ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 12 |
| AccII | CGCG | 1 cut(s) | 408 |
| AciI | CCGC | 1 cut(s) | 292 |
| AclWI | GGATC | 2 cut(s) | 292, 687 |
| AcsI | RAATTY | 1 cut(s) | 228 |
| AcuI | CTGAAG | 1 cut(s) | 530 |
| AfaI | GTAC | 1 cut(s) | 280 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 267, 513 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 83, 345 |
| AjnI | CCWGG | 1 cut(s) | 512 |
| Alw26I | GTCTC | 4 cut(s) | 50, 332, 475, 686 |
| AlwI | GGATC | 2 cut(s) | 292, 687 |
| AoxI | GGCC | 1 cut(s) | 69 |
| ApoI | RAATTY | 1 cut(s) | 228 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 543 |
| AspLEI | GCGC | 2 cut(s) | 13, 408 |
| AspS9I | GGNCC | 1 cut(s) | 69 |
| AsuC2I | CCSGG | 1 cut(s) | 262 |
| AsuHPI | GGTGA | 1 cut(s) | 248 |
| AxyI | CCTNAGG | 1 cut(s) | 73 |
| BaeGI | GKGCMC | 1 cut(s) | 262 |
| BccI | CCATC | 1 cut(s) | 569 |
| BciT130I | CCWGG | 1 cut(s) | 514 |
| BcnI | CCSGG | 1 cut(s) | 262 |
| BcoDI | GTCTC | 4 cut(s) | 50, 332, 475, 686 |
| BfaI | CTAG | 2 cut(s) | 284, 431 |
| BfmI | CTRYAG | 1 cut(s) | 636 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 398 |
| BmcAI | AGTACT | 1 cut(s) | 280 |
| Bme1390I | CCNGG | 2 cut(s) | 262, 514 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 83, 345 |
| BmgT120I | GGNCC | 1 cut(s) | 69 |
| BmiI | GGNNCC | 1 cut(s) | 612 |
| BmrFI | CCNGG | 2 cut(s) | 262, 514 |
| BpmI | CTGGAG | 2 cut(s) | 44, 535 |
| BpuMI | CCSGG | 1 cut(s) | 262 |
| BsaI | GGTCTC | 1 cut(s) | 475 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 653, 683 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 267, 513 |
| Bse1I | ACTGG | 1 cut(s) | 346 |
| Bse21I | CCTNAGG | 1 cut(s) | 73 |
| BseBI | CCWGG | 1 cut(s) | 514 |
| BseGI | GGATG | 1 cut(s) | 580 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 267, 513 |
| BseMII | CTCAG | 1 cut(s) | 87 |
| BseNI | ACTGG | 1 cut(s) | 346 |
| BseRI | GAGGAG | 2 cut(s) | 158, 480 |
| BseSI | GKGCMC | 1 cut(s) | 262 |
| Bsh1236I | CGCG | 1 cut(s) | 408 |
| BshFI | GGCC | 1 cut(s) | 71 |
| BsiSI | CCGG | 2 cut(s) | 262, 614 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 267, 513 |
| BsmAI | GTCTC | 4 cut(s) | 50, 332, 475, 686 |
| BsnI | GGCC | 1 cut(s) | 71 |
| Bso31I | GGTCTC | 1 cut(s) | 475 |
| Bsp1286I | GDGCHC | 1 cut(s) | 262 |
| Bsp143I | GATC | 2 cut(s) | 297, 679 |
| BspACI | CCGC | 1 cut(s) | 292 |
| BspANI | GGCC | 1 cut(s) | 71 |
| BspCNI | CTCAG | 1 cut(s) | 86 |
| BspFNI | CGCG | 1 cut(s) | 408 |
| BspLI | GGNNCC | 1 cut(s) | 612 |
| BspPI | GGATC | 2 cut(s) | 292, 687 |
| BspTNI | GGTCTC | 1 cut(s) | 475 |
| BsrI | ACTGG | 1 cut(s) | 346 |
| BssMI | GATC | 2 cut(s) | 297, 679 |
| Bst2UI | CCWGG | 1 cut(s) | 514 |
| Bst6I | CTCTTC | 2 cut(s) | 92, 604 |
| BstC8I | GCNNGC | 3 cut(s) | 15, 31, 410 |
