Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 26 - 145 | 8e-25 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 425 |
| AccB1I | GGYRCC | 1 cut(s) | 175 |
| AclI | AACGTT | 1 cut(s) | 78 |
| AcsI | RAATTY | 1 cut(s) | 221 |
| AfaI | GTAC | 1 cut(s) | 512 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 21, 55, 59 |
| AgeI | ACCGGT | 1 cut(s) | 7 |
| AgsI | TTSAA | 2 cut(s) | 347, 479 |
| AjnI | CCWGG | 1 cut(s) | 240 |
| AluBI | AGCT | 2 cut(s) | 32, 482 |
| AluI | AGCT | 2 cut(s) | 32, 482 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 491 |
| ApoI | RAATTY | 1 cut(s) | 221 |
| AsiGI | ACCGGT | 1 cut(s) | 7 |
| AspS9I | GGNCC | 2 cut(s) | 45, 313 |
| AsuHPI | GGTGA | 2 cut(s) | 158, 380 |
| AvaII | GGWCC | 2 cut(s) | 45, 313 |
| BanI | GGYRCC | 1 cut(s) | 175 |
| BbsI | GAAGAC | 1 cut(s) | 180 |
| BccI | CCATC | 1 cut(s) | 77 |
| BciT130I | CCWGG | 1 cut(s) | 242 |
| BfaI | CTAG | 1 cut(s) | 365 |
| BfmI | CTRYAG | 1 cut(s) | 381 |
| BfuAI | ACCTGC | 1 cut(s) | 425 |
| Bme1390I | CCNGG | 1 cut(s) | 242 |
| Bme18I | GGWCC | 2 cut(s) | 45, 313 |
| BmgT120I | GGNCC | 2 cut(s) | 45, 313 |
| BmiI | GGNNCC | 2 cut(s) | 47, 177 |
| BmrFI | CCNGG | 1 cut(s) | 242 |
| BmsI | GCATC | 1 cut(s) | 490 |
| BpiI | GAAGAC | 1 cut(s) | 180 |
| BpmI | CTGGAG | 1 cut(s) | 468 |
| BsaBI | GATNNNNATC | 1 cut(s) | 519 |
| BsaJI | CCNNGG | 1 cut(s) | 54 |
| BsaWI | WCCGGW | 1 cut(s) | 7 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 21, 55, 59 |
| Bse118I | RCCGGY | 1 cut(s) | 7 |
| Bse1I | ACTGG | 1 cut(s) | 47 |
| Bse8I | GATNNNNATC | 1 cut(s) | 519 |
| BseBI | CCWGG | 1 cut(s) | 242 |
| BseDI | CCNNGG | 1 cut(s) | 54 |
| BseGI | GGATG | 2 cut(s) | 237, 505 |
| BseJI | GATNNNNATC | 1 cut(s) | 519 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 21, 55, 59 |
| BseMII | CTCAG | 1 cut(s) | 195 |
| BseNI | ACTGG | 1 cut(s) | 47 |
| BshNI | GGYRCC | 1 cut(s) | 175 |
| BshTI | ACCGGT | 1 cut(s) | 7 |
| BsiSI | CCGG | 1 cut(s) | 8 |
| BslFI | GGGAC | 1 cut(s) | 31 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 21, 55, 59 |
| BsmFI | GGGAC | 1 cut(s) | 31 |
| Bsp143I | GATC | 1 cut(s) | 234 |
| Bsp19I | CCATGG | 1 cut(s) | 54 |
| BspCNI | CTCAG | 1 cut(s) | 196 |
| BspLI | GGNNCC | 2 cut(s) | 47, 177 |
| BspMI | ACCTGC | 1 cut(s) | 425 |
| BspT107I | GGYRCC | 1 cut(s) | 175 |
| BsrFI | RCCGGY | 1 cut(s) | 7 |
| BsrI | ACTGG | 1 cut(s) | 47 |
| BssAI | RCCGGY | 1 cut(s) | 7 |
| BssECI | CCNNGG | 1 cut(s) | 54 |
| BssMI | GATC | 1 cut(s) | 234 |
| BssT1I | CCWWGG | 1 cut(s) | 54 |
| Bst2UI | CCWGG | 1 cut(s) | 242 |
| Bst4CI | ACNGT | 1 cut(s) | 510 |
