Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1213 |
| AccBSI | CCGCTC | 1 cut(s) | 722 |
| AccI | GTMKAC | 1 cut(s) | 1447 |
| AccIII | TCCGGA | 1 cut(s) | 491 |
| AciI | CCGC | 2 cut(s) | 722, 1223 |
| AcsI | RAATTY | 1 cut(s) | 940 |
| AfaI | GTAC | 1 cut(s) | 1150 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 907 |
| AgsI | TTSAA | 4 cut(s) | 522, 556, 849, 1457 |
| AjnI | CCWGG | 3 cut(s) | 97, 355, 1208 |
| AluBI | AGCT | 8 cut(s) | 31, 343, 596, 933, 962, 971, 1172, 1489 |
| AluI | AGCT | 8 cut(s) | 31, 343, 596, 933, 962, 971, 1172, 1489 |
| Alw21I | GWGCWC | 1 cut(s) | 345 |
| Alw26I | GTCTC | 7 cut(s) | 21, 99, 115, 547, 686, 1360, 1440 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 56 |
| Aor13HI | TCCGGA | 1 cut(s) | 491 |
| ApeKI | GCWGC | 3 cut(s) | 266, 1055, 1514 |
| ApoI | RAATTY | 1 cut(s) | 940 |
| AseI | ATTAAT | 1 cut(s) | 390 |
| AsuHPI | GGTGA | 2 cut(s) | 736, 821 |
| AsuII | TTCGAA | 1 cut(s) | 405 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1140, 1173 |
| BanII | GRGCYC | 1 cut(s) | 345 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1311, 1343 |
| BbsI | GAAGAC | 4 cut(s) | 195, 414, 650, 884 |
| Bbv12I | GWGCWC | 1 cut(s) | 345 |
| BbvI | GCAGC | 3 cut(s) | 253, 1042, 1526 |
| BccI | CCATC | 5 cut(s) | 28, 391, 1000, 1081, 1456 |
| BciT130I | CCWGG | 3 cut(s) | 99, 357, 1210 |
| BciVI | GTATCC | 1 cut(s) | 20 |
| BclI | TGATCA | 2 cut(s) | 427, 1287 |
| BcoDI | GTCTC | 7 cut(s) | 21, 99, 115, 547, 686, 1360, 1440 |
| BfaI | CTAG | 2 cut(s) | 831, 1552 |
| BfmI | CTRYAG | 2 cut(s) | 1263, 1305 |
| BfuAI | ACCTGC | 1 cut(s) | 1213 |
| BfuI | GTATCC | 1 cut(s) | 20 |
| BglII | AGATCT | 1 cut(s) | 1521 |
| BisI | GCNGC | 3 cut(s) | 267, 1056, 1515 |
| BlsI | GCNGC | 3 cut(s) | 268, 1057, 1516 |
| Bme1390I | CCNGG | 3 cut(s) | 99, 357, 1210 |
| BmrFI | CCNGG | 3 cut(s) | 99, 357, 1210 |
| BmsI | GCATC | 2 cut(s) | 443, 497 |
| BpiI | GAAGAC | 4 cut(s) | 195, 414, 650, 884 |
| BpmI | CTGGAG | 3 cut(s) | 81, 311, 1552 |
| Bpu10I | CCTNAGC | 1 cut(s) | 228 |
| Bpu14I | TTCGAA | 1 cut(s) | 405 |
| BpuEI | CTTGAG | 3 cut(s) | 710, 738, 1400 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1526 |
| BsaI | GGTCTC | 2 cut(s) | 21, 1360 |
| BsaWI | WCCGGW | 2 cut(s) | 12, 491 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 907 |
| Bse1I | ACTGG | 2 cut(s) | 61, 167 |
| Bse3DI | GCAATG | 1 cut(s) | 707 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1526 |
| BseAI | TCCGGA | 1 cut(s) | 491 |
| BseBI | CCWGG | 3 cut(s) | 99, 357, 1210 |
| BseGI | GGATG | 4 cut(s) | 43, 178, 488, 1282 |
| BseJI | GATNNNNATC | 1 cut(s) | 1526 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 907 |
