Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 838 |
| AccI | GTMKAC | 2 cut(s) | 617, 940 |
| AccIII | TCCGGA | 1 cut(s) | 398 |
| AciI | CCGC | 2 cut(s) | 346, 389 |
| AclWI | GGATC | 1 cut(s) | 53 |
| AcsI | RAATTY | 1 cut(s) | 1005 |
| AcuI | CTGAAG | 2 cut(s) | 135, 654 |
| AfaI | GTAC | 3 cut(s) | 121, 311, 495 |
| AfeI | AGCGCT | 1 cut(s) | 902 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 352, 710, 805 |
| AflIII | ACRYGT | 1 cut(s) | 122 |
| AgsI | TTSAA | 4 cut(s) | 418, 559, 1112, 1277 |
| AjnI | CCWGG | 2 cut(s) | 259, 596 |
| Alw26I | GTCTC | 1 cut(s) | 789 |
| AlwI | GGATC | 1 cut(s) | 53 |
| Aor13HI | TCCGGA | 1 cut(s) | 398 |
| Aor51HI | AGCGCT | 1 cut(s) | 902 |
| AoxI | GGCC | 4 cut(s) | 200, 432, 486, 536 |
| ApeKI | GCWGC | 4 cut(s) | 131, 227, 641, 1292 |
| ApoI | RAATTY | 1 cut(s) | 1005 |
| AseI | ATTAAT | 1 cut(s) | 579 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 759 |
| AspLEI | GCGC | 1 cut(s) | 903 |
| AspS9I | GGNCC | 4 cut(s) | 51, 263, 433, 850 |
| AsuHPI | GGTGA | 3 cut(s) | 494, 901, 938 |
| AsuII | TTCGAA | 1 cut(s) | 1225 |
| AvaII | GGWCC | 3 cut(s) | 51, 263, 850 |
| AxyI | CCTNAGG | 1 cut(s) | 429 |
| BanI | GGYRCC | 1 cut(s) | 838 |
| BbvCI | CCTCAGC | 1 cut(s) | 317 |
| BbvI | GCAGC | 4 cut(s) | 143, 214, 628, 1279 |
| BccI | CCATC | 5 cut(s) | 510, 616, 917, 1153, 1234 |
| BciT130I | CCWGG | 2 cut(s) | 261, 598 |
| BcoDI | GTCTC | 1 cut(s) | 789 |
| BfaI | CTAG | 3 cut(s) | 281, 591, 959 |
| BfmI | CTRYAG | 1 cut(s) | 1253 |
| BfoI | RGCGCY | 1 cut(s) | 904 |
| BglII | AGATCT | 1 cut(s) | 144 |
| BisI | GCNGC | 4 cut(s) | 132, 228, 642, 1293 |
| BlpI | GCTNAGC | 1 cut(s) | 1200 |
| BlsI | GCNGC | 4 cut(s) | 133, 229, 643, 1294 |
| Bme1390I | CCNGG | 2 cut(s) | 261, 598 |
| Bme18I | GGWCC | 3 cut(s) | 51, 263, 850 |
| BmgT120I | GGNCC | 4 cut(s) | 51, 263, 433, 850 |
| BmiI | GGNNCC | 3 cut(s) | 435, 702, 840 |
| BmrFI | CCNGG | 2 cut(s) | 261, 598 |
| BmsI | GCATC | 2 cut(s) | 118, 331 |
| Bpu10I | CCTNAGC | 1 cut(s) | 317 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1200 |
| Bpu14I | TTCGAA | 1 cut(s) | 1225 |
| BpuEI | CTTGAG | 3 cut(s) | 517, 1079, 1256 |
| BsaI | GGTCTC | 1 cut(s) | 789 |
| BsaJI | CCNNGG | 3 cut(s) | 596, 846, 912 |
| BsaWI | WCCGGW | 1 cut(s) | 398 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 352, 710, 805 |
| Bse118I | RCCGGY | 1 cut(s) | 538 |
