Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 250 |
| AccB1I | GGYRCC | 2 cut(s) | 805, 883 |
| AccIII | TCCGGA | 1 cut(s) | 472 |
| AciI | CCGC | 3 cut(s) | 245, 422, 452 |
| AclWI | GGATC | 1 cut(s) | 290 |
| AcsI | RAATTY | 2 cut(s) | 316, 412 |
| AfaI | GTAC | 2 cut(s) | 274, 645 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 629, 634, 715 |
| AflIII | ACRYGT | 2 cut(s) | 646, 901 |
| AhlI | ACTAGT | 1 cut(s) | 566 |
| AjiI | CACGTC | 1 cut(s) | 904 |
| AjnI | CCWGG | 1 cut(s) | 628 |
| AluBI | AGCT | 5 cut(s) | 146, 400, 431, 620, 843 |
| AluI | AGCT | 5 cut(s) | 146, 400, 431, 620, 843 |
| Alw21I | GWGCWC | 1 cut(s) | 564 |
| Alw26I | GTCTC | 2 cut(s) | 94, 743 |
| AlwI | GGATC | 1 cut(s) | 290 |
| Aor13HI | TCCGGA | 1 cut(s) | 472 |
| AoxI | GGCC | 2 cut(s) | 247, 311 |
| ApeKI | GCWGC | 2 cut(s) | 224, 617 |
| ApoI | RAATTY | 2 cut(s) | 316, 412 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 414 |
| AspS9I | GGNCC | 2 cut(s) | 247, 341 |
| AsuC2I | CCSGG | 1 cut(s) | 117 |
| AsuHPI | GGTGA | 1 cut(s) | 139 |
| AvaII | GGWCC | 1 cut(s) | 341 |
| BanI | GGYRCC | 2 cut(s) | 805, 883 |
| Bbv12I | GWGCWC | 1 cut(s) | 564 |
| BbvI | GCAGC | 2 cut(s) | 211, 629 |
| BccI | CCATC | 6 cut(s) | 90, 249, 367, 374, 713, 874 |
| BciT130I | CCWGG | 1 cut(s) | 630 |
| BciVI | GTATCC | 1 cut(s) | 123 |
| BclI | TGATCA | 1 cut(s) | 891 |
| BcnI | CCSGG | 1 cut(s) | 117 |
| BcoDI | GTCTC | 2 cut(s) | 94, 743 |
| BcuI | ACTAGT | 1 cut(s) | 566 |
| BfaI | CTAG | 3 cut(s) | 567, 840, 851 |
| BfuAI | ACCTGC | 1 cut(s) | 250 |
| BfuI | GTATCC | 1 cut(s) | 123 |
| BisI | GCNGC | 2 cut(s) | 225, 618 |
| BlsI | GCNGC | 2 cut(s) | 226, 619 |
| Bme1390I | CCNGG | 2 cut(s) | 117, 630 |
| Bme18I | GGWCC | 1 cut(s) | 341 |
| BmgBI | CACGTC | 1 cut(s) | 904 |
| BmgT120I | GGNCC | 2 cut(s) | 247, 341 |
| BmiI | GGNNCC | 3 cut(s) | 343, 807, 885 |
| BmrFI | CCNGG | 2 cut(s) | 117, 630 |
| BmrI | ACTGGG | 1 cut(s) | 704 |
| BmuI | ACTGGG | 1 cut(s) | 704 |
| BpmI | CTGGAG | 1 cut(s) | 229 |
| BpuMI | CCSGG | 1 cut(s) | 117 |
| Bsa29I | ATCGAT | 1 cut(s) | 878 |
| BsaI | GGTCTC | 1 cut(s) | 743 |
| BsaJI | CCNNGG | 3 cut(s) | 299, 308, 628 |
| BsaWI | WCCGGW | 3 cut(s) | 472, 556, 820 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 629, 634, 715 |
| Bse1I | ACTGG | 1 cut(s) | 710 |
| BseAI | TCCGGA | 1 cut(s) | 472 |
| BseBI | CCWGG | 1 cut(s) | 630 |
| BseCI | ATCGAT | 1 cut(s) | 878 |
| BseDI | CCNNGG | 3 cut(s) | 299, 308, 628 |
| BseGI | GGATG | 6 cut(s) | 101, 298, 385, 430, 553, 724 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 629, 634, 715 |
