ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 41 - 162 | 8.4e-26 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 269 |
| AccII | CGCG | 1 cut(s) | 203 |
| AciI | CCGC | 4 cut(s) | 105, 203, 269, 302 |
| AclWI | GGATC | 1 cut(s) | 206 |
| AcoI | YGGCCR | 1 cut(s) | 204 |
| AcsI | RAATTY | 3 cut(s) | 384, 432, 619 |
| AcuI | CTGAAG | 1 cut(s) | 134 |
| AfaI | GTAC | 1 cut(s) | 407 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 104, 247, 298, 654 |
| AgsI | TTSAA | 1 cut(s) | 8 |
| AluBI | AGCT | 3 cut(s) | 56, 584, 672 |
| AluI | AGCT | 3 cut(s) | 56, 584, 672 |
| Alw26I | GTCTC | 1 cut(s) | 518 |
| AlwI | GGATC | 1 cut(s) | 206 |
| Ama87I | CYCGRG | 1 cut(s) | 585 |
| AoxI | GGCC | 2 cut(s) | 74, 204 |
| ApeKI | GCWGC | 1 cut(s) | 341 |
| ApoI | RAATTY | 3 cut(s) | 384, 432, 619 |
| AseI | ATTAAT | 2 cut(s) | 126, 639 |
| AspLEI | GCGC | 1 cut(s) | 346 |
| AsuC2I | CCSGG | 2 cut(s) | 449, 649 |
| AsuHPI | GGTGA | 1 cut(s) | 281 |
| AvaI | CYCGRG | 1 cut(s) | 585 |
| BbsI | GAAGAC | 1 cut(s) | 266 |
| BbvI | GCAGC | 1 cut(s) | 328 |
| BccI | CCATC | 1 cut(s) | 143 |
| BcnI | CCSGG | 2 cut(s) | 449, 649 |
| BcoDI | GTCTC | 1 cut(s) | 518 |
| BfaI | CTAG | 4 cut(s) | 102, 213, 489, 673 |
| BfmI | CTRYAG | 1 cut(s) | 579 |
| BisI | GCNGC | 3 cut(s) | 106, 204, 342 |
| BlsI | GCNGC | 3 cut(s) | 107, 205, 343 |
| BmcAI | AGTACT | 1 cut(s) | 407 |
| Bme1390I | CCNGG | 2 cut(s) | 449, 649 |
| BmeT110I | CYCGRG | 1 cut(s) | 585 |
| BmiI | GGNNCC | 1 cut(s) | 646 |
| BmrFI | CCNGG | 2 cut(s) | 449, 649 |
| BmsI | GCATC | 1 cut(s) | 603 |
| BpiI | GAAGAC | 1 cut(s) | 266 |
| BpuMI | CCSGG | 2 cut(s) | 449, 649 |
| BsaJI | CCNNGG | 2 cut(s) | 207, 292 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 104, 247, 298, 654 |
| BseDI | CCNNGG | 2 cut(s) | 207, 292 |
| BseGI | GGATG | 1 cut(s) | 550 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 104, 247, 298, 654 |
| BseMII | CTCAG | 1 cut(s) | 249 |
| BseRI | GAGGAG | 3 cut(s) | 44, 371, 374 |
| BseXI | GCAGC | 1 cut(s) | 328 |
| BseYI | CCCAGC | 1 cut(s) | 668 |
| Bsh1236I | CGCG | 1 cut(s) | 203 |
| BshFI | GGCC | 2 cut(s) | 76, 206 |
| BsiHKCI | CYCGRG | 1 cut(s) | 585 |
| BsiSI | CCGG | 2 cut(s) | 448, 648 |
| BslFI | GGGAC | 1 cut(s) | 589 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 104, 247, 298, 654 |
| BsmAI | GTCTC | 1 cut(s) | 518 |
| BsmFI | GGGAC | 1 cut(s) | 589 |
| BsnI | GGCC | 2 cut(s) | 76, 206 |
| BsoBI | CYCGRG | 1 cut(s) | 585 |
| Bsp143I | GATC | 4 cut(s) | 117, 181, 198, 422 |
| Bsp19I | CCATGG | 1 cut(s) | 207 |
| BspACI | CCGC | 4 cut(s) | 105, 203, 269, 302 |
| BspANI | GGCC | 2 cut(s) | 76, 206 |
| BspCNI | CTCAG | 1 cut(s) | 248 |
| BspFNI | CGCG | 1 cut(s) | 203 |
| BspHI | TCATGA | 1 cut(s) | 184 |
| BspLI | GGNNCC | 1 cut(s) | 646 |
| BspPI | GGATC | 1 cut(s) | 206 |
| BsrBI | CCGCTC | 1 cut(s) | 269 |
| BssECI | CCNNGG | 2 cut(s) | 207, 292 |
| BssMI | GATC | 4 cut(s) | 117, 181, 198, 422 |
