Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 6 - 85 | 1.9e-12 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 270 |
| AciI | CCGC | 1 cut(s) | 8 |
| AclWI | GGATC | 1 cut(s) | 12 |
| AfaI | GTAC | 2 cut(s) | 54, 331 |
| AflIII | ACRYGT | 1 cut(s) | 205 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 90 |
| AjnI | CCWGG | 2 cut(s) | 12, 45 |
| AluBI | AGCT | 4 cut(s) | 221, 245, 254, 312 |
| AluI | AGCT | 4 cut(s) | 221, 245, 254, 312 |
| Alw26I | GTCTC | 3 cut(s) | 77, 125, 196 |
| AlwI | GGATC | 1 cut(s) | 12 |
| AoxI | GGCC | 1 cut(s) | 18 |
| ApeKI | GCWGC | 1 cut(s) | 230 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 194, 227 |
| BamHI | GGATCC | 1 cut(s) | 4 |
| BbvI | GCAGC | 1 cut(s) | 217 |
| BccI | CCATC | 1 cut(s) | 181 |
| BciT130I | CCWGG | 2 cut(s) | 14, 47 |
| BcoDI | GTCTC | 3 cut(s) | 77, 125, 196 |
| BfaI | CTAG | 1 cut(s) | 251 |
| BisI | GCNGC | 1 cut(s) | 231 |
| BlsI | GCNGC | 1 cut(s) | 232 |
| Bme1390I | CCNGG | 2 cut(s) | 14, 47 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 90 |
| BmiI | GGNNCC | 1 cut(s) | 6 |
| BmrFI | CCNGG | 2 cut(s) | 14, 47 |
| BpmI | CTGGAG | 1 cut(s) | 35 |
| Bpu10I | CCTNAGC | 1 cut(s) | 120 |
| BpuEI | CTTGAG | 1 cut(s) | 220 |
| BsaJI | CCNNGG | 4 cut(s) | 12, 21, 45, 141 |
| BseBI | CCWGG | 2 cut(s) | 14, 47 |
| BseDI | CCNNGG | 4 cut(s) | 12, 21, 45, 141 |
| BseGI | GGATG | 2 cut(s) | 137, 186 |
| BseRI | GAGGAG | 1 cut(s) | 143 |
| BseXI | GCAGC | 1 cut(s) | 217 |
| BshFI | GGCC | 1 cut(s) | 20 |
| BslFI | GGGAC | 1 cut(s) | 278 |
| BsmAI | GTCTC | 3 cut(s) | 77, 125, 196 |
| BsmFI | GGGAC | 1 cut(s) | 278 |
| BsnI | GGCC | 1 cut(s) | 20 |
| Bsp143I | GATC | 1 cut(s) | 4 |
| Bsp19I | CCATGG | 1 cut(s) | 21 |
| BspACI | CCGC | 1 cut(s) | 8 |
| BspANI | GGCC | 1 cut(s) | 20 |
| BspLI | GGNNCC | 1 cut(s) | 6 |
| BspPI | GGATC | 1 cut(s) | 12 |
| BssECI | CCNNGG | 4 cut(s) | 12, 21, 45, 141 |
| BssMI | GATC | 1 cut(s) | 4 |
| BssT1I | CCWWGG | 2 cut(s) | 21, 141 |
| Bst2UI | CCWGG | 2 cut(s) | 14, 47 |
| Bst4CI | ACNGT | 1 cut(s) | 57 |
| BstDEI | CTNAG | 1 cut(s) | 120 |
| BstDSI | CCRYGG | 1 cut(s) | 21 |
| BstF5I | GGATG | 2 cut(s) | 137, 186 |
| BstKTI | GATC | 1 cut(s) | 7 |
| BstMAI | GTCTC | 3 cut(s) | 77, 125, 196 |
| BstMBI | GATC | 1 cut(s) | 4 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 116, 227, 251 |
| BstNI | CCWGG | 2 cut(s) | 14, 47 |
| BstNSI | RCATGY | 1 cut(s) | 209 |
| BstSCI | CCNGG | 2 cut(s) | 12, 45 |
| BstV1I | GCAGC | 1 cut(s) | 217 |
| BstX2I | RGATCY | 1 cut(s) | 4 |
| BstYI | RGATCY | 1 cut(s) | 4 |
| BsuRI | GGCC | 1 cut(s) | 20 |
| BtgI | CCRYGG | 1 cut(s) | 21 |
| BtsCI | GGATG | 2 cut(s) | 137, 186 |
| BtsIMutI | CAGTG | 1 cut(s) | 62 |
| Csp6I | GTAC | 2 cut(s) | 53, 330 |
| CviAII | CATG | 3 cut(s) | 22, 206, 279 |
| CviQI | GTAC | 2 cut(s) | 53, 330 |
| DdeI | CTNAG | 1 cut(s) | 120 |