| Bst6I | CTCTTC | 1 cut(s) | 303 |
| BstC8I | GCNNGC | 2 cut(s) | 160, 213 |
| BstDEI | CTNAG | 1 cut(s) | 204 |
| BstDSI | CCRYGG | 1 cut(s) | 54 |
| BstEII | GGTNACC | 1 cut(s) | 10 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 19 |
| BstF5I | GGATG | 2 cut(s) | 237, 505 |
| BstKTI | GATC | 1 cut(s) | 237 |
| BstMBI | GATC | 1 cut(s) | 234 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 296 |
| BstNI | CCWGG | 1 cut(s) | 242 |
| BstPI | GGTNACC | 1 cut(s) | 10 |
| BstSCI | CCNGG | 1 cut(s) | 240 |
| BstSFI | CTRYAG | 1 cut(s) | 381 |
| BstV2I | GAAGAC | 1 cut(s) | 180 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 248 |
| BtgI | CCRYGG | 1 cut(s) | 54 |
| BtsCI | GGATG | 2 cut(s) | 237, 505 |
| BveI | ACCTGC | 1 cut(s) | 425 |
| Cac8I | GCNNGC | 2 cut(s) | 160, 213 |
| CaiI | CAGNNNCTG | 1 cut(s) | 491 |
| Cfr10I | RCCGGY | 1 cut(s) | 7 |
| Cfr13I | GGNCC | 2 cut(s) | 45, 313 |
| Csp6I | GTAC | 1 cut(s) | 511 |
| CspAI | ACCGGT | 1 cut(s) | 7 |
| CviAII | CATG | 3 cut(s) | 55, 110, 416 |
| CviJI | RGCY | 5 cut(s) | 32, 162, 290, 299, 482 |
| CviKI_1 | RGCY | 5 cut(s) | 32, 162, 290, 299, 482 |
| CviQI | GTAC | 1 cut(s) | 511 |
| DdeI | CTNAG | 1 cut(s) | 204 |
| DpnI | GATC | 1 cut(s) | 236 |
| DpnII | GATC | 1 cut(s) | 234 |
| Eam1104I | CTCTTC | 1 cut(s) | 303 |
| EarI | CTCTTC | 1 cut(s) | 303 |
| Eco130I | CCWWGG | 1 cut(s) | 54 |
| Eco47I | GGWCC | 2 cut(s) | 45, 313 |
| Eco91I | GGTNACC | 1 cut(s) | 10 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 19 |
| EcoO65I | GGTNACC | 1 cut(s) | 10 |
| EcoRII | CCWGG | 1 cut(s) | 240 |
| EcoT14I | CCWWGG | 1 cut(s) | 54 |
| ErhI | CCWWGG | 1 cut(s) | 54 |
| FaeI | CATG | 3 cut(s) | 58, 113, 419 |
| FaqI | GGGAC | 1 cut(s) | 31 |
| FatI | CATG | 3 cut(s) | 54, 109, 415 |
| FauNDI | CATATG | 1 cut(s) | 462 |
| FokI | GGATG | 2 cut(s) | 224, 512 |
| FspBI | CTAG | 1 cut(s) | 365 |
| GsuI | CTGGAG | 1 cut(s) | 468 |
| HapII | CCGG | 1 cut(s) | 8 |
| Hin1II | CATG | 3 cut(s) | 58, 113, 419 |
| HinfI | GANTC | 3 cut(s) | 449, 488, 529 |
| HpaII | CCGG | 1 cut(s) | 8 |
| HphI | GGTGA | 2 cut(s) | 158, 380 |
| Hpy188I | TCNGA | 1 cut(s) | 454 |
| Hpy188III | TCNNGA | 2 cut(s) | 485, 497 |
| HpyAV | CCTTC | 1 cut(s) | 136 |
| HpyCH4III | ACNGT | 1 cut(s) | 510 |
| HpyCH4IV | ACGT | 1 cut(s) | 78 |
| HpyCH4V | TGCA | 2 cut(s) | 376, 519 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 296 |
| HpyF3I | CTNAG | 1 cut(s) | 204 |
| HpySE526I | ACGT | 1 cut(s) | 78 |
| Hsp92II | CATG | 3 cut(s) | 58, 113, 419 |
| Kzo9I | GATC | 1 cut(s) | 234 |
| LmnI | GCTCC | 1 cut(s) | 487 |