| Bse1I | ACTGG | 2 cut(s) | 357, 746 |
| Bse21I | CCTNAGG | 1 cut(s) | 429 |
| BseAI | TCCGGA | 1 cut(s) | 398 |
| BseBI | CCWGG | 2 cut(s) | 261, 598 |
| BseDI | CCNNGG | 3 cut(s) | 596, 846, 912 |
| BseGI | GGATG | 3 cut(s) | 882, 1077, 1133 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 352, 710, 805 |
| BseMII | CTCAG | 7 cut(s) | 132, 264, 308, 384, 443, 504, 1209 |
| BseNI | ACTGG | 2 cut(s) | 357, 746 |
| BseXI | GCAGC | 4 cut(s) | 143, 214, 628, 1279 |
| BseYI | CCCAGC | 2 cut(s) | 833, 1117 |
| BshFI | GGCC | 4 cut(s) | 202, 434, 488, 538 |
| BshNI | GGYRCC | 1 cut(s) | 838 |
| BsiSI | CCGG | 2 cut(s) | 399, 539 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 352, 710, 805 |
| BsmAI | GTCTC | 1 cut(s) | 789 |
| BsnI | GGCC | 4 cut(s) | 202, 434, 488, 538 |
| Bso31I | GGTCTC | 1 cut(s) | 789 |
| Bsp119I | TTCGAA | 1 cut(s) | 1225 |
| Bsp13I | TCCGGA | 1 cut(s) | 398 |
| Bsp1407I | TGTACA | 1 cut(s) | 309 |
| Bsp143I | GATC | 2 cut(s) | 58, 144 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1200 |
| BspACI | CCGC | 2 cut(s) | 346, 389 |
| BspANI | GGCC | 4 cut(s) | 202, 434, 488, 538 |
| BspCNI | CTCAG | 7 cut(s) | 133, 263, 309, 383, 442, 503, 1208 |
| BspEI | TCCGGA | 1 cut(s) | 398 |
| BspLI | GGNNCC | 3 cut(s) | 435, 702, 840 |
| BspPI | GGATC | 1 cut(s) | 53 |
| BspT104I | TTCGAA | 1 cut(s) | 1225 |
| BspT107I | GGYRCC | 1 cut(s) | 838 |
| BspTNI | GGTCTC | 1 cut(s) | 789 |
| BsrFI | RCCGGY | 1 cut(s) | 538 |
| BsrGI | TGTACA | 1 cut(s) | 309 |
| BsrI | ACTGG | 2 cut(s) | 357, 746 |
| BssAI | RCCGGY | 1 cut(s) | 538 |
| BssECI | CCNNGG | 3 cut(s) | 596, 846, 912 |
| BssMI | GATC | 2 cut(s) | 58, 144 |
| BssT1I | CCWWGG | 2 cut(s) | 846, 912 |
| Bst2UI | CCWGG | 2 cut(s) | 261, 598 |
| Bst4CI | ACNGT | 3 cut(s) | 70, 727, 1035 |
| Bst6I | CTCTTC | 1 cut(s) | 667 |
| BstAUI | TGTACA | 1 cut(s) | 309 |
| BstBI | TTCGAA | 1 cut(s) | 1225 |
| BstC8I | GCNNGC | 5 cut(s) | 540, 843, 874, 1206, 1218 |
| BstDEI | CTNAG | 8 cut(s) | 141, 250, 317, 370, 429, 490, 1195, 1200 |
| BstF5I | GGATG | 3 cut(s) | 882, 1077, 1133 |
| BstH2I | RGCGCY | 1 cut(s) | 904 |
| BstHHI | GCGC | 1 cut(s) | 903 |
| BstKTI | GATC | 2 cut(s) | 61, 147 |
| BstMAI | GTCTC | 1 cut(s) | 789 |
| BstMBI | GATC | 2 cut(s) | 58, 144 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1169, 1205 |
| BstNI | CCWGG | 2 cut(s) | 261, 598 |