| BstDEI | CTNAG | 1 cut(s) | 73 |
| BstF5I | GGATG | 1 cut(s) | 580 |
| BstFNI | CGCG | 1 cut(s) | 408 |
| BstHHI | GCGC | 2 cut(s) | 13, 408 |
| BstKTI | GATC | 2 cut(s) | 300, 682 |
| BstMAI | GTCTC | 4 cut(s) | 50, 332, 475, 686 |
| BstMBI | GATC | 2 cut(s) | 297, 679 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 389, 398 |
| BstNI | CCWGG | 1 cut(s) | 514 |
| BstNSI | RCATGY | 1 cut(s) | 17 |
| BstSCI | CCNGG | 2 cut(s) | 260, 512 |
| BstSFI | CTRYAG | 1 cut(s) | 636 |
| BstSLI | GKGCMC | 1 cut(s) | 262 |
| BstUI | CGCG | 1 cut(s) | 408 |
| BstX2I | RGATCY | 2 cut(s) | 297, 679 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 649 |
| BstYI | RGATCY | 2 cut(s) | 297, 679 |
| Bsu36I | CCTNAGG | 1 cut(s) | 73 |
| BsuRI | GGCC | 1 cut(s) | 71 |
| BtsCI | GGATG | 1 cut(s) | 580 |
| BtsIMutI | CAGTG | 1 cut(s) | 111 |
| Cac8I | GCNNGC | 3 cut(s) | 15, 31, 410 |
| CfoI | GCGC | 2 cut(s) | 13, 408 |
| Cfr13I | GGNCC | 1 cut(s) | 69 |
| Csp6I | GTAC | 1 cut(s) | 279 |
| CviAII | CATG | 3 cut(s) | 14, 402, 494 |
| CviQI | GTAC | 1 cut(s) | 279 |
| DdeI | CTNAG | 1 cut(s) | 73 |
| DpnI | GATC | 2 cut(s) | 299, 681 |
| DpnII | GATC | 2 cut(s) | 297, 679 |
| DraI | TTTAAA | 1 cut(s) | 217 |
| DriI | GACNNNNNGTC | 2 cut(s) | 83, 345 |
| Eam1104I | CTCTTC | 2 cut(s) | 92, 604 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 83, 345 |
| EarI | CTCTTC | 2 cut(s) | 92, 604 |
| Eco31I | GGTCTC | 1 cut(s) | 475 |
| Eco32I | GATATC | 1 cut(s) | 163 |
| Eco57I | CTGAAG | 1 cut(s) | 530 |
| Eco81I | CCTNAGG | 1 cut(s) | 73 |
| EcoO109I | RGGNCCY | 1 cut(s) | 69 |
| EcoRII | CCWGG | 1 cut(s) | 512 |
| EcoRV | GATATC | 1 cut(s) | 163 |
| FaeI | CATG | 3 cut(s) | 17, 405, 497 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 150, 182 |
| FatI | CATG | 3 cut(s) | 13, 401, 493 |
| FauNDI | CATATG | 1 cut(s) | 61 |
| FokI | GGATG | 1 cut(s) | 587 |
| FspAI | RTGCGCAY | 1 cut(s) | 12 |
| FspBI | CTAG | 2 cut(s) | 284, 431 |
| FspI | TGCGCA | 1 cut(s) | 12 |
| GlaI | GCGC | 2 cut(s) | 12, 407 |
| GsuI | CTGGAG | 2 cut(s) | 44, 535 |
| HaeIII | GGCC | 1 cut(s) | 71 |
| HapII | CCGG | 2 cut(s) | 262, 614 |
| HhaI | GCGC | 2 cut(s) | 13, 408 |
| Hin1II | CATG | 3 cut(s) | 17, 405, 497 |
| Hin6I | GCGC | 2 cut(s) | 11, 406 |
| HinP1I | GCGC | 2 cut(s) | 11, 406 |
| HincII | GTYRAC | 1 cut(s) | 88 |
| HindII | GTYRAC | 1 cut(s) | 88 |
| HinfI | GANTC | 1 cut(s) | 361 |
| HpaII | CCGG | 2 cut(s) | 262, 614 |
| HphI | GGTGA | 1 cut(s) | 248 |
| Hpy166II | GTNNAC | 1 cut(s) | 88 |
| Hpy188I | TCNGA | 1 cut(s) | 366 |
| Hpy188III | TCNNGA | 5 cut(s) | 23, 75, 284, 464, 548 |
| Hpy8I | GTNNAC | 1 cut(s) | 88 |
| Hpy99I | CGWCG | 1 cut(s) | 673 |
| HpyAV | CCTTC | 3 cut(s) | 432, 513, 574 |
| HpyCH4IV | ACGT | 1 cut(s) | 668 |
