zinc-binding in reverse transcriptase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 37 - 134 | 2.8e-15 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 223 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 358 |
| AciI | CCGC | 1 cut(s) | 53 |
| AcoI | YGGCCR | 1 cut(s) | 321 |
| AcsI | RAATTY | 1 cut(s) | 333 |
| AfaI | GTAC | 2 cut(s) | 162, 187 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 92, 358 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 312 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 135, 167 |
| AluBI | AGCT | 4 cut(s) | 191, 213, 340, 379 |
| AluI | AGCT | 4 cut(s) | 191, 213, 340, 379 |
| Alw26I | GTCTC | 1 cut(s) | 299 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 358 |
| AoxI | GGCC | 2 cut(s) | 120, 321 |
| ApeKI | GCWGC | 2 cut(s) | 55, 191 |
| ApoI | RAATTY | 1 cut(s) | 333 |
| AspS9I | GGNCC | 1 cut(s) | 120 |
| AsuHPI | GGTGA | 1 cut(s) | 82 |
| BbvI | GCAGC | 2 cut(s) | 67, 178 |
| BccI | CCATC | 1 cut(s) | 45 |
| BceAI | ACGGC | 1 cut(s) | 308 |
| BclI | TGATCA | 1 cut(s) | 172 |
| BcoDI | GTCTC | 1 cut(s) | 299 |
| BfaI | CTAG | 1 cut(s) | 317 |
| BfmI | CTRYAG | 1 cut(s) | 272 |
| BfuAI | ACCTGC | 1 cut(s) | 223 |
| BisI | GCNGC | 2 cut(s) | 56, 192 |
| BlpI | GCTNAGC | 1 cut(s) | 201 |
| BlsI | GCNGC | 2 cut(s) | 57, 193 |
| BmcAI | AGTACT | 1 cut(s) | 162 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 312 |
| BmgT120I | GGNCC | 1 cut(s) | 120 |
| BmiI | GGNNCC | 1 cut(s) | 121 |
| BpmI | CTGGAG | 1 cut(s) | 362 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 201 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 92, 358 |
| Bse3DI | GCAATG | 1 cut(s) | 58 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 92, 358 |
| BseMI | GCAATG | 1 cut(s) | 58 |
| BseRI | GAGGAG | 1 cut(s) | 75 |
| BseXI | GCAGC | 2 cut(s) | 67, 178 |
| BshFI | GGCC | 2 cut(s) | 122, 323 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 92, 358 |
| BsmAI | GTCTC | 1 cut(s) | 299 |
| BsnI | GGCC | 2 cut(s) | 122, 323 |
| Bsp1407I | TGTACA | 1 cut(s) | 185 |
| Bsp143I | GATC | 2 cut(s) | 172, 387 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 201 |
| BspACI | CCGC | 1 cut(s) | 53 |
| BspANI | GGCC | 2 cut(s) | 122, 323 |
| BspHI | TCATGA | 1 cut(s) | 13 |
| BspLI | GGNNCC | 1 cut(s) | 121 |
| BspMAI | CTGCAG | 1 cut(s) | 276 |
| BspMI | ACCTGC | 1 cut(s) | 223 |
| BsrDI | GCAATG | 1 cut(s) | 58 |
| BsrGI | TGTACA | 1 cut(s) | 185 |
| BssMI | GATC | 2 cut(s) | 172, 387 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 271 |
| BstAUI | TGTACA | 1 cut(s) | 185 |
| BstC8I | GCNNGC | 1 cut(s) | 27 |
| BstDEI | CTNAG | 1 cut(s) | 201 |
| BstKTI | GATC | 2 cut(s) | 175, 390 |
| BstMAI | GTCTC | 1 cut(s) | 299 |
| BstMBI | GATC | 2 cut(s) | 172, 387 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 197, 271, 280 |
| BstNSI | RCATGY | 2 cut(s) | 209, 368 |
| BstSFI | CTRYAG | 1 cut(s) | 272 |
| BstV1I | GCAGC | 2 cut(s) | 67, 178 |
| BsuRI | GGCC | 2 cut(s) | 122, 323 |
| BveI | ACCTGC | 1 cut(s) | 223 |
| Cac8I | GCNNGC | 1 cut(s) | 27 |
| CaiI | CAGNNNCTG | 1 cut(s) | 358 |
| CciI | TCATGA | 1 cut(s) | 13 |
| Cfr13I | GGNCC | 1 cut(s) | 120 |
| Csp6I | GTAC | 2 cut(s) | 161, 186 |
| CviAII | CATG | 4 cut(s) | 6, 14, 206, 365 |
| CviJI | RGCY | 7 cut(s) | 122, 191, 213, 248, 323, 340, 379 |
| CviKI_1 | RGCY | 7 cut(s) | 122, 191, 213, 248, 323, 340, 379 |
| CviQI | GTAC | 2 cut(s) | 161, 186 |