| BssT1I | CCWWGG | 2 cut(s) | 207, 292 |
| Bst4CI | ACNGT | 2 cut(s) | 24, 572 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 485 |
| BstDEI | CTNAG | 3 cut(s) | 84, 235, 242 |
| BstDSI | CCRYGG | 1 cut(s) | 207 |
| BstF5I | GGATG | 1 cut(s) | 550 |
| BstFNI | CGCG | 1 cut(s) | 203 |
| BstHHI | GCGC | 1 cut(s) | 346 |
| BstKTI | GATC | 4 cut(s) | 120, 184, 201, 425 |
| BstMAI | GTCTC | 1 cut(s) | 518 |
| BstMBI | GATC | 4 cut(s) | 117, 181, 198, 422 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 209, 236, 266, 485 |
| BstNSI | RCATGY | 1 cut(s) | 230 |
| BstSCI | CCNGG | 2 cut(s) | 447, 647 |
| BstSFI | CTRYAG | 1 cut(s) | 579 |
| BstUI | CGCG | 1 cut(s) | 203 |
| BstV1I | GCAGC | 1 cut(s) | 328 |
| BstV2I | GAAGAC | 1 cut(s) | 266 |
| BsuRI | GGCC | 2 cut(s) | 76, 206 |
| BtgI | CCRYGG | 1 cut(s) | 207 |
| BtsCI | GGATG | 1 cut(s) | 550 |
| BtsIMutI | CAGTG | 1 cut(s) | 568 |
| CciI | TCATGA | 1 cut(s) | 184 |
| CfoI | GCGC | 1 cut(s) | 346 |
| Csp6I | GTAC | 1 cut(s) | 406 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 319, 354 |
| CviAII | CATG | 3 cut(s) | 185, 208, 227 |
| CviJI | RGCY | 9 cut(s) | 56, 76, 134, 206, 212, 239, 584, 664, 672 |
| CviKI_1 | RGCY | 9 cut(s) | 56, 76, 134, 206, 212, 239, 584, 664, 672 |
| CviQI | GTAC | 1 cut(s) | 406 |
| DdeI | CTNAG | 3 cut(s) | 84, 235, 242 |
| DpnI | GATC | 4 cut(s) | 119, 183, 200, 424 |
| DpnII | GATC | 4 cut(s) | 117, 181, 198, 422 |
| EaeI | YGGCCR | 1 cut(s) | 204 |
| EciI | GGCGGA | 1 cut(s) | 317 |
| Eco130I | CCWWGG | 2 cut(s) | 207, 292 |
| Eco147I | AGGCCT | 1 cut(s) | 76 |
| Eco57I | CTGAAG | 1 cut(s) | 134 |
| Eco88I | CYCGRG | 1 cut(s) | 585 |
| EcoRI | GAATTC | 1 cut(s) | 432 |
| EcoT14I | CCWWGG | 2 cut(s) | 207, 292 |
| ErhI | CCWWGG | 2 cut(s) | 207, 292 |
| FaeI | CATG | 3 cut(s) | 188, 211, 230 |
| FaiI | YATR | 7 cut(s) | 186, 209, 228, 248, 308, 441, 602 |
| FaqI | GGGAC | 1 cut(s) | 589 |
| FatI | CATG | 3 cut(s) | 184, 207, 226 |
| FauI | CCCGC | 1 cut(s) | 262 |
| Fnu4HI | GCNGC | 3 cut(s) | 106, 204, 342 |
| FokI | GGATG | 1 cut(s) | 557 |
| Fsp4HI | GCNGC | 3 cut(s) | 106, 204, 342 |
| FspBI | CTAG | 4 cut(s) | 102, 213, 489, 673 |
| GlaI | GCGC | 1 cut(s) | 345 |
| GluI | GCNGC | 3 cut(s) | 106, 204, 342 |
| GsaI | CCCAGC | 1 cut(s) | 672 |
| HaeIII | GGCC | 2 cut(s) | 76, 206 |
| HapII | CCGG | 2 cut(s) | 448, 648 |
| HhaI | GCGC | 1 cut(s) | 346 |
| Hin1II | CATG | 3 cut(s) | 188, 211, 230 |
| Hin6I | GCGC | 1 cut(s) | 344 |
| HinP1I | GCGC | 1 cut(s) | 344 |
| HinfI | GANTC | 4 cut(s) | 4, 323, 364, 526 |
| HpaII | CCGG | 2 cut(s) | 448, 648 |
| HphI | GGTGA | 1 cut(s) | 281 |
| Hpy188I | TCNGA | 4 cut(s) | 39, 179, 336, 373 |
| Hpy188III | TCNNGA | 2 cut(s) | 185, 542 |
| HpyCH4III | ACNGT | 2 cut(s) | 24, 572 |
| HpyCH4V | TGCA | 4 cut(s) | 230, 467, 479, 616 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 209, 236, 266, 485 |
| HpyF3I | CTNAG | 3 cut(s) | 84, 235, 242 |