| BseMI | GCAATG | 1 cut(s) | 707 |
| BseMII | CTCAG | 6 cut(s) | 126, 242, 282, 358, 561, 1354 |
| BseNI | ACTGG | 2 cut(s) | 61, 167 |
| BseRI | GAGGAG | 1 cut(s) | 41 |
| BseXI | GCAGC | 3 cut(s) | 253, 1042, 1526 |
| BsiHKAI | GWGCWC | 1 cut(s) | 345 |
| BsiSI | CCGG | 2 cut(s) | 13, 492 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 907 |
| BsmAI | GTCTC | 7 cut(s) | 21, 99, 115, 547, 686, 1360, 1440 |
| BsmBI | CGTCTC | 2 cut(s) | 99, 1440 |
| Bso31I | GGTCTC | 2 cut(s) | 21, 1360 |
| Bsp119I | TTCGAA | 1 cut(s) | 405 |
| Bsp1286I | GDGCHC | 1 cut(s) | 345 |
| Bsp13I | TCCGGA | 1 cut(s) | 491 |
| Bsp143I | GATC | 5 cut(s) | 89, 427, 1249, 1287, 1521 |
| BspACI | CCGC | 2 cut(s) | 722, 1223 |
| BspCNI | CTCAG | 6 cut(s) | 125, 241, 283, 357, 562, 1353 |
| BspEI | TCCGGA | 1 cut(s) | 491 |
| BspMI | ACCTGC | 1 cut(s) | 1213 |
| BspQI | GCTCTTC | 1 cut(s) | 478 |
| BspT104I | TTCGAA | 1 cut(s) | 405 |
| BspTNI | GGTCTC | 2 cut(s) | 21, 1360 |
| BsrBI | CCGCTC | 1 cut(s) | 722 |
| BsrDI | GCAATG | 1 cut(s) | 707 |
| BsrI | ACTGG | 2 cut(s) | 61, 167 |
| BssMI | GATC | 5 cut(s) | 89, 427, 1249, 1287, 1521 |
| Bst2UI | CCWGG | 3 cut(s) | 99, 357, 1210 |
| Bst4CI | ACNGT | 3 cut(s) | 109, 498, 1452 |
| Bst6I | CTCTTC | 3 cut(s) | 112, 147, 478 |
| BstBI | TTCGAA | 1 cut(s) | 405 |
| BstDEI | CTNAG | 8 cut(s) | 112, 228, 291, 344, 570, 681, 920, 1340 |
| BstF5I | GGATG | 4 cut(s) | 43, 178, 488, 1282 |
| BstKTI | GATC | 5 cut(s) | 92, 430, 1252, 1290, 1524 |
| BstMAI | GTCTC | 7 cut(s) | 21, 99, 115, 547, 686, 1360, 1440 |
| BstMBI | GATC | 5 cut(s) | 89, 427, 1249, 1287, 1521 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 968 |
| BstNI | CCWGG | 3 cut(s) | 99, 357, 1210 |
| BstSCI | CCNGG | 3 cut(s) | 97, 355, 1208 |
| BstSFI | CTRYAG | 2 cut(s) | 1263, 1305 |
| BstV1I | GCAGC | 3 cut(s) | 253, 1042, 1526 |
| BstV2I | GAAGAC | 4 cut(s) | 195, 414, 650, 884 |
| BstX2I | RGATCY | 1 cut(s) | 1521 |
| BstYI | RGATCY | 1 cut(s) | 1521 |
| BsuI | GTATCC | 1 cut(s) | 20 |
| BtsCI | GGATG | 4 cut(s) | 43, 178, 488, 1282 |
| BtsIMutI | CAGTG | 1 cut(s) | 1161 |
| BveI | ACCTGC | 1 cut(s) | 1213 |
| CaiI | CAGNNNCTG | 1 cut(s) | 56 |
| Csp6I | GTAC | 1 cut(s) | 1149 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 787, 822 |
| CviAII | CATG | 6 cut(s) | 184, 602, 775, 882, 955, 1037 |
| CviQI | GTAC | 1 cut(s) | 1149 |
| DdeI | CTNAG | 8 cut(s) | 112, 228, 291, 344, 570, 681, 920, 1340 |
| DpnI | GATC | 5 cut(s) | 91, 429, 1251, 1289, 1523 |
| DpnII | GATC | 5 cut(s) | 89, 427, 1249, 1287, 1521 |
| Eam1104I | CTCTTC | 3 cut(s) | 112, 147, 478 |
| EarI | CTCTTC | 3 cut(s) | 112, 147, 478 |