| BstNSI | RCATGY | 1 cut(s) | 126 |
| BstSCI | CCNGG | 2 cut(s) | 259, 596 |
| BstSFI | CTRYAG | 1 cut(s) | 1253 |
| BstV1I | GCAGC | 4 cut(s) | 143, 214, 628, 1279 |
| BstX2I | RGATCY | 1 cut(s) | 144 |
| BstYI | RGATCY | 1 cut(s) | 144 |
| Bsu36I | CCTNAGG | 1 cut(s) | 429 |
| BsuRI | GGCC | 4 cut(s) | 202, 434, 488, 538 |
| BtsCI | GGATG | 3 cut(s) | 882, 1077, 1133 |
| Cac8I | GCNNGC | 5 cut(s) | 540, 843, 874, 1206, 1218 |
| CfoI | GCGC | 1 cut(s) | 903 |
| Cfr10I | RCCGGY | 1 cut(s) | 538 |
| Cfr13I | GGNCC | 4 cut(s) | 51, 263, 433, 850 |
| Csp6I | GTAC | 3 cut(s) | 120, 310, 494 |
| CviAII | CATG | 4 cut(s) | 123, 181, 1054, 1187 |
| CviQI | GTAC | 3 cut(s) | 120, 310, 494 |
| DdeI | CTNAG | 8 cut(s) | 141, 250, 317, 370, 429, 490, 1195, 1200 |
| DpnI | GATC | 2 cut(s) | 60, 146 |
| DpnII | GATC | 2 cut(s) | 58, 144 |
| Eam1104I | CTCTTC | 1 cut(s) | 667 |
| EarI | CTCTTC | 1 cut(s) | 667 |
| Eco130I | CCWWGG | 2 cut(s) | 846, 912 |
| Eco147I | AGGCCT | 2 cut(s) | 202, 488 |
| Eco31I | GGTCTC | 1 cut(s) | 789 |
| Eco32I | GATATC | 1 cut(s) | 358 |
| Eco47I | GGWCC | 3 cut(s) | 51, 263, 850 |
| Eco47III | AGCGCT | 1 cut(s) | 902 |
| Eco57I | CTGAAG | 2 cut(s) | 135, 654 |
| Eco81I | CCTNAGG | 1 cut(s) | 429 |
| EcoO109I | RGGNCCY | 1 cut(s) | 433 |
| EcoRII | CCWGG | 2 cut(s) | 259, 596 |
| EcoRV | GATATC | 1 cut(s) | 358 |
| EcoT14I | CCWWGG | 2 cut(s) | 846, 912 |
| ErhI | CCWWGG | 2 cut(s) | 846, 912 |
| FaeI | CATG | 4 cut(s) | 126, 184, 1057, 1190 |
| FatI | CATG | 4 cut(s) | 122, 180, 1053, 1186 |
| FauI | CCCGC | 1 cut(s) | 353 |
| FblI | GTMKAC | 2 cut(s) | 617, 940 |
| Fnu4HI | GCNGC | 4 cut(s) | 132, 228, 642, 1293 |
| FokI | GGATG | 3 cut(s) | 869, 1084, 1140 |
| Fsp4HI | GCNGC | 4 cut(s) | 132, 228, 642, 1293 |
| FspBI | CTAG | 3 cut(s) | 281, 591, 959 |
| GlaI | GCGC | 1 cut(s) | 902 |
| GluI | GCNGC | 4 cut(s) | 132, 228, 642, 1293 |
| GsaI | CCCAGC | 2 cut(s) | 837, 1121 |
| HaeII | RGCGCY | 1 cut(s) | 904 |
| HaeIII | GGCC | 4 cut(s) | 202, 434, 488, 538 |
| HapII | CCGG | 2 cut(s) | 399, 539 |
| HhaI | GCGC | 1 cut(s) | 903 |
| Hin1II | CATG | 4 cut(s) | 126, 184, 1057, 1190 |
| Hin6I | GCGC | 1 cut(s) | 901 |
| HinP1I | GCGC | 1 cut(s) | 901 |
| HindIII | AAGCTT | 2 cut(s) | 21, 689 |
| HinfI | GANTC | 6 cut(s) | 82, 366, 395, 520, 988, 1079 |
| HpaII | CCGG | 2 cut(s) | 399, 539 |
