Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 171 |
| Acc65I | GGTACC | 1 cut(s) | 125 |
| AccB1I | GGYRCC | 1 cut(s) | 125 |
| AccII | CGCG | 1 cut(s) | 595 |
| AciI | CCGC | 4 cut(s) | 122, 206, 423, 593 |
| AclWI | GGATC | 1 cut(s) | 471 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AfaI | GTAC | 1 cut(s) | 127 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 205, 422 |
| AflIII | ACRYGT | 1 cut(s) | 178 |
| AgsI | TTSAA | 1 cut(s) | 176 |
| AluBI | AGCT | 4 cut(s) | 146, 450, 471, 506 |
| AluI | AGCT | 4 cut(s) | 146, 450, 471, 506 |
| Alw21I | GWGCWC | 3 cut(s) | 246, 452, 473 |
| Alw26I | GTCTC | 1 cut(s) | 565 |
| AlwI | GGATC | 1 cut(s) | 471 |
| AoxI | GGCC | 1 cut(s) | 608 |
| ApeKI | GCWGC | 1 cut(s) | 203 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 543, 575 |
| AseI | ATTAAT | 1 cut(s) | 372 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 507 |
| Asp718I | GGTACC | 1 cut(s) | 125 |
| AsuHPI | GGTGA | 1 cut(s) | 220 |
| AsuII | TTCGAA | 1 cut(s) | 299 |
| BanI | GGYRCC | 1 cut(s) | 125 |
| BanII | GRGCYC | 2 cut(s) | 452, 473 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 571, 603 |
| Bbv12I | GWGCWC | 3 cut(s) | 246, 452, 473 |
| BbvI | GCAGC | 1 cut(s) | 190 |
| BccI | CCATC | 3 cut(s) | 340, 418, 488 |
| BcoDI | GTCTC | 1 cut(s) | 565 |
| BfaI | CTAG | 1 cut(s) | 616 |
| BfuAI | ACCTGC | 1 cut(s) | 171 |
| BisI | GCNGC | 3 cut(s) | 204, 424, 593 |
| BlsI | GCNGC | 3 cut(s) | 205, 425, 594 |
| BmiI | GGNNCC | 2 cut(s) | 127, 161 |
| BmsI | GCATC | 2 cut(s) | 175, 225 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 242, 274, 391, 423 |
| Bpu14I | TTCGAA | 1 cut(s) | 299 |
| BpuEI | CTTGAG | 1 cut(s) | 436 |
| BsaAI | YACGTR | 1 cut(s) | 44 |
| BsaBI | GATNNNNATC | 1 cut(s) | 551 |
| BsaJI | CCNNGG | 1 cut(s) | 443 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 205, 422 |
| Bse118I | RCCGGY | 1 cut(s) | 238 |
| Bse8I | GATNNNNATC | 1 cut(s) | 551 |
| BseDI | CCNNGG | 1 cut(s) | 443 |
| BseGI | GGATG | 1 cut(s) | 473 |
| BseJI | GATNNNNATC | 1 cut(s) | 551 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 205, 422 |
| BseRI | GAGGAG | 2 cut(s) | 156, 397 |
| BseXI | GCAGC | 1 cut(s) | 190 |
| Bsh1236I | CGCG | 1 cut(s) | 595 |
| Bsh1285I | CGRYCG | 2 cut(s) | 420, 549 |
| BshFI | GGCC | 1 cut(s) | 610 |
| BshNI | GGYRCC | 1 cut(s) | 125 |
| BsiEI | CGRYCG | 2 cut(s) | 420, 549 |
| BsiHKAI | GWGCWC | 3 cut(s) | 246, 452, 473 |