| BseMII | CTCAG | 1 cut(s) | 706 |
| BseNI | ACTGG | 1 cut(s) | 710 |
| BseRI | GAGGAG | 3 cut(s) | 47, 339, 761 |
| BseXI | GCAGC | 2 cut(s) | 211, 629 |
| BshFI | GGCC | 2 cut(s) | 249, 313 |
| BshNI | GGYRCC | 2 cut(s) | 805, 883 |
| BshVI | ATCGAT | 1 cut(s) | 878 |
| BsiHKAI | GWGCWC | 1 cut(s) | 564 |
| BsiSI | CCGG | 4 cut(s) | 116, 473, 557, 821 |
| BslFI | GGGAC | 2 cut(s) | 327, 692 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 629, 634, 715 |
| BsmAI | GTCTC | 2 cut(s) | 94, 743 |
| BsmFI | GGGAC | 2 cut(s) | 327, 692 |
| BsnI | GGCC | 2 cut(s) | 249, 313 |
| Bso31I | GGTCTC | 1 cut(s) | 743 |
| Bsp1286I | GDGCHC | 1 cut(s) | 564 |
| Bsp13I | TCCGGA | 1 cut(s) | 472 |
| Bsp143I | GATC | 3 cut(s) | 295, 367, 891 |
| BspACI | CCGC | 3 cut(s) | 245, 422, 452 |
| BspANI | GGCC | 2 cut(s) | 249, 313 |
| BspCNI | CTCAG | 1 cut(s) | 705 |
| BspDI | ATCGAT | 1 cut(s) | 878 |
| BspEI | TCCGGA | 1 cut(s) | 472 |
| BspLI | GGNNCC | 3 cut(s) | 343, 807, 885 |
| BspMI | ACCTGC | 1 cut(s) | 250 |
| BspPI | GGATC | 1 cut(s) | 290 |
| BspQI | GCTCTTC | 1 cut(s) | 580 |
| BspT107I | GGYRCC | 2 cut(s) | 805, 883 |
| BspTNI | GGTCTC | 1 cut(s) | 743 |
| BsrI | ACTGG | 1 cut(s) | 710 |
| BssECI | CCNNGG | 3 cut(s) | 299, 308, 628 |
| BssMI | GATC | 3 cut(s) | 295, 367, 891 |
| BssT1I | CCWWGG | 2 cut(s) | 299, 308 |
| Bst2UI | CCWGG | 1 cut(s) | 630 |
| Bst4CI | ACNGT | 2 cut(s) | 111, 272 |
| Bst6I | CTCTTC | 4 cut(s) | 169, 580, 697, 738 |
| BstC8I | GCNNGC | 5 cut(s) | 63, 84, 205, 247, 861 |
| BstDEI | CTNAG | 3 cut(s) | 251, 455, 692 |
| BstF5I | GGATG | 6 cut(s) | 101, 298, 385, 430, 553, 724 |
| BstKTI | GATC | 3 cut(s) | 298, 370, 894 |
| BstMAI | GTCTC | 2 cut(s) | 94, 743 |
| BstMBI | GATC | 3 cut(s) | 295, 367, 891 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 83, 88, 428, 856 |
| BstNI | CCWGG | 1 cut(s) | 630 |
| BstNSI | RCATGY | 2 cut(s) | 65, 650 |
| BstSCI | CCNGG | 2 cut(s) | 115, 628 |
| BstV1I | GCAGC | 2 cut(s) | 211, 629 |
| Bsu15I | ATCGAT | 1 cut(s) | 878 |
| BsuI | GTATCC | 1 cut(s) | 123 |
| BsuRI | GGCC | 2 cut(s) | 249, 313 |
| BsuTUI | ATCGAT | 1 cut(s) | 878 |
| BtrI | CACGTC | 1 cut(s) | 904 |
| BtsCI | GGATG | 6 cut(s) | 101, 298, 385, 430, 553, 724 |
| BtsIMutI | CAGTG | 1 cut(s) | 240 |
| BveI | ACCTGC | 1 cut(s) | 250 |
| Cac8I | GCNNGC | 5 cut(s) | 63, 84, 205, 247, 861 |
| Cfr13I | GGNCC | 2 cut(s) | 247, 341 |
| ClaI | ATCGAT | 1 cut(s) | 878 |
| CseI | GACGC | 2 cut(s) | 2, 806 |
| Csp6I | GTAC | 2 cut(s) | 273, 644 |
| CviAII | CATG | 5 cut(s) | 6, 62, 194, 647, 761 |
