Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 363 |
| Acc36I | ACCTGC | 1 cut(s) | 280 |
| Acc65I | GGTACC | 1 cut(s) | 69 |
| AccB1I | GGYRCC | 1 cut(s) | 69 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 596 |
| AccI | GTMKAC | 1 cut(s) | 499 |
| AciI | CCGC | 1 cut(s) | 89 |
| AcvI | CACGTG | 1 cut(s) | 423 |
| AcyI | GRCGYC | 1 cut(s) | 360 |
| AfaI | GTAC | 3 cut(s) | 32, 71, 640 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 551, 596 |
| AgsI | TTSAA | 5 cut(s) | 95, 185, 335, 430, 459 |
| AjnI | CCWGG | 2 cut(s) | 465, 589 |
| AluBI | AGCT | 4 cut(s) | 270, 306, 538, 582 |
| AluI | AGCT | 4 cut(s) | 270, 306, 538, 582 |
| Alw21I | GWGCWC | 1 cut(s) | 540 |
| Alw26I | GTCTC | 1 cut(s) | 511 |
| AoxI | GGCC | 1 cut(s) | 318 |
| ApaI | GGGCCC | 1 cut(s) | 322 |
| ApeKI | GCWGC | 2 cut(s) | 443, 650 |
| AseI | ATTAAT | 1 cut(s) | 338 |
| Asp718I | GGTACC | 1 cut(s) | 69 |
| AspS9I | GGNCC | 2 cut(s) | 318, 319 |
| AsuHPI | GGTGA | 2 cut(s) | 611, 728 |
| BaeGI | GKGCMC | 1 cut(s) | 322 |
| BanI | GGYRCC | 1 cut(s) | 69 |
| BanII | GRGCYC | 2 cut(s) | 322, 540 |
| BbrPI | CACGTG | 1 cut(s) | 423 |
| Bbv12I | GWGCWC | 1 cut(s) | 540 |
| BbvI | GCAGC | 2 cut(s) | 455, 662 |
| BccI | CCATC | 4 cut(s) | 206, 569, 596, 649 |
| BciT130I | CCWGG | 2 cut(s) | 467, 591 |
| BcoDI | GTCTC | 1 cut(s) | 511 |
| BfaI | CTAG | 5 cut(s) | 11, 105, 264, 549, 717 |
| BfmI | CTRYAG | 1 cut(s) | 52 |
| BfuAI | ACCTGC | 1 cut(s) | 280 |
| BisI | GCNGC | 2 cut(s) | 444, 651 |
| BlsI | GCNGC | 2 cut(s) | 445, 652 |
| Bme1390I | CCNGG | 2 cut(s) | 467, 591 |
| BmgT120I | GGNCC | 2 cut(s) | 318, 319 |
| BmiI | GGNNCC | 5 cut(s) | 71, 127, 294, 320, 464 |
| BmrFI | CCNGG | 2 cut(s) | 467, 591 |
| BmrI | ACTGGG | 1 cut(s) | 516 |
| BmsI | GCATC | 1 cut(s) | 225 |
| BmuI | ACTGGG | 1 cut(s) | 516 |
| BpmI | CTGGAG | 1 cut(s) | 172 |
| BsaAI | YACGTR | 1 cut(s) | 423 |
| BsaHI | GRCGYC | 1 cut(s) | 360 |
| BsaI | GGTCTC | 1 cut(s) | 511 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 551, 596 |
| Bse1I | ACTGG | 1 cut(s) | 522 |
| BseBI | CCWGG | 2 cut(s) | 467, 591 |
| BseGI | GGATG | 3 cut(s) | 216, 217, 580 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 551, 596 |
| BseMII | CTCAG | 1 cut(s) | 506 |
| BseNI | ACTGG | 1 cut(s) | 522 |
| BseSI | GKGCMC | 1 cut(s) | 322 |
| BseXI | GCAGC | 2 cut(s) | 455, 662 |
| BsgI | GTGCAG | 1 cut(s) | 175 |