| BsiSI | CCGG | 2 cut(s) | 239, 538 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 205, 422 |
| BsmAI | GTCTC | 1 cut(s) | 565 |
| BsmBI | CGTCTC | 1 cut(s) | 565 |
| BsnI | GGCC | 1 cut(s) | 610 |
| Bsp119I | TTCGAA | 1 cut(s) | 299 |
| Bsp1286I | GDGCHC | 3 cut(s) | 246, 452, 473 |
| Bsp143I | GATC | 4 cut(s) | 417, 463, 546, 602 |
| Bsp19I | CCATGG | 1 cut(s) | 443 |
| BspACI | CCGC | 4 cut(s) | 122, 206, 423, 593 |
| BspANI | GGCC | 1 cut(s) | 610 |
| BspFNI | CGCG | 1 cut(s) | 595 |
| BspLI | GGNNCC | 2 cut(s) | 127, 161 |
| BspMI | ACCTGC | 1 cut(s) | 171 |
| BspPI | GGATC | 1 cut(s) | 471 |
| BspQI | GCTCTTC | 1 cut(s) | 513 |
| BspT104I | TTCGAA | 1 cut(s) | 299 |
| BspT107I | GGYRCC | 1 cut(s) | 125 |
| BsrFI | RCCGGY | 1 cut(s) | 238 |
| BssAI | RCCGGY | 1 cut(s) | 238 |
| BssECI | CCNNGG | 1 cut(s) | 443 |
| BssMI | GATC | 4 cut(s) | 417, 463, 546, 602 |
| BssT1I | CCWWGG | 1 cut(s) | 443 |
| Bst6I | CTCTTC | 1 cut(s) | 513 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 200 |
| BstBAI | YACGTR | 1 cut(s) | 44 |
| BstBI | TTCGAA | 1 cut(s) | 299 |
| BstC8I | GCNNGC | 1 cut(s) | 196 |
| BstDEI | CTNAG | 1 cut(s) | 564 |
| BstDSI | CCRYGG | 1 cut(s) | 443 |
| BstF5I | GGATG | 1 cut(s) | 473 |
| BstFNI | CGCG | 1 cut(s) | 595 |
| BstKTI | GATC | 4 cut(s) | 420, 466, 549, 605 |
| BstMAI | GTCTC | 1 cut(s) | 565 |
| BstMBI | GATC | 4 cut(s) | 417, 463, 546, 602 |
| BstMCI | CGRYCG | 2 cut(s) | 420, 549 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 44, 143, 200, 589 |
| BstNSI | RCATGY | 2 cut(s) | 182, 198 |
| BstUI | CGCG | 1 cut(s) | 595 |
| BstV1I | GCAGC | 1 cut(s) | 190 |
| BsuRI | GGCC | 1 cut(s) | 610 |
| BtgI | CCRYGG | 1 cut(s) | 443 |
| BtgZI | GCGATG | 1 cut(s) | 466 |
| BtsCI | GGATG | 1 cut(s) | 473 |
| BveI | ACCTGC | 1 cut(s) | 171 |
| Cac8I | GCNNGC | 1 cut(s) | 196 |
| Cfr10I | RCCGGY | 1 cut(s) | 238 |
| Csp6I | GTAC | 1 cut(s) | 126 |
| CviAII | CATG | 7 cut(s) | 130, 179, 195, 200, 232, 444, 460 |
| CviJI | RGCY | 6 cut(s) | 146, 434, 450, 471, 506, 610 |
| CviKI_1 | RGCY | 6 cut(s) | 146, 434, 450, 471, 506, 610 |
| CviQI | GTAC | 1 cut(s) | 126 |
| DdeI | CTNAG | 1 cut(s) | 564 |
| DpnI | GATC | 4 cut(s) | 419, 465, 548, 604 |
| DpnII | GATC | 4 cut(s) | 417, 463, 546, 602 |
| Eam1104I | CTCTTC | 1 cut(s) | 513 |
| EarI | CTCTTC | 1 cut(s) | 513 |
| Ecl136II | GAGCTC | 2 cut(s) | 450, 471 |
| Eco130I | CCWWGG | 1 cut(s) | 443 |
| Eco24I | GRGCYC | 2 cut(s) | 452, 473 |
| Eco53kI | GAGCTC | 2 cut(s) | 450, 471 |