| HpyCH4V | TGCA | 2 cut(s) | 43, 139 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 389, 398 |
| HpyF3I | CTNAG | 1 cut(s) | 73 |
| HpySE526I | ACGT | 1 cut(s) | 668 |
| Hsp92II | CATG | 3 cut(s) | 17, 405, 497 |
| HspAI | GCGC | 2 cut(s) | 11, 406 |
| Kzo9I | GATC | 2 cut(s) | 297, 679 |
| MaeI | CTAG | 2 cut(s) | 284, 431 |
| MaeII | ACGT | 1 cut(s) | 668 |
| MaeIII | GTNAC | 2 cut(s) | 189, 664 |
| MalI | GATC | 2 cut(s) | 299, 681 |
| MboI | GATC | 2 cut(s) | 297, 679 |
| MboII | GAAGA | 4 cut(s) | 109, 307, 417, 591 |
| MflI | RGATCY | 2 cut(s) | 297, 679 |
| MhlI | GDGCHC | 1 cut(s) | 262 |
| MluCI | AATT | 5 cut(s) | 228, 376, 539, 604, 684 |
| MlyI | GAGTC | 1 cut(s) | 370 |
| MroXI | GAANNNNTTC | 1 cut(s) | 543 |
| MseI | TTAA | 3 cut(s) | 216, 375, 417 |
| MspI | CCGG | 2 cut(s) | 262, 614 |
| MspR9I | CCNGG | 2 cut(s) | 262, 514 |
| MvaI | CCWGG | 1 cut(s) | 514 |
| MvnI | CGCG | 1 cut(s) | 408 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 389, 398 |
| NciI | CCSGG | 1 cut(s) | 262 |
| NdeI | CATATG | 1 cut(s) | 61 |
| NdeII | GATC | 2 cut(s) | 297, 679 |
| NlaIII | CATG | 3 cut(s) | 17, 405, 497 |
| NlaIV | GGNNCC | 1 cut(s) | 612 |
| NsbI | TGCGCA | 1 cut(s) | 12 |
| NspI | RCATGY | 1 cut(s) | 17 |
| PaeI | GCATGC | 1 cut(s) | 17 |
| PdmI | GAANNNNTTC | 1 cut(s) | 543 |
| PfoI | TCCNGGA | 1 cut(s) | 512 |
| PleI | GAGTC | 1 cut(s) | 369 |
| PpsI | GAGTC | 1 cut(s) | 369 |
| Psp6I | CCWGG | 1 cut(s) | 512 |
| PspGI | CCWGG | 1 cut(s) | 512 |
| PspN4I | GGNNCC | 1 cut(s) | 612 |
| PspPI | GGNCC | 1 cut(s) | 69 |
| PsuI | RGATCY | 2 cut(s) | 297, 679 |
| RsaI | GTAC | 1 cut(s) | 280 |
| RsaNI | GTAC | 1 cut(s) | 279 |
| SaqAI | TTAA | 3 cut(s) | 216, 375, 417 |
| Sau3AI | GATC | 2 cut(s) | 297, 679 |
| Sau96I | GGNCC | 1 cut(s) | 69 |
| ScaI | AGTACT | 1 cut(s) | 280 |
| SchI | GAGTC | 1 cut(s) | 370 |
| ScrFI | CCNGG | 2 cut(s) | 262, 514 |
| SduI | GDGCHC | 1 cut(s) | 262 |
| SetI | ASST | 7 cut(s) | 150, 196, 471, 625, 637, 666, 671 |
| SfcI | CTRYAG | 1 cut(s) | 636 |
| SphI | GCATGC | 1 cut(s) | 17 |
| Sse9I | AATT | 5 cut(s) | 228, 376, 539, 604, 684 |
| SsiI | CCGC | 1 cut(s) | 292 |
| SspMI | CTAG | 2 cut(s) | 284, 431 |
| StyD4I | CCNGG | 2 cut(s) | 260, 512 |
| TaiI | ACGT | 1 cut(s) | 671 |
| TaqI | TCGA | 1 cut(s) | 152 |
| TasI | AATT | 5 cut(s) | 228, 376, 539, 604, 684 |
| TatI | WGTACW | 1 cut(s) | 278 |
| Tru1I | TTAA | 3 cut(s) | 216, 375, 417 |
| Tru9I | TTAA | 3 cut(s) | 216, 375, 417 |
| TscAI | CASTG | 1 cut(s) | 111 |
| TspGWI | ACGGA | 1 cut(s) | 383 |
| TspRI | CASTG | 1 cut(s) | 111 |
| XapI | RAATTY | 1 cut(s) | 228 |
| XbaI | TCTAGA | 1 cut(s) | 283 |
| XceI | RCATGY | 1 cut(s) | 17 |
| XmnI | GAANNNNTTC | 1 cut(s) | 543 |
| XspI | CTAG | 2 cut(s) | 284, 431 |
| ZrmI | AGTACT | 1 cut(s) | 280 |