| Ecl136II | GAGCTC | 1 cut(s) | 343 |
| Eco24I | GRGCYC | 1 cut(s) | 345 |
| Eco31I | GGTCTC | 2 cut(s) | 21, 1360 |
| Eco53kI | GAGCTC | 1 cut(s) | 343 |
| EcoICRI | GAGCTC | 1 cut(s) | 343 |
| EcoRII | CCWGG | 3 cut(s) | 97, 355, 1208 |
| EcoT38I | GRGCYC | 1 cut(s) | 345 |
| Esp3I | CGTCTC | 2 cut(s) | 99, 1440 |
| FaeI | CATG | 6 cut(s) | 187, 605, 778, 885, 958, 1040 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 62, 94, 659, 691 |
| FatI | CATG | 6 cut(s) | 183, 601, 774, 881, 954, 1036 |
| FbaI | TGATCA | 2 cut(s) | 427, 1287 |
| FblI | GTMKAC | 1 cut(s) | 1447 |
| Fnu4HI | GCNGC | 3 cut(s) | 267, 1056, 1515 |
| FokI | GGATG | 4 cut(s) | 50, 185, 475, 1289 |
| FriOI | GRGCYC | 1 cut(s) | 345 |
| Fsp4HI | GCNGC | 3 cut(s) | 267, 1056, 1515 |
| FspBI | CTAG | 2 cut(s) | 831, 1552 |
| GluI | GCNGC | 3 cut(s) | 267, 1056, 1515 |
| GsuI | CTGGAG | 3 cut(s) | 81, 311, 1552 |
| HapII | CCGG | 2 cut(s) | 13, 492 |
| Hin1II | CATG | 6 cut(s) | 187, 605, 778, 885, 958, 1040 |
| HincII | GTYRAC | 1 cut(s) | 1116 |
| HindII | GTYRAC | 1 cut(s) | 1116 |
| HindIII | AAGCTT | 2 cut(s) | 931, 969 |
| HinfI | GANTC | 4 cut(s) | 259, 374, 868, 1504 |
| HpaII | CCGG | 2 cut(s) | 13, 492 |
| HphI | GGTGA | 2 cut(s) | 736, 821 |
| Hpy166II | GTNNAC | 4 cut(s) | 917, 1116, 1159, 1448 |
| Hpy188I | TCNGA | 8 cut(s) | 52, 292, 347, 547, 571, 929, 1186, 1360 |
| Hpy188III | TCNNGA | 8 cut(s) | 114, 230, 492, 755, 854, 1048, 1501, 1531 |
| Hpy8I | GTNNAC | 4 cut(s) | 917, 1116, 1159, 1448 |
| HpyAV | CCTTC | 7 cut(s) | 302, 550, 580, 774, 970, 1115, 1489 |
| HpyCH4III | ACNGT | 3 cut(s) | 109, 498, 1452 |
| HpyCH4IV | ACGT | 3 cut(s) | 653, 1151, 1433 |
| HpyCH4V | TGCA | 2 cut(s) | 269, 1514 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 968 |
| HpyF3I | CTNAG | 8 cut(s) | 112, 228, 291, 344, 570, 681, 920, 1340 |
| HpySE526I | ACGT | 3 cut(s) | 653, 1151, 1433 |
| Hsp92II | CATG | 6 cut(s) | 187, 605, 778, 885, 958, 1040 |
| Kpn2I | TCCGGA | 1 cut(s) | 491 |
| Ksp22I | TGATCA | 2 cut(s) | 427, 1287 |
| Kzo9I | GATC | 5 cut(s) | 89, 427, 1249, 1287, 1521 |
| LguI | GCTCTTC | 1 cut(s) | 478 |
| LmnI | GCTCC | 5 cut(s) | 28, 330, 340, 385, 719 |
| Lsp1109I | GCAGC | 3 cut(s) | 253, 1042, 1526 |
| LweI | GCATC | 2 cut(s) | 443, 497 |
| MaeI | CTAG | 2 cut(s) | 831, 1552 |
| MaeII | ACGT | 3 cut(s) | 653, 1151, 1433 |
| MaeIII | GTNAC | 5 cut(s) | 196, 283, 896, 982, 1234 |
| MalI | GATC | 5 cut(s) | 91, 429, 1251, 1289, 1523 |
| MbiI | CCGCTC | 1 cut(s) | 722 |
| MboI | GATC | 5 cut(s) | 89, 427, 1249, 1287, 1521 |
| MfeI | CAATTG | 1 cut(s) | 788 |
| MflI | RGATCY | 1 cut(s) | 1521 |
| MhlI | GDGCHC | 1 cut(s) | 345 |
| MlyI | GAGTC | 1 cut(s) | 253 |