| EcoICRI | GAGCTC | 2 cut(s) | 450, 471 |
| EcoT14I | CCWWGG | 1 cut(s) | 443 |
| EcoT22I | ATGCAT | 1 cut(s) | 190 |
| EcoT38I | GRGCYC | 2 cut(s) | 452, 473 |
| ErhI | CCWWGG | 1 cut(s) | 443 |
| Esp3I | CGTCTC | 1 cut(s) | 565 |
| FaeI | CATG | 7 cut(s) | 133, 182, 198, 203, 235, 447, 463 |
| FatI | CATG | 7 cut(s) | 129, 178, 194, 199, 231, 443, 459 |
| FauI | CCCGC | 1 cut(s) | 115 |
| Fnu4HI | GCNGC | 3 cut(s) | 204, 424, 593 |
| FokI | GGATG | 1 cut(s) | 460 |
| FriOI | GRGCYC | 2 cut(s) | 452, 473 |
| Fsp4HI | GCNGC | 3 cut(s) | 204, 424, 593 |
| FspBI | CTAG | 1 cut(s) | 616 |
| GluI | GCNGC | 3 cut(s) | 204, 424, 593 |
| HaeIII | GGCC | 1 cut(s) | 610 |
| HapII | CCGG | 2 cut(s) | 239, 538 |
| Hin1II | CATG | 7 cut(s) | 133, 182, 198, 203, 235, 447, 463 |
| HinfI | GANTC | 3 cut(s) | 257, 400, 519 |
| HpaII | CCGG | 2 cut(s) | 239, 538 |
| HphI | GGTGA | 1 cut(s) | 220 |
| Hpy166II | GTNNAC | 2 cut(s) | 404, 515 |
| Hpy188I | TCNGA | 4 cut(s) | 159, 417, 468, 531 |
| Hpy188III | TCNNGA | 3 cut(s) | 113, 367, 512 |
| Hpy8I | GTNNAC | 2 cut(s) | 404, 515 |
| Hpy99I | CGWCG | 2 cut(s) | 560, 600 |
| HpyAV | CCTTC | 2 cut(s) | 79, 597 |
| HpyCH4IV | ACGT | 2 cut(s) | 43, 363 |
| HpyCH4V | TGCA | 2 cut(s) | 188, 271 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 44, 143, 200, 589 |
| HpyF3I | CTNAG | 1 cut(s) | 564 |
| HpySE526I | ACGT | 2 cut(s) | 43, 363 |
| Hsp92II | CATG | 7 cut(s) | 133, 182, 198, 203, 235, 447, 463 |
| KpnI | GGTACC | 1 cut(s) | 129 |
| Kzo9I | GATC | 4 cut(s) | 417, 463, 546, 602 |
| LguI | GCTCTTC | 1 cut(s) | 513 |
| LmnI | GCTCC | 3 cut(s) | 143, 447, 468 |
| LpnPI | CCDG | 5 cut(s) | 123, 176, 252, 352, 551 |
| Lsp1109I | GCAGC | 1 cut(s) | 190 |
| LweI | GCATC | 2 cut(s) | 175, 225 |
| MaeI | CTAG | 1 cut(s) | 616 |
| MaeII | ACGT | 2 cut(s) | 43, 363 |
| MaeIII | GTNAC | 2 cut(s) | 113, 567 |
| MalI | GATC | 4 cut(s) | 419, 465, 548, 604 |
| MboI | GATC | 4 cut(s) | 417, 463, 546, 602 |
| MboII | GAAGA | 3 cut(s) | 330, 500, 612 |
| MhlI | GDGCHC | 3 cut(s) | 246, 452, 473 |
| MluCI | AATT | 4 cut(s) | 212, 394, 532, 572 |
| MlyI | GAGTC | 3 cut(s) | 251, 409, 528 |
| MnlI | CCTC | 8 cut(s) | 48, 134, 375, 378, 417, 487, 509, 517 |
| Mph1103I | ATGCAT | 1 cut(s) | 190 |
| MroXI | GAANNNNTTC | 1 cut(s) | 507 |
| MseI | TTAA | 1 cut(s) | 372 |
| MslI | CAYNNNNRTG | 2 cut(s) | 183, 193 |
| MspI | CCGG | 2 cut(s) | 239, 538 |
| MvnI | CGCG | 1 cut(s) | 595 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 44, 143, 200, 589 |
