 cut(s) | 86, 703, 811, 1152, 1160 |
| Hpy188I | TCNGA | 3 cut(s) | 531, 1089, 1241 |
| Hpy188III | TCNNGA | 3 cut(s) | 877, 929, 988 |
| Hpy8I | GTNNAC | 5 cut(s) | 86, 703, 811, 1152, 1160 |
| HpyAV | CCTTC | 5 cut(s) | 88, 92, 1120, 1164, 1244 |
| HpyCH4III | ACNGT | 4 cut(s) | 815, 857, 925, 1296 |
| HpyCH4IV | ACGT | 7 cut(s) | 211, 705, 721, 752, 798, 933, 1114 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 146, 151, 562, 671, 733, 773, 889, 1271 |
| HpyF3I | CTNAG | 9 cut(s) | 106, 150, 195, 530, 536, 714, 777, 793, 1077 |
| HpySE526I | ACGT | 7 cut(s) | 211, 705, 721, 752, 798, 933, 1114 |
| Hsp92I | GRCGYC | 1 cut(s) | 736 |
| HspAI | GCGC | 1 cut(s) | 1274 |
| KspAI | GTTAAC | 1 cut(s) | 703 |
| Kzo9I | GATC | 5 cut(s) | 54, 358, 436, 667, 1136 |
| LmnI | GCTCC | 2 cut(s) | 656, 1015 |
| Lsp1109I | GCAGC | 1 cut(s) | 754 |
| LweI | GCATC | 4 cut(s) | 13, 850, 870, 946 |
| MabI | ACCWGGT | 1 cut(s) | 904 |
| MaeI | CTAG | 1 cut(s) | 773 |
| MaeII | ACGT | 7 cut(s) | 211, 705, 721, 752, 798, 933, 1114 |
| MaeIII | GTNAC | 3 cut(s) | 619, 753, 897 |
| MalI | GATC | 5 cut(s) | 56, 360, 438, 669, 1138 |
| MboI | GATC | 5 cut(s) | 54, 358, 436, 667, 1136 |
| MboII | GAAGA | 2 cut(s) | 64, 842 |
| MflI | RGATCY | 2 cut(s) | 54, 436 |
| MhlI | GDGCHC | 1 cut(s) | 88 |
| MluCI | AATT | 3 cut(s) | 35, 1103, 1179 |
| MlyI | GAGTC | 1 cut(s) | 541 |
| MmeI | TCCRAC | 1 cut(s) | 1074 |
| Mph1103I | ATGCAT | 7 cut(s) | 6, 240, 729, 733, 885, 1068, 1072 |
| MseI | TTAA | 6 cut(s) | 132, 204, 510, 702, 963, 1182 |
| MslI | CAYNNNNRTG | 3 cut(s) | 255, 404, 1061 |
| MspI | CCGG | 1 cut(s) | 179 |
| MspR9I | CCNGG | 1 cut(s) | 906 |
| MvaI | CCWGG | 1 cut(s) | 906 |
| MvnI | CGCG | 1 cut(s) | 1276 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 146, 151, 562, 671, 733, 773, 889, 1271 |
| NcoI | CCATGG | 1 cut(s) | 362 |
| NdeII | GATC | 5 cut(s) | 54, 358, 436, 667, 1136 |
| NlaIV | GGNNCC | 3 cut(s) | 369, 652, 785 |
| NsiI | ATGCAT | 7 cut(s) | 6, 240, 729, 733, 885, 1068, 1072 |
| NspI | RCATGY | 5 cut(s) | 124, 242, 731, 1066, 1070 |
| PaeI | GCATGC | 3 cut(s) | 242, 731, 1070 |
| PaeR7I | CTCGAG | 2 cut(s) | 762, 893 |
| PfeI | GAWTC | 1 cut(s) | 182 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 64 |
| PkrI | GCNGC | 1 cut(s) | 769 |
| PleI | GAGTC | 1 cut(s) | 540 |
| PpsI | GAGTC | 1 cut(s) | 540 |
| Ppu21I | YACGTR | 1 cut(s) | 722 |
| PshBI | ATTAAT | 1 cut(s) | 1182 |