| MroI | TCCGGA | 1 cut(s) | 491 |
| MseI | TTAA | 6 cut(s) | 83, 213, 390, 504, 510, 945 |
| MslI | CAYNNNNRTG | 1 cut(s) | 779 |
| MspI | CCGG | 2 cut(s) | 13, 492 |
| MspR9I | CCNGG | 3 cut(s) | 99, 357, 1210 |
| MunI | CAATTG | 1 cut(s) | 788 |
| MvaI | CCWGG | 3 cut(s) | 99, 357, 1210 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 968 |
| NdeII | GATC | 5 cut(s) | 89, 427, 1249, 1287, 1521 |
| NlaIII | CATG | 6 cut(s) | 187, 605, 778, 885, 958, 1040 |
| NmuCI | GTSAC | 1 cut(s) | 283 |
| NspV | TTCGAA | 1 cut(s) | 405 |
| PciSI | GCTCTTC | 1 cut(s) | 478 |
| PfeI | GAWTC | 3 cut(s) | 374, 868, 1504 |
| PfoI | TCCNGGA | 1 cut(s) | 355 |
| PkrI | GCNGC | 3 cut(s) | 268, 1057, 1516 |
| PleI | GAGTC | 1 cut(s) | 253 |
| PpsI | GAGTC | 1 cut(s) | 253 |
| PshBI | ATTAAT | 1 cut(s) | 390 |
| Psp124BI | GAGCTC | 1 cut(s) | 345 |
| Psp6I | CCWGG | 3 cut(s) | 97, 355, 1208 |
| PspGI | CCWGG | 3 cut(s) | 97, 355, 1208 |
| PstNI | CAGNNNCTG | 1 cut(s) | 56 |
| PsuI | RGATCY | 1 cut(s) | 1521 |
| RsaI | GTAC | 1 cut(s) | 1150 |
| RsaNI | GTAC | 1 cut(s) | 1149 |
| RseI | CAYNNNNRTG | 1 cut(s) | 779 |
| SacI | GAGCTC | 1 cut(s) | 345 |
| SapI | GCTCTTC | 1 cut(s) | 478 |
| SaqAI | TTAA | 6 cut(s) | 83, 213, 390, 504, 510, 945 |
| SatI | GCNGC | 3 cut(s) | 267, 1056, 1515 |
| Sau3AI | GATC | 5 cut(s) | 89, 427, 1249, 1287, 1521 |
| SchI | GAGTC | 1 cut(s) | 253 |
| ScrFI | CCNGG | 3 cut(s) | 99, 357, 1210 |
| SduI | GDGCHC | 1 cut(s) | 345 |
| SfaNI | GCATC | 2 cut(s) | 443, 497 |
| SfcI | CTRYAG | 2 cut(s) | 1263, 1305 |
| SfuI | TTCGAA | 1 cut(s) | 405 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 779 |
| SmlI | CTYRAG | 3 cut(s) | 689, 753, 1379 |
| SmoI | CTYRAG | 3 cut(s) | 689, 753, 1379 |
| SsiI | CCGC | 2 cut(s) | 722, 1223 |
| SspMI | CTAG | 2 cut(s) | 831, 1552 |
| SstI | GAGCTC | 1 cut(s) | 345 |
| StyD4I | CCNGG | 3 cut(s) | 97, 355, 1208 |
| TaaI | ACNGT | 3 cut(s) | 109, 498, 1452 |
| TaiI | ACGT | 3 cut(s) | 656, 1154, 1436 |
| TaqI | TCGA | 3 cut(s) | 405, 1009, 1317 |
| TaqII | GACCGA | 1 cut(s) | 940 |
| TfiI | GAWTC | 3 cut(s) | 374, 868, 1504 |
| Tru1I | TTAA | 6 cut(s) | 83, 213, 390, 504, 510, 945 |
| Tru9I | TTAA | 6 cut(s) | 83, 213, 390, 504, 510, 945 |
| TscAI | CASTG | 1 cut(s) | 1161 |
| TseFI | GTSAC | 1 cut(s) | 283 |
| TseI | GCWGC | 3 cut(s) | 266, 1055, 1514 |
| Tsp45I | GTSAC | 1 cut(s) | 283 |
| TspDTI | ATGAA | 3 cut(s) | 165, 468, 860 |
| TspRI | CASTG | 1 cut(s) | 1161 |
| VspI | ATTAAT | 1 cut(s) | 390 |
| XapI | RAATTY | 1 cut(s) | 940 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1080, 1216 |
| XmiI | GTMKAC | 1 cut(s) | 1447 |
| XspI | CTAG | 2 cut(s) | 831, 1552 |