| BshFI | GGCC | 1 cut(s) | 320 |
| BshNI | GGYRCC | 1 cut(s) | 69 |
| BsiHKAI | GWGCWC | 1 cut(s) | 540 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 551, 596 |
| BsmAI | GTCTC | 1 cut(s) | 511 |
| BsnI | GGCC | 1 cut(s) | 320 |
| Bso31I | GGTCTC | 1 cut(s) | 511 |
| Bsp120I | GGGCCC | 1 cut(s) | 318 |
| Bsp1286I | GDGCHC | 2 cut(s) | 322, 540 |
| Bsp143I | GATC | 2 cut(s) | 7, 62 |
| BspACI | CCGC | 1 cut(s) | 89 |
| BspANI | GGCC | 1 cut(s) | 320 |
| BspCNI | CTCAG | 1 cut(s) | 507 |
| BspLI | GGNNCC | 5 cut(s) | 71, 127, 294, 320, 464 |
| BspMI | ACCTGC | 1 cut(s) | 280 |
| BspT107I | GGYRCC | 1 cut(s) | 69 |
| BspTNI | GGTCTC | 1 cut(s) | 511 |
| BsrI | ACTGG | 1 cut(s) | 522 |
| BssMI | GATC | 2 cut(s) | 7, 62 |
| BssNI | GRCGYC | 1 cut(s) | 360 |
| Bst2UI | CCWGG | 2 cut(s) | 467, 591 |
| Bst4CI | ACNGT | 1 cut(s) | 378 |
| BstACI | GRCGYC | 1 cut(s) | 360 |
| BstBAI | YACGTR | 1 cut(s) | 423 |
| BstC8I | GCNNGC | 3 cut(s) | 168, 371, 709 |
| BstDEI | CTNAG | 1 cut(s) | 515 |
| BstF5I | GGATG | 3 cut(s) | 216, 217, 580 |
| BstKTI | GATC | 2 cut(s) | 10, 65 |
| BstMAI | GTCTC | 1 cut(s) | 511 |
| BstMBI | GATC | 2 cut(s) | 7, 62 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 86, 440, 452, 656, 713 |
| BstNI | CCWGG | 2 cut(s) | 467, 591 |
| BstNSI | RCATGY | 3 cut(s) | 170, 373, 711 |
| BstSCI | CCNGG | 2 cut(s) | 465, 589 |
| BstSFI | CTRYAG | 1 cut(s) | 52 |
| BstSLI | GKGCMC | 1 cut(s) | 322 |
| BstV1I | GCAGC | 2 cut(s) | 455, 662 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 494 |
| BsuRI | GGCC | 1 cut(s) | 320 |
| BtgZI | GCGATG | 1 cut(s) | 668 |
| BtsCI | GGATG | 3 cut(s) | 216, 217, 580 |
| BveI | ACCTGC | 1 cut(s) | 280 |
| Cac8I | GCNNGC | 3 cut(s) | 168, 371, 709 |
| Cfr13I | GGNCC | 2 cut(s) | 318, 319 |
| CsiI | ACCWGGT | 1 cut(s) | 589 |
| Csp6I | GTAC | 3 cut(s) | 31, 70, 639 |
| CviAII | CATG | 8 cut(s) | 27, 74, 167, 344, 370, 440, 610, 708 |
| CviQI | GTAC | 3 cut(s) | 31, 70, 639 |
| DdeI | CTNAG | 1 cut(s) | 515 |
| DpnI | GATC | 2 cut(s) | 9, 64 |
| DpnII | GATC | 2 cut(s) | 7, 62 |
| DraI | TTTAAA | 1 cut(s) | 229 |
| Ecl136II | GAGCTC | 1 cut(s) | 538 |
| Eco24I | GRGCYC | 2 cut(s) | 322, 540 |
| Eco31I | GGTCTC | 1 cut(s) | 511 |
| Eco53kI | GAGCTC | 1 cut(s) | 538 |
| Eco72I | CACGTG | 1 cut(s) | 423 |
| EcoICRI | GAGCTC | 1 cut(s) | 538 |
| EcoO109I | RGGNCCY | 1 cut(s) | 319 |