| DpnI | GATC | 1 cut(s) | 6 |
| DpnII | GATC | 1 cut(s) | 4 |
| DriI | GACNNNNNGTC | 1 cut(s) | 90 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 90 |
| Eco130I | CCWWGG | 2 cut(s) | 21, 141 |
| EcoRII | CCWGG | 2 cut(s) | 12, 45 |
| EcoT14I | CCWWGG | 2 cut(s) | 21, 141 |
| ErhI | CCWWGG | 2 cut(s) | 21, 141 |
| FaeI | CATG | 3 cut(s) | 25, 209, 282 |
| FaiI | YATR | 8 cut(s) | 23, 77, 101, 207, 227, 237, 270, 280 |
| FaqI | GGGAC | 1 cut(s) | 278 |
| FatI | CATG | 3 cut(s) | 21, 205, 278 |
| Fnu4HI | GCNGC | 1 cut(s) | 231 |
| FokI | GGATG | 2 cut(s) | 124, 193 |
| Fsp4HI | GCNGC | 1 cut(s) | 231 |
| FspBI | CTAG | 1 cut(s) | 251 |
| GluI | GCNGC | 1 cut(s) | 231 |
| GsuI | CTGGAG | 1 cut(s) | 35 |
| HaeIII | GGCC | 1 cut(s) | 20 |
| Hin1II | CATG | 3 cut(s) | 25, 209, 282 |
| HindIII | AAGCTT | 1 cut(s) | 310 |
| Hpy188I | TCNGA | 1 cut(s) | 96 |
| Hpy188III | TCNNGA | 1 cut(s) | 215 |
| HpyCH4III | ACNGT | 1 cut(s) | 57 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 116, 227, 251 |
| HpyF3I | CTNAG | 1 cut(s) | 120 |
| Hsp92II | CATG | 3 cut(s) | 25, 209, 282 |
| Kzo9I | GATC | 1 cut(s) | 4 |
| LpnPI | CCDG | 4 cut(s) | 26, 32, 59, 312 |
| Lsp1109I | GCAGC | 1 cut(s) | 217 |
| MaeI | CTAG | 1 cut(s) | 251 |
| MalI | GATC | 1 cut(s) | 6 |
| MboI | GATC | 1 cut(s) | 4 |
| MboII | GAAGA | 2 cut(s) | 186, 255 |
| MflI | RGATCY | 1 cut(s) | 4 |
| MluCI | AATT | 1 cut(s) | 238 |
| MnlI | CCTC | 6 cut(s) | 10, 109, 121, 151, 183, 306 |
| MspR9I | CCNGG | 2 cut(s) | 14, 47 |
| MvaI | CCWGG | 2 cut(s) | 14, 47 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 116, 227, 251 |
| NcoI | CCATGG | 1 cut(s) | 21 |
| NdeII | GATC | 1 cut(s) | 4 |
| NlaIII | CATG | 3 cut(s) | 25, 209, 282 |
| NlaIV | GGNNCC | 1 cut(s) | 6 |
| NspI | RCATGY | 1 cut(s) | 209 |
| PciI | ACATGT | 1 cut(s) | 205 |
| PkrI | GCNGC | 1 cut(s) | 232 |
| PscI | ACATGT | 1 cut(s) | 205 |
| PsiI | TTATAA | 1 cut(s) | 270 |
| Psp6I | CCWGG | 2 cut(s) | 12, 45 |
| PspGI | CCWGG | 2 cut(s) | 12, 45 |
| PspN4I | GGNNCC | 1 cut(s) | 6 |
| PsuI | RGATCY | 1 cut(s) | 4 |
| RsaI | GTAC | 2 cut(s) | 54, 331 |
| RsaNI | GTAC | 2 cut(s) | 53, 330 |
| SatI | GCNGC | 1 cut(s) | 231 |
| Sau3AI | GATC | 1 cut(s) | 4 |
| ScrFI | CCNGG | 2 cut(s) | 14, 47 |
| SetI | ASST | 4 cut(s) | 223, 247, 256, 314 |
| SmlI | CTYRAG | 1 cut(s) | 199 |
| SmoI | CTYRAG | 1 cut(s) | 199 |
| Sse9I | AATT | 1 cut(s) | 238 |
| SsiI | CCGC | 1 cut(s) | 8 |
| SspMI | CTAG | 1 cut(s) | 251 |
| StyD4I | CCNGG | 2 cut(s) | 12, 45 |
| StyI | CCWWGG | 2 cut(s) | 21, 141 |
| TaaI | ACNGT | 1 cut(s) | 57 |
| TasI | AATT | 1 cut(s) | 238 |
| TatI | WGTACW | 2 cut(s) | 52, 329 |
| TscAI | CASTG | 1 cut(s) | 62 |
| TseI | GCWGC | 1 cut(s) | 230 |
| TspDTI | ATGAA | 2 cut(s) | 126, 267 |
| TspRI | CASTG | 1 cut(s) | 62 |
| XceI | RCATGY | 1 cut(s) | 209 |
| XspI | CTAG | 1 cut(s) | 251 |