| CviQI | GTAC | 2 cut(s) | 273, 644 |
| DdeI | CTNAG | 3 cut(s) | 251, 455, 692 |
| DpnI | GATC | 3 cut(s) | 297, 369, 893 |
| DpnII | GATC | 3 cut(s) | 295, 367, 891 |
| DraI | TTTAAA | 2 cut(s) | 142, 174 |
| Eam1104I | CTCTTC | 4 cut(s) | 169, 580, 697, 738 |
| EarI | CTCTTC | 4 cut(s) | 169, 580, 697, 738 |
| Eco130I | CCWWGG | 2 cut(s) | 299, 308 |
| Eco31I | GGTCTC | 1 cut(s) | 743 |
| Eco47I | GGWCC | 1 cut(s) | 341 |
| EcoRII | CCWGG | 1 cut(s) | 628 |
| EcoT14I | CCWWGG | 2 cut(s) | 299, 308 |
| ErhI | CCWWGG | 2 cut(s) | 299, 308 |
| FaeI | CATG | 5 cut(s) | 9, 65, 197, 650, 764 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 234, 266 |
| FaqI | GGGAC | 2 cut(s) | 327, 692 |
| FatI | CATG | 5 cut(s) | 5, 61, 193, 646, 760 |
| FauI | CCCGC | 1 cut(s) | 238 |
| FbaI | TGATCA | 1 cut(s) | 891 |
| Fnu4HI | GCNGC | 2 cut(s) | 225, 618 |
| FokI | GGATG | 6 cut(s) | 108, 305, 392, 437, 540, 731 |
| Fsp4HI | GCNGC | 2 cut(s) | 225, 618 |
| FspBI | CTAG | 3 cut(s) | 567, 840, 851 |
| GluI | GCNGC | 2 cut(s) | 225, 618 |
| GsuI | CTGGAG | 1 cut(s) | 229 |
| HaeIII | GGCC | 2 cut(s) | 249, 313 |
| HapII | CCGG | 4 cut(s) | 116, 473, 557, 821 |
| HgaI | GACGC | 2 cut(s) | 2, 806 |
| Hin1II | CATG | 5 cut(s) | 9, 65, 197, 650, 764 |
| HindIII | AAGCTT | 1 cut(s) | 429 |
| HinfI | GANTC | 4 cut(s) | 130, 304, 595, 705 |
| HpaII | CCGG | 4 cut(s) | 116, 473, 557, 821 |
| HphI | GGTGA | 1 cut(s) | 139 |
| Hpy166II | GTNNAC | 1 cut(s) | 513 |
| Hpy188I | TCNGA | 7 cut(s) | 53, 285, 372, 409, 594, 695, 742 |
| Hpy188III | TCNNGA | 1 cut(s) | 473 |
| Hpy8I | GTNNAC | 1 cut(s) | 513 |
| Hpy99I | CGWCG | 1 cut(s) | 908 |
| HpyCH4III | ACNGT | 2 cut(s) | 111, 272 |
| HpyCH4IV | ACGT | 1 cut(s) | 903 |
| HpyCH4V | TGCA | 3 cut(s) | 61, 527, 829 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 83, 88, 428, 856 |
| HpyF3I | CTNAG | 3 cut(s) | 251, 455, 692 |
| HpySE526I | ACGT | 1 cut(s) | 903 |
| Hsp92II | CATG | 5 cut(s) | 9, 65, 197, 650, 764 |
| Kpn2I | TCCGGA | 1 cut(s) | 472 |
| Ksp22I | TGATCA | 1 cut(s) | 891 |
| Kzo9I | GATC | 3 cut(s) | 295, 367, 891 |
| LguI | GCTCTTC | 1 cut(s) | 580 |
| LmnI | GCTCC | 4 cut(s) | 10, 29, 449, 625 |
| Lsp1109I | GCAGC | 2 cut(s) | 211, 629 |
| MaeI | CTAG | 3 cut(s) | 567, 840, 851 |
| MaeII | ACGT | 1 cut(s) | 903 |
| MaeIII | GTNAC | 2 cut(s) | 237, 734 |
| MalI | GATC | 3 cut(s) | 297, 369, 893 |
| MboI | GATC | 3 cut(s) | 295, 367, 891 |
| MboII | GAAGA | 4 cut(s) | 156, 567, 714, 755 |
| MhlI | GDGCHC | 1 cut(s) | 564 |
| MluCI | AATT | 7 cut(s) | 70, 316, 412, 438, 483, 534, 583 |