| HphI | GGTGA | 3 cut(s) | 494, 901, 938 |
| Hpy166II | GTNNAC | 4 cut(s) | 394, 618, 941, 1192 |
| Hpy188I | TCNGA | 6 cut(s) | 18, 142, 153, 253, 685, 993 |
| Hpy188III | TCNNGA | 7 cut(s) | 62, 98, 326, 399, 632, 750, 959 |
| Hpy8I | GTNNAC | 4 cut(s) | 394, 618, 941, 1192 |
| Hpy99I | CGWCG | 1 cut(s) | 1143 |
| HpyAV | CCTTC | 2 cut(s) | 110, 326 |
| HpyCH4III | ACNGT | 3 cut(s) | 70, 727, 1035 |
| HpyCH4V | TGCA | 4 cut(s) | 131, 230, 244, 998 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1169, 1205 |
| HpyF3I | CTNAG | 8 cut(s) | 141, 250, 317, 370, 429, 490, 1195, 1200 |
| Hsp92II | CATG | 4 cut(s) | 126, 184, 1057, 1190 |
| HspAI | GCGC | 1 cut(s) | 901 |
| Kpn2I | TCCGGA | 1 cut(s) | 398 |
| KroI | GCCGGC | 1 cut(s) | 538 |
| KroNI | GCCGGC | 1 cut(s) | 540 |
| Kzo9I | GATC | 2 cut(s) | 58, 144 |
| LmnI | GCTCC | 5 cut(s) | 178, 610, 700, 808, 1121 |
| Lsp1109I | GCAGC | 4 cut(s) | 143, 214, 628, 1279 |
| LweI | GCATC | 2 cut(s) | 118, 331 |
| MaeI | CTAG | 3 cut(s) | 281, 591, 959 |
| MaeIII | GTNAC | 1 cut(s) | 297 |
| MalI | GATC | 2 cut(s) | 60, 146 |
| MboI | GATC | 2 cut(s) | 58, 144 |
| MboII | GAAGA | 7 cut(s) | 97, 200, 331, 466, 684, 712, 970 |
| MflI | RGATCY | 1 cut(s) | 144 |
| MluCI | AATT | 4 cut(s) | 88, 526, 1005, 1154 |
| MlyI | GAGTC | 3 cut(s) | 360, 389, 997 |
| MmeI | TCCRAC | 1 cut(s) | 1273 |
| MroI | TCCGGA | 1 cut(s) | 398 |
| MroNI | GCCGGC | 1 cut(s) | 538 |
| MroXI | GAANNNNTTC | 1 cut(s) | 759 |
| MseI | TTAA | 8 cut(s) | 72, 579, 665, 729, 804, 1026, 1062, 1300 |
| MslI | CAYNNNNRTG | 1 cut(s) | 183 |
| MspA1I | CMGCKG | 1 cut(s) | 1258 |
| MspI | CCGG | 2 cut(s) | 399, 539 |
| MspR9I | CCNGG | 2 cut(s) | 261, 598 |
| MvaI | CCWGG | 2 cut(s) | 261, 598 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1169, 1205 |
| NaeI | GCCGGC | 1 cut(s) | 540 |
| NdeII | GATC | 2 cut(s) | 58, 144 |
| NgoMIV | GCCGGC | 1 cut(s) | 538 |
| NlaIII | CATG | 4 cut(s) | 126, 184, 1057, 1190 |
| NlaIV | GGNNCC | 3 cut(s) | 435, 702, 840 |
| NmuCI | GTSAC | 1 cut(s) | 297 |
| NspI | RCATGY | 1 cut(s) | 126 |
| NspV | TTCGAA | 1 cut(s) | 1225 |
| PceI | AGGCCT | 2 cut(s) | 202, 488 |
| PciI | ACATGT | 1 cut(s) | 122 |
| PdiI | GCCGGC | 1 cut(s) | 540 |
| PdmI | GAANNNNTTC | 1 cut(s) | 759 |
| PfeI | GAWTC | 3 cut(s) | 82, 520, 1079 |
| PfoI | TCCNGGA | 1 cut(s) | 259 |
| PkrI | GCNGC | 4 cut(s) | 133, 229, 643, 1294 |