| Hsp92II | CATG | 3 cut(s) | 188, 211, 230 |
| HspAI | GCGC | 1 cut(s) | 344 |
| Kzo9I | GATC | 4 cut(s) | 117, 181, 198, 422 |
| LpnPI | CCDG | 6 cut(s) | 42, 461, 527, 543, 579, 661 |
| Lsp1109I | GCAGC | 1 cut(s) | 328 |
| LweI | GCATC | 1 cut(s) | 603 |
| MaeI | CTAG | 4 cut(s) | 102, 213, 489, 673 |
| MaeIII | GTNAC | 2 cut(s) | 496, 566 |
| MalI | GATC | 4 cut(s) | 119, 183, 200, 424 |
| MbiI | CCGCTC | 1 cut(s) | 269 |
| MboI | GATC | 4 cut(s) | 117, 181, 198, 422 |
| MboII | GAAGA | 3 cut(s) | 127, 266, 405 |
| MluCI | AATT | 5 cut(s) | 46, 384, 432, 619, 636 |
| MlyI | GAGTC | 1 cut(s) | 520 |
| MseI | TTAA | 6 cut(s) | 45, 80, 126, 348, 630, 639 |
| MspI | CCGG | 2 cut(s) | 448, 648 |
| MspR9I | CCNGG | 2 cut(s) | 449, 649 |
| MvnI | CGCG | 1 cut(s) | 203 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 209, 236, 266, 485 |
| NciI | CCSGG | 2 cut(s) | 449, 649 |
| NcoI | CCATGG | 1 cut(s) | 207 |
| NdeII | GATC | 4 cut(s) | 117, 181, 198, 422 |
| NlaIII | CATG | 3 cut(s) | 188, 211, 230 |
| NlaIV | GGNNCC | 1 cut(s) | 646 |
| NmuCI | GTSAC | 1 cut(s) | 566 |
| NspI | RCATGY | 1 cut(s) | 230 |
| PagI | TCATGA | 1 cut(s) | 184 |
| PceI | AGGCCT | 1 cut(s) | 76 |
| PfeI | GAWTC | 3 cut(s) | 4, 323, 364 |
| PkrI | GCNGC | 3 cut(s) | 107, 205, 343 |
| PleI | GAGTC | 1 cut(s) | 520 |
| PpsI | GAGTC | 1 cut(s) | 520 |
| PshBI | ATTAAT | 2 cut(s) | 126, 639 |
| PspFI | CCCAGC | 1 cut(s) | 668 |
| PspN4I | GGNNCC | 1 cut(s) | 646 |
| RsaI | GTAC | 1 cut(s) | 407 |
| RsaNI | GTAC | 1 cut(s) | 406 |
| SaqAI | TTAA | 6 cut(s) | 45, 80, 126, 348, 630, 639 |
| SatI | GCNGC | 3 cut(s) | 106, 204, 342 |
| Sau3AI | GATC | 4 cut(s) | 117, 181, 198, 422 |
| ScaI | AGTACT | 1 cut(s) | 407 |
| SchI | GAGTC | 1 cut(s) | 520 |
| ScrFI | CCNGG | 2 cut(s) | 449, 649 |
| SfaNI | GCATC | 1 cut(s) | 603 |
| SfcI | CTRYAG | 1 cut(s) | 579 |
| Sse9I | AATT | 5 cut(s) | 46, 384, 432, 619, 636 |
| SseBI | AGGCCT | 1 cut(s) | 76 |
| SsiI | CCGC | 4 cut(s) | 105, 203, 269, 302 |
| SspMI | CTAG | 4 cut(s) | 102, 213, 489, 673 |
| StuI | AGGCCT | 1 cut(s) | 76 |
| StyD4I | CCNGG | 2 cut(s) | 447, 647 |
| StyI | CCWWGG | 2 cut(s) | 207, 292 |
| TaaI | ACNGT | 2 cut(s) | 24, 572 |
| TaqI | TCGA | 2 cut(s) | 326, 421 |
| TasI | AATT | 5 cut(s) | 46, 384, 432, 619, 636 |
| TatI | WGTACW | 1 cut(s) | 405 |
| TauI | GCSGC | 2 cut(s) | 108, 206 |
| TfiI | GAWTC | 3 cut(s) | 4, 323, 364 |
| Tru1I | TTAA | 6 cut(s) | 45, 80, 126, 348, 630, 639 |
| Tru9I | TTAA | 6 cut(s) | 45, 80, 126, 348, 630, 639 |
| TscAI | CASTG | 1 cut(s) | 575 |
| TseFI | GTSAC | 1 cut(s) | 566 |
| TseI | GCWGC | 1 cut(s) | 341 |
| Tsp45I | GTSAC | 1 cut(s) | 566 |
| TspGWI | ACGGA | 1 cut(s) | 128 |
| TspRI | CASTG | 1 cut(s) | 575 |
| VspI | ATTAAT | 2 cut(s) | 126, 639 |
| XapI | RAATTY | 3 cut(s) | 384, 432, 619 |
| XceI | RCATGY | 1 cut(s) | 230 |
| XspI | CTAG | 4 cut(s) | 102, 213, 489, 673 |
| ZrmI | AGTACT | 1 cut(s) | 407 |