| LpnPI | CCDG | 8 cut(s) | 21, 28, 144, 227, 254, 420, 482, 498 |
| LweI | GCATC | 1 cut(s) | 490 |
| MaeI | CTAG | 1 cut(s) | 365 |
| MaeII | ACGT | 1 cut(s) | 78 |
| MaeIII | GTNAC | 3 cut(s) | 10, 102, 301 |
| MalI | GATC | 1 cut(s) | 236 |
| MboI | GATC | 1 cut(s) | 234 |
| MboII | GAAGA | 5 cut(s) | 90, 180, 318, 320, 359 |
| MluCI | AATT | 2 cut(s) | 221, 371 |
| MlyI | GAGTC | 1 cut(s) | 497 |
| MmeI | TCCRAC | 1 cut(s) | 210 |
| MnlI | CCTC | 6 cut(s) | 15, 60, 107, 116, 280, 304 |
| MseI | TTAA | 6 cut(s) | 74, 219, 269, 294, 354, 535 |
| MslI | CAYNNNNRTG | 1 cut(s) | 461 |
| MspI | CCGG | 1 cut(s) | 8 |
| MspR9I | CCNGG | 1 cut(s) | 242 |
| MvaI | CCWGG | 1 cut(s) | 242 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 296 |
| NcoI | CCATGG | 1 cut(s) | 54 |
| NdeI | CATATG | 1 cut(s) | 462 |
| NdeII | GATC | 1 cut(s) | 234 |
| NlaIII | CATG | 3 cut(s) | 58, 113, 419 |
| NlaIV | GGNNCC | 2 cut(s) | 47, 177 |
| NmuCI | GTSAC | 1 cut(s) | 301 |
| PfeI | GAWTC | 2 cut(s) | 449, 529 |
| PinAI | ACCGGT | 1 cut(s) | 7 |
| PleI | GAGTC | 1 cut(s) | 496 |
| PpsI | GAGTC | 1 cut(s) | 496 |
| Psp1406I | AACGTT | 1 cut(s) | 78 |
| Psp6I | CCWGG | 1 cut(s) | 240 |
| PspEI | GGTNACC | 1 cut(s) | 10 |
| PspGI | CCWGG | 1 cut(s) | 240 |
| PspN4I | GGNNCC | 2 cut(s) | 47, 177 |
| PspPI | GGNCC | 2 cut(s) | 45, 313 |
| PstNI | CAGNNNCTG | 1 cut(s) | 491 |
| RsaI | GTAC | 1 cut(s) | 512 |
| RsaNI | GTAC | 1 cut(s) | 511 |
| RseI | CAYNNNNRTG | 1 cut(s) | 461 |
| SaqAI | TTAA | 6 cut(s) | 74, 219, 269, 294, 354, 535 |
| Sau3AI | GATC | 1 cut(s) | 234 |
| Sau96I | GGNCC | 2 cut(s) | 45, 313 |
| SchI | GAGTC | 1 cut(s) | 497 |
| ScrFI | CCNGG | 1 cut(s) | 242 |
| SetI | ASST | 9 cut(s) | 17, 34, 81, 127, 361, 370, 388, 439, 484 |
| SfaNI | GCATC | 1 cut(s) | 490 |
| SfcI | CTRYAG | 1 cut(s) | 381 |
| SinI | GGWCC | 2 cut(s) | 45, 313 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 461 |
| Sse9I | AATT | 2 cut(s) | 221, 371 |
| SspI | AATATT | 1 cut(s) | 262 |
| SspMI | CTAG | 1 cut(s) | 365 |
| StyD4I | CCNGG | 1 cut(s) | 240 |
| StyI | CCWWGG | 1 cut(s) | 54 |
| TaaI | ACNGT | 1 cut(s) | 510 |
| TaiI | ACGT | 1 cut(s) | 81 |
| TasI | AATT | 2 cut(s) | 221, 371 |
| TfiI | GAWTC | 2 cut(s) | 449, 529 |
| Tru1I | TTAA | 6 cut(s) | 74, 219, 269, 294, 354, 535 |
| Tru9I | TTAA | 6 cut(s) | 74, 219, 269, 294, 354, 535 |
| TseFI | GTSAC | 1 cut(s) | 301 |
| Tsp45I | GTSAC | 1 cut(s) | 301 |
| TspDTI | ATGAA | 2 cut(s) | 380, 449 |
| VpaK11BI | GGWCC | 2 cut(s) | 45, 313 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 19 |
| XapI | RAATTY | 1 cut(s) | 221 |
| XspI | CTAG | 1 cut(s) | 365 |