| PleI | GAGTC | 3 cut(s) | 360, 389, 996 |
| PpsI | GAGTC | 3 cut(s) | 360, 389, 996 |
| PscI | ACATGT | 1 cut(s) | 122 |
| PshBI | ATTAAT | 1 cut(s) | 579 |
| Psp6I | CCWGG | 2 cut(s) | 259, 596 |
| PspFI | CCCAGC | 2 cut(s) | 833, 1117 |
| PspGI | CCWGG | 2 cut(s) | 259, 596 |
| PspN4I | GGNNCC | 3 cut(s) | 435, 702, 840 |
| PspPI | GGNCC | 4 cut(s) | 51, 263, 433, 850 |
| PsuI | RGATCY | 1 cut(s) | 144 |
| PvuII | CAGCTG | 1 cut(s) | 1258 |
| RsaI | GTAC | 3 cut(s) | 121, 311, 495 |
| RsaNI | GTAC | 3 cut(s) | 120, 310, 494 |
| RseI | CAYNNNNRTG | 1 cut(s) | 183 |
| SaqAI | TTAA | 8 cut(s) | 72, 579, 665, 729, 804, 1026, 1062, 1300 |
| SatI | GCNGC | 4 cut(s) | 132, 228, 642, 1293 |
| Sau3AI | GATC | 2 cut(s) | 58, 144 |
| Sau96I | GGNCC | 4 cut(s) | 51, 263, 433, 850 |
| SchI | GAGTC | 3 cut(s) | 360, 389, 997 |
| ScrFI | CCNGG | 2 cut(s) | 261, 598 |
| SfaNI | GCATC | 2 cut(s) | 118, 331 |
| SfcI | CTRYAG | 1 cut(s) | 1253 |
| SfuI | TTCGAA | 1 cut(s) | 1225 |
| SinI | GGWCC | 3 cut(s) | 51, 263, 850 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 183 |
| SmlI | CTYRAG | 3 cut(s) | 532, 1094, 1235 |
| SmoI | CTYRAG | 3 cut(s) | 532, 1094, 1235 |
| Sse9I | AATT | 4 cut(s) | 88, 526, 1005, 1154 |
| SseBI | AGGCCT | 2 cut(s) | 202, 488 |
| SsiI | CCGC | 2 cut(s) | 346, 389 |
| SspI | AATATT | 1 cut(s) | 503 |
| SspMI | CTAG | 3 cut(s) | 281, 591, 959 |
| StuI | AGGCCT | 2 cut(s) | 202, 488 |
| StyD4I | CCNGG | 2 cut(s) | 259, 596 |
| StyI | CCWWGG | 2 cut(s) | 846, 912 |
| TaaI | ACNGT | 3 cut(s) | 70, 727, 1035 |
| TaqI | TCGA | 1 cut(s) | 1225 |
| TasI | AATT | 4 cut(s) | 88, 526, 1005, 1154 |
| TatI | WGTACW | 2 cut(s) | 309, 493 |
| TfiI | GAWTC | 3 cut(s) | 82, 520, 1079 |
| Tru1I | TTAA | 8 cut(s) | 72, 579, 665, 729, 804, 1026, 1062, 1300 |
| Tru9I | TTAA | 8 cut(s) | 72, 579, 665, 729, 804, 1026, 1062, 1300 |
| TseFI | GTSAC | 1 cut(s) | 297 |
| TseI | GCWGC | 4 cut(s) | 131, 227, 641, 1292 |
| Tsp45I | GTSAC | 1 cut(s) | 297 |
| TspDTI | ATGAA | 6 cut(s) | 60, 179, 197, 201, 231, 1147 |
| TspGWI | ACGGA | 1 cut(s) | 650 |
| VpaK11BI | GGWCC | 3 cut(s) | 51, 263, 850 |
| VspI | ATTAAT | 1 cut(s) | 579 |
| XapI | RAATTY | 1 cut(s) | 1005 |
| XbaI | TCTAGA | 1 cut(s) | 958 |
| XceI | RCATGY | 1 cut(s) | 126 |
| XmiI | GTMKAC | 2 cut(s) | 617, 940 |
| XmnI | GAANNNNTTC | 1 cut(s) | 759 |
| XspI | CTAG | 3 cut(s) | 281, 591, 959 |