| DdeI | CTNAG | 1 cut(s) | 201 |
| DpnI | GATC | 2 cut(s) | 174, 389 |
| DpnII | GATC | 2 cut(s) | 172, 387 |
| DriI | GACNNNNNGTC | 1 cut(s) | 312 |
| EaeI | YGGCCR | 1 cut(s) | 321 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 312 |
| EcoO109I | RGGNCCY | 1 cut(s) | 120 |
| FaeI | CATG | 4 cut(s) | 9, 17, 209, 368 |
| FaiI | YATR | 6 cut(s) | 7, 15, 207, 216, 366, 410 |
| FatI | CATG | 4 cut(s) | 5, 13, 205, 364 |
| FbaI | TGATCA | 1 cut(s) | 172 |
| Fnu4HI | GCNGC | 2 cut(s) | 56, 192 |
| Fsp4HI | GCNGC | 2 cut(s) | 56, 192 |
| FspBI | CTAG | 1 cut(s) | 317 |
| GluI | GCNGC | 2 cut(s) | 56, 192 |
| GsuI | CTGGAG | 1 cut(s) | 362 |
| HaeIII | GGCC | 2 cut(s) | 122, 323 |
| Hin1II | CATG | 4 cut(s) | 9, 17, 209, 368 |
| HincII | GTYRAC | 1 cut(s) | 115 |
| HindII | GTYRAC | 1 cut(s) | 115 |
| HinfI | GANTC | 1 cut(s) | 355 |
| HphI | GGTGA | 1 cut(s) | 82 |
| Hpy166II | GTNNAC | 1 cut(s) | 115 |
| Hpy188III | TCNNGA | 5 cut(s) | 14, 46, 127, 167, 359 |
| Hpy8I | GTNNAC | 1 cut(s) | 115 |
| HpyAV | CCTTC | 1 cut(s) | 133 |
| HpyCH4V | TGCA | 4 cut(s) | 63, 265, 274, 290 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 197, 271, 280 |
| HpyF3I | CTNAG | 1 cut(s) | 201 |
| Hsp92II | CATG | 4 cut(s) | 9, 17, 209, 368 |
| Ksp22I | TGATCA | 1 cut(s) | 172 |
| Kzo9I | GATC | 2 cut(s) | 172, 387 |
| LmnI | GCTCC | 2 cut(s) | 88, 405 |
| LpnPI | CCDG | 8 cut(s) | 11, 77, 218, 284, 326, 344, 365, 389 |
| Lsp1109I | GCAGC | 2 cut(s) | 67, 178 |
| MaeI | CTAG | 1 cut(s) | 317 |
| MaeIII | GTNAC | 1 cut(s) | 217 |
| MalI | GATC | 2 cut(s) | 174, 389 |
| MboI | GATC | 2 cut(s) | 172, 387 |
| MluCI | AATT | 6 cut(s) | 98, 104, 150, 285, 333, 346 |
| MnlI | CCTC | 3 cut(s) | 66, 96, 140 |
| MseI | TTAA | 4 cut(s) | 101, 107, 242, 418 |
| MspA1I | CMGCKG | 2 cut(s) | 191, 340 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 197, 271, 280 |
| NdeII | GATC | 2 cut(s) | 172, 387 |
| NlaIII | CATG | 4 cut(s) | 9, 17, 209, 368 |
| NlaIV | GGNNCC | 1 cut(s) | 121 |
| NspI | RCATGY | 2 cut(s) | 209, 368 |
| PagI | TCATGA | 1 cut(s) | 13 |
| PfeI | GAWTC | 1 cut(s) | 355 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 358 |
| PkrI | GCNGC | 2 cut(s) | 57, 193 |
| PspN4I | GGNNCC | 1 cut(s) | 121 |
| PspPI | GGNCC | 1 cut(s) | 120 |
| PstI | CTGCAG | 1 cut(s) | 276 |
| PstNI | CAGNNNCTG | 1 cut(s) | 358 |
| PvuII | CAGCTG | 2 cut(s) | 191, 340 |
| RsaI | GTAC | 2 cut(s) | 162, 187 |
| RsaNI | GTAC | 2 cut(s) | 161, 186 |
| SaqAI | TTAA | 4 cut(s) | 101, 107, 242, 418 |
| SatI | GCNGC | 2 cut(s) | 56, 192 |
| Sau3AI | GATC | 2 cut(s) | 172, 387 |
| Sau96I | GGNCC | 1 cut(s) | 120 |
| ScaI | AGTACT | 1 cut(s) | 162 |
| SetI | ASST | 7 cut(s) | 77, 181, 193, 215, 237, 342, 381 |
| SfcI | CTRYAG | 1 cut(s) | 272 |
| Sse9I | AATT | 6 cut(s) | 98, 104, 150, 285, 333, 346 |
| SsiI | CCGC | 1 cut(s) | 53 |
| SspMI | CTAG | 1 cut(s) | 317 |
| TaqI | TCGA | 1 cut(s) | 166 |
| TasI | AATT | 6 cut(s) | 98, 104, 150, 285, 333, 346 |
| TatI | WGTACW | 2 cut(s) | 160, 185 |
| TfiI | GAWTC | 1 cut(s) | 355 |
| Tru1I | TTAA | 4 cut(s) | 101, 107, 242, 418 |
| Tru9I | TTAA | 4 cut(s) | 101, 107, 242, 418 |
| TseI | GCWGC | 2 cut(s) | 55, 191 |
| TspDTI | ATGAA | 1 cut(s) | 345 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 358 |
| XapI | RAATTY | 1 cut(s) | 333 |
| XceI | RCATGY | 2 cut(s) | 209, 368 |
| XspI | CTAG | 1 cut(s) | 317 |
| ZrmI | AGTACT | 1 cut(s) | 162 |