| EcoRII | CCWGG | 2 cut(s) | 465, 589 |
| EcoT22I | ATGCAT | 2 cut(s) | 345, 693 |
| EcoT38I | GRGCYC | 2 cut(s) | 322, 540 |
| FaeI | CATG | 8 cut(s) | 30, 77, 170, 347, 373, 443, 613, 711 |
| FatI | CATG | 8 cut(s) | 26, 73, 166, 343, 369, 439, 609, 707 |
| FauNDI | CATATG | 1 cut(s) | 693 |
| FblI | GTMKAC | 1 cut(s) | 499 |
| Fnu4HI | GCNGC | 2 cut(s) | 444, 651 |
| FokI | GGATG | 3 cut(s) | 203, 224, 587 |
| FriOI | GRGCYC | 2 cut(s) | 322, 540 |
| Fsp4HI | GCNGC | 2 cut(s) | 444, 651 |
| FspBI | CTAG | 5 cut(s) | 11, 105, 264, 549, 717 |
| GluI | GCNGC | 2 cut(s) | 444, 651 |
| GsuI | CTGGAG | 1 cut(s) | 172 |
| HaeIII | GGCC | 1 cut(s) | 320 |
| Hin1I | GRCGYC | 1 cut(s) | 360 |
| Hin1II | CATG | 8 cut(s) | 30, 77, 170, 347, 373, 443, 613, 711 |
| HinfI | GANTC | 4 cut(s) | 101, 147, 349, 511 |
| HphI | GGTGA | 2 cut(s) | 611, 728 |
| Hpy166II | GTNNAC | 1 cut(s) | 500 |
| Hpy188I | TCNGA | 2 cut(s) | 62, 516 |
| Hpy188III | TCNNGA | 4 cut(s) | 11, 151, 182, 744 |
| Hpy8I | GTNNAC | 1 cut(s) | 500 |
| HpyAV | CCTTC | 1 cut(s) | 150 |
| HpyCH4III | ACNGT | 1 cut(s) | 378 |
| HpyCH4IV | ACGT | 4 cut(s) | 97, 194, 360, 422 |
| HpyCH4V | TGCA | 9 cut(s) | 170, 192, 203, 343, 369, 443, 650, 691, 711 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 86, 440, 452, 656, 713 |
| HpyF3I | CTNAG | 1 cut(s) | 515 |
| HpySE526I | ACGT | 4 cut(s) | 97, 194, 360, 422 |
| Hsp92I | GRCGYC | 1 cut(s) | 360 |
| Hsp92II | CATG | 8 cut(s) | 30, 77, 170, 347, 373, 443, 613, 711 |
| KpnI | GGTACC | 1 cut(s) | 73 |
| Kzo9I | GATC | 2 cut(s) | 7, 62 |
| LmnI | GCTCC | 2 cut(s) | 535, 543 |
| Lsp1109I | GCAGC | 2 cut(s) | 455, 662 |
| LweI | GCATC | 1 cut(s) | 225 |
| MabI | ACCWGGT | 1 cut(s) | 589 |
| MaeI | CTAG | 5 cut(s) | 11, 105, 264, 549, 717 |
| MaeII | ACGT | 4 cut(s) | 97, 194, 360, 422 |
| MalI | GATC | 2 cut(s) | 9, 64 |
| MboI | GATC | 2 cut(s) | 7, 62 |
| MhlI | GDGCHC | 2 cut(s) | 322, 540 |
| MluCI | AATT | 2 cut(s) | 335, 354 |
| MlyI | GAGTC | 1 cut(s) | 358 |
| MnlI | CCTC | 9 cut(s) | 7, 127, 189, 202, 304, 445, 625, 681, 697 |
| Mph1103I | ATGCAT | 2 cut(s) | 345, 693 |
| MseI | TTAA | 5 cut(s) | 23, 228, 324, 338, 624 |
| MspR9I | CCNGG | 2 cut(s) | 467, 591 |
| MvaI | CCWGG | 2 cut(s) | 467, 591 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 86, 440, 452, 656, 713 |
| NdeI | CATATG | 1 cut(s) | 693 |
| NdeII | GATC | 2 cut(s) | 7, 62 |