| MlyI | GAGTC | 3 cut(s) | 139, 604, 714 |
| MmeI | TCCRAC | 1 cut(s) | 244 |
| MnlI | CCTC | 9 cut(s) | 25, 28, 206, 355, 360, 589, 709, 739, 904 |
| MroI | TCCGGA | 1 cut(s) | 472 |
| MroXI | GAANNNNTTC | 1 cut(s) | 414 |
| MseI | TTAA | 3 cut(s) | 141, 173, 639 |
| MspI | CCGG | 4 cut(s) | 116, 473, 557, 821 |
| MspR9I | CCNGG | 2 cut(s) | 117, 630 |
| MvaI | CCWGG | 1 cut(s) | 630 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 83, 88, 428, 856 |
| NciI | CCSGG | 1 cut(s) | 117 |
| NdeII | GATC | 3 cut(s) | 295, 367, 891 |
| NlaIII | CATG | 5 cut(s) | 9, 65, 197, 650, 764 |
| NlaIV | GGNNCC | 3 cut(s) | 343, 807, 885 |
| NspI | RCATGY | 2 cut(s) | 65, 650 |
| PaeI | GCATGC | 1 cut(s) | 65 |
| PciI | ACATGT | 1 cut(s) | 646 |
| PciSI | GCTCTTC | 1 cut(s) | 580 |
| PdmI | GAANNNNTTC | 1 cut(s) | 414 |
| PfeI | GAWTC | 1 cut(s) | 304 |
| PkrI | GCNGC | 2 cut(s) | 226, 619 |
| PleI | GAGTC | 3 cut(s) | 138, 603, 713 |
| PpsI | GAGTC | 3 cut(s) | 138, 603, 713 |
| PscI | ACATGT | 1 cut(s) | 646 |
| Psp6I | CCWGG | 1 cut(s) | 628 |
| PspGI | CCWGG | 1 cut(s) | 628 |
| PspN4I | GGNNCC | 3 cut(s) | 343, 807, 885 |
| PspPI | GGNCC | 2 cut(s) | 247, 341 |
| RsaI | GTAC | 2 cut(s) | 274, 645 |
| RsaNI | GTAC | 2 cut(s) | 273, 644 |
| SapI | GCTCTTC | 1 cut(s) | 580 |
| SaqAI | TTAA | 3 cut(s) | 141, 173, 639 |
| SatI | GCNGC | 2 cut(s) | 225, 618 |
| Sau3AI | GATC | 3 cut(s) | 295, 367, 891 |
| Sau96I | GGNCC | 2 cut(s) | 247, 341 |
| SchI | GAGTC | 3 cut(s) | 139, 604, 714 |
| ScrFI | CCNGG | 2 cut(s) | 117, 630 |
| SduI | GDGCHC | 1 cut(s) | 564 |
| SinI | GGWCC | 1 cut(s) | 341 |
| SpeI | ACTAGT | 1 cut(s) | 566 |
| SphI | GCATGC | 1 cut(s) | 65 |
| Sse9I | AATT | 7 cut(s) | 70, 316, 412, 438, 483, 534, 583 |
| SsiI | CCGC | 3 cut(s) | 245, 422, 452 |
| SspI | AATATT | 1 cut(s) | 219 |
| SspMI | CTAG | 3 cut(s) | 567, 840, 851 |
| StyD4I | CCNGG | 2 cut(s) | 115, 628 |
| StyI | CCWWGG | 2 cut(s) | 299, 308 |
| TaaI | ACNGT | 2 cut(s) | 111, 272 |
| TaiI | ACGT | 1 cut(s) | 906 |
| TaqI | TCGA | 2 cut(s) | 700, 878 |
| TasI | AATT | 7 cut(s) | 70, 316, 412, 438, 483, 534, 583 |
| TfiI | GAWTC | 1 cut(s) | 304 |
| Tru1I | TTAA | 3 cut(s) | 141, 173, 639 |
| Tru9I | TTAA | 3 cut(s) | 141, 173, 639 |
| TscAI | CASTG | 1 cut(s) | 240 |
| TseI | GCWGC | 2 cut(s) | 224, 617 |
| TspDTI | ATGAA | 2 cut(s) | 441, 515 |
| TspRI | CASTG | 1 cut(s) | 240 |
| VpaK11BI | GGWCC | 1 cut(s) | 341 |
| XapI | RAATTY | 2 cut(s) | 316, 412 |
| XceI | RCATGY | 2 cut(s) | 65, 650 |
| XmnI | GAANNNNTTC | 1 cut(s) | 414 |
| XspI | CTAG | 3 cut(s) | 567, 840, 851 |