| NcoI | CCATGG | 1 cut(s) | 443 |
| NdeII | GATC | 4 cut(s) | 417, 463, 546, 602 |
| NlaIII | CATG | 7 cut(s) | 133, 182, 198, 203, 235, 447, 463 |
| NlaIV | GGNNCC | 2 cut(s) | 127, 161 |
| NmuCI | GTSAC | 2 cut(s) | 113, 567 |
| NsiI | ATGCAT | 1 cut(s) | 190 |
| NspI | RCATGY | 2 cut(s) | 182, 198 |
| NspV | TTCGAA | 1 cut(s) | 299 |
| PaeI | GCATGC | 1 cut(s) | 198 |
| PciI | ACATGT | 1 cut(s) | 178 |
| PciSI | GCTCTTC | 1 cut(s) | 513 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 555 |
| PdmI | GAANNNNTTC | 1 cut(s) | 507 |
| PkrI | GCNGC | 3 cut(s) | 205, 425, 594 |
| Ple19I | CGATCG | 2 cut(s) | 420, 549 |
| PleI | GAGTC | 3 cut(s) | 251, 408, 527 |
| PpsI | GAGTC | 3 cut(s) | 251, 408, 527 |
| Ppu21I | YACGTR | 1 cut(s) | 44 |
| PscI | ACATGT | 1 cut(s) | 178 |
| PshBI | ATTAAT | 1 cut(s) | 372 |
| Psp124BI | GAGCTC | 2 cut(s) | 452, 473 |
| PspN4I | GGNNCC | 2 cut(s) | 127, 161 |
| PvuI | CGATCG | 2 cut(s) | 420, 549 |
| RsaI | GTAC | 1 cut(s) | 127 |
| RsaNI | GTAC | 1 cut(s) | 126 |
| RseI | CAYNNNNRTG | 2 cut(s) | 183, 193 |
| SacI | GAGCTC | 2 cut(s) | 452, 473 |
| SapI | GCTCTTC | 1 cut(s) | 513 |
| SaqAI | TTAA | 1 cut(s) | 372 |
| SatI | GCNGC | 3 cut(s) | 204, 424, 593 |
| Sau3AI | GATC | 4 cut(s) | 417, 463, 546, 602 |
| SchI | GAGTC | 3 cut(s) | 251, 409, 528 |
| SduI | GDGCHC | 3 cut(s) | 246, 452, 473 |
| SfaNI | GCATC | 2 cut(s) | 175, 225 |
| SfuI | TTCGAA | 1 cut(s) | 299 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 183, 193 |
| SmlI | CTYRAG | 1 cut(s) | 451 |
| SmoI | CTYRAG | 1 cut(s) | 451 |
| SphI | GCATGC | 1 cut(s) | 198 |
| Sse9I | AATT | 4 cut(s) | 212, 394, 532, 572 |
| SsiI | CCGC | 4 cut(s) | 122, 206, 423, 593 |
| SspI | AATATT | 1 cut(s) | 17 |
| SspMI | CTAG | 1 cut(s) | 616 |
| SstI | GAGCTC | 2 cut(s) | 452, 473 |
| StyI | CCWWGG | 1 cut(s) | 443 |
| TaiI | ACGT | 2 cut(s) | 46, 366 |
| TaqI | TCGA | 5 cut(s) | 53, 299, 501, 522, 549 |
| TasI | AATT | 4 cut(s) | 212, 394, 532, 572 |
| TauI | GCSGC | 2 cut(s) | 426, 595 |
| Tru1I | TTAA | 1 cut(s) | 372 |
| Tru9I | TTAA | 1 cut(s) | 372 |
| TseFI | GTSAC | 2 cut(s) | 113, 567 |
| TseI | GCWGC | 1 cut(s) | 203 |
| Tsp45I | GTSAC | 2 cut(s) | 113, 567 |
| TspDTI | ATGAA | 2 cut(s) | 65, 448 |
| VspI | ATTAAT | 1 cut(s) | 372 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XceI | RCATGY | 2 cut(s) | 182, 198 |
| XmnI | GAANNNNTTC | 1 cut(s) | 507 |
| XspI | CTAG | 1 cut(s) | 616 |
| Zsp2I | ATGCAT | 1 cut(s) | 190 |