| Psp1406I | AACGTT | 1 cut(s) | 752 |
| Psp6I | CCWGG | 1 cut(s) | 904 |
| PspGI | CCWGG | 1 cut(s) | 904 |
| PspN4I | GGNNCC | 3 cut(s) | 369, 652, 785 |
| PspPI | GGNCC | 2 cut(s) | 784, 994 |
| PspXI | VCTCGAGB | 2 cut(s) | 762, 893 |
| PstI | CTGCAG | 1 cut(s) | 176 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1211 |
| PsuI | RGATCY | 2 cut(s) | 54, 436 |
| RsaI | GTAC | 4 cut(s) | 708, 720, 812, 983 |
| RsaNI | GTAC | 4 cut(s) | 707, 719, 811, 982 |
| RseI | CAYNNNNRTG | 3 cut(s) | 255, 404, 1061 |
| SaqAI | TTAA | 6 cut(s) | 132, 204, 510, 702, 963, 1182 |
| SatI | GCNGC | 1 cut(s) | 768 |
| Sau3AI | GATC | 5 cut(s) | 54, 358, 436, 667, 1136 |
| Sau96I | GGNCC | 2 cut(s) | 784, 994 |
| ScaI | AGTACT | 1 cut(s) | 983 |
| SchI | GAGTC | 1 cut(s) | 541 |
| ScrFI | CCNGG | 1 cut(s) | 906 |
| SduI | GDGCHC | 1 cut(s) | 88 |
| SexAI | ACCWGGT | 1 cut(s) | 904 |
| SfaNI | GCATC | 4 cut(s) | 13, 850, 870, 946 |
| SfcI | CTRYAG | 1 cut(s) | 172 |
| Sfr274I | CTCGAG | 2 cut(s) | 762, 893 |
| SinI | GGWCC | 1 cut(s) | 784 |
| SlaI | CTCGAG | 2 cut(s) | 762, 893 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 255, 404, 1061 |
| SmlI | CTYRAG | 3 cut(s) | 762, 865, 893 |
| SmoI | CTYRAG | 3 cut(s) | 762, 865, 893 |
| SnaBI | TACGTA | 1 cut(s) | 722 |
| SphI | GCATGC | 3 cut(s) | 242, 731, 1070 |
| Sse9I | AATT | 3 cut(s) | 35, 1103, 1179 |
| SsiI | CCGC | 1 cut(s) | 416 |
| SspI | AATATT | 1 cut(s) | 514 |
| SspMI | CTAG | 1 cut(s) | 773 |
| StyD4I | CCNGG | 1 cut(s) | 904 |
| StyI | CCWWGG | 1 cut(s) | 362 |
| TaaI | ACNGT | 4 cut(s) | 815, 857, 925, 1296 |
| TaiI | ACGT | 7 cut(s) | 214, 708, 724, 755, 801, 936, 1117 |
| TaqI | TCGA | 4 cut(s) | 7, 347, 763, 894 |
| TasI | AATT | 3 cut(s) | 35, 1103, 1179 |
| TatI | WGTACW | 2 cut(s) | 810, 981 |
| TfiI | GAWTC | 1 cut(s) | 182 |
| Tru1I | TTAA | 6 cut(s) | 132, 204, 510, 702, 963, 1182 |
| Tru9I | TTAA | 6 cut(s) | 132, 204, 510, 702, 963, 1182 |
| TseI | GCWGC | 1 cut(s) | 767 |
| TspDTI | ATGAA | 3 cut(s) | 223, 299, 533 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 64 |
| VneI | GTGCAC | 1 cut(s) | 84 |
| VpaK11BI | GGWCC | 1 cut(s) | 784 |
| VspI | ATTAAT | 1 cut(s) | 1182 |
| XapI | RAATTY | 1 cut(s) | 35 |
| XceI | RCATGY | 5 cut(s) | 124, 242, 731, 1066, 1070 |
| XhoI | CTCGAG | 2 cut(s) | 762, 893 |
| XspI | CTAG | 1 cut(s) | 773 |
| ZrmI | AGTACT | 1 cut(s) | 983 |
| Zsp2I | ATGCAT | 7 cut(s) | 6, 240, 729, 733, 885, 1068, 1072 |