| NlaIII | CATG | 8 cut(s) | 30, 77, 170, 347, 373, 443, 613, 711 |
| NlaIV | GGNNCC | 5 cut(s) | 71, 127, 294, 320, 464 |
| NsiI | ATGCAT | 2 cut(s) | 345, 693 |
| NspI | RCATGY | 3 cut(s) | 170, 373, 711 |
| PaeI | GCATGC | 3 cut(s) | 170, 373, 711 |
| PfeI | GAWTC | 3 cut(s) | 101, 147, 511 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 596 |
| PkrI | GCNGC | 2 cut(s) | 445, 652 |
| PleI | GAGTC | 1 cut(s) | 357 |
| PmaCI | CACGTG | 1 cut(s) | 423 |
| PmlI | CACGTG | 1 cut(s) | 423 |
| PpsI | GAGTC | 1 cut(s) | 357 |
| Ppu21I | YACGTR | 1 cut(s) | 423 |
| PshBI | ATTAAT | 1 cut(s) | 338 |
| Psp124BI | GAGCTC | 1 cut(s) | 540 |
| Psp6I | CCWGG | 2 cut(s) | 465, 589 |
| PspCI | CACGTG | 1 cut(s) | 423 |
| PspGI | CCWGG | 2 cut(s) | 465, 589 |
| PspN4I | GGNNCC | 5 cut(s) | 71, 127, 294, 320, 464 |
| PspOMI | GGGCCC | 1 cut(s) | 318 |
| PspPI | GGNCC | 2 cut(s) | 318, 319 |
| RsaI | GTAC | 3 cut(s) | 32, 71, 640 |
| RsaNI | GTAC | 3 cut(s) | 31, 70, 639 |
| SacI | GAGCTC | 1 cut(s) | 540 |
| SaqAI | TTAA | 5 cut(s) | 23, 228, 324, 338, 624 |
| SatI | GCNGC | 2 cut(s) | 444, 651 |
| Sau3AI | GATC | 2 cut(s) | 7, 62 |
| Sau96I | GGNCC | 2 cut(s) | 318, 319 |
| SchI | GAGTC | 1 cut(s) | 358 |
| ScrFI | CCNGG | 2 cut(s) | 467, 591 |
| SduI | GDGCHC | 2 cut(s) | 322, 540 |
| SexAI | ACCWGGT | 1 cut(s) | 589 |
| SfaNI | GCATC | 1 cut(s) | 225 |
| SfcI | CTRYAG | 1 cut(s) | 52 |
| SphI | GCATGC | 3 cut(s) | 170, 373, 711 |
| Sse9I | AATT | 2 cut(s) | 335, 354 |
| SsiI | CCGC | 1 cut(s) | 89 |
| SspMI | CTAG | 5 cut(s) | 11, 105, 264, 549, 717 |
| SstI | GAGCTC | 1 cut(s) | 540 |
| StyD4I | CCNGG | 2 cut(s) | 465, 589 |
| TaaI | ACNGT | 1 cut(s) | 378 |
| TaiI | ACGT | 4 cut(s) | 100, 197, 363, 425 |
| TaqI | TCGA | 1 cut(s) | 82 |
| TaqII | GACCGA | 1 cut(s) | 517 |
| TasI | AATT | 2 cut(s) | 335, 354 |
| TfiI | GAWTC | 3 cut(s) | 101, 147, 511 |
| Tru1I | TTAA | 5 cut(s) | 23, 228, 324, 338, 624 |
| Tru9I | TTAA | 5 cut(s) | 23, 228, 324, 338, 624 |
| TseI | GCWGC | 2 cut(s) | 443, 650 |
| TspDTI | ATGAA | 2 cut(s) | 128, 542 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 596 |
| VspI | ATTAAT | 1 cut(s) | 338 |
| XbaI | TCTAGA | 1 cut(s) | 10 |
| XceI | RCATGY | 3 cut(s) | 170, 373, 711 |
| XmiI | GTMKAC | 1 cut(s) | 499 |
| XspI | CTAG | 5 cut(s) | 11, 105, 264, 549, 717 |
| ZraI | GACGTC | 1 cut(s) | 361 |
| Zsp2I | ATGCAT | 2 cut(s) | 345, 693 |