Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 339 |
| AccB1I | GGYRCC | 1 cut(s) | 289 |
| AccBSI | CCGCTC | 1 cut(s) | 996 |
| AcsI | RAATTY | 3 cut(s) | 426, 1159, 1450 |
| AcvI | CACGTG | 2 cut(s) | 31, 929 |
| AcyI | GRCGYC | 2 cut(s) | 290, 336 |
| AfaI | GTAC | 1 cut(s) | 1066 |
| AfeI | AGCGCT | 1 cut(s) | 457 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 56, 365, 790, 1045, 1152 |
| AflII | CTTAAG | 1 cut(s) | 1444 |
| AflIII | ACRYGT | 3 cut(s) | 28, 926, 1283 |
| AgsI | TTSAA | 6 cut(s) | 407, 500, 741, 1164, 1353, 1439 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 703 |
| AjiI | CACGTC | 2 cut(s) | 115, 270 |
| AjnI | CCWGG | 2 cut(s) | 309, 1113 |
| Alw21I | GWGCWC | 5 cut(s) | 21, 138, 621, 934, 1029 |
| Alw26I | GTCTC | 1 cut(s) | 319 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 468 |
| Ama87I | CYCGRG | 2 cut(s) | 663, 701 |
| Aor51HI | AGCGCT | 1 cut(s) | 457 |
| AoxI | GGCC | 7 cut(s) | 58, 214, 648, 1095, 1116, 1182, 1205 |
| ApaI | GGGCCC | 1 cut(s) | 1099 |
| ApeKI | GCWGC | 5 cut(s) | 88, 347, 355, 462, 511 |
| ApoI | RAATTY | 3 cut(s) | 426, 1159, 1450 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 321, 353 |
| AspLEI | GCGC | 6 cut(s) | 88, 292, 458, 837, 1019, 1384 |
| AspS9I | GGNCC | 9 cut(s) | 279, 586, 758, 1095, 1096, 1111, 1117, 1182, 1206 |
| AsuC2I | CCSGG | 2 cut(s) | 623, 1046 |
| AsuHPI | GGTGA | 5 cut(s) | 109, 145, 556, 1028, 1240 |
| AsuNHI | GCTAGC | 1 cut(s) | 76 |
| AvaI | CYCGRG | 2 cut(s) | 663, 701 |
| AvaII | GGWCC | 4 cut(s) | 279, 586, 758, 1111 |
| BaeGI | GKGCMC | 1 cut(s) | 1099 |
| BanI | GGYRCC | 1 cut(s) | 289 |
| BanII | GRGCYC | 2 cut(s) | 21, 1099 |
| BbrPI | CACGTG | 2 cut(s) | 31, 929 |
| BbsI | GAAGAC | 1 cut(s) | 849 |
| Bbv12I | GWGCWC | 5 cut(s) | 21, 138, 621, 934, 1029 |
| BbvI | GCAGC | 5 cut(s) | 100, 342, 359, 474, 498 |
| BccI | CCATC | 3 cut(s) | 212, 556, 1233 |
| BceAI | ACGGC | 2 cut(s) | 229, 303 |
| BciT130I | CCWGG | 2 cut(s) | 311, 1115 |
| BclI | TGATCA | 2 cut(s) | 1311, 1363 |
| BcnI | CCSGG | 2 cut(s) | 623, 1046 |
| BcoDI | GTCTC | 1 cut(s) | 319 |
| BfaI | CTAG | 5 cut(s) | 77, 803, 941, 1214, 1424 |
| BfmI | CTRYAG | 1 cut(s) | 345 |
| BfoI | RGCGCY | 2 cut(s) | 293, 459 |
| BfrI | CTTAAG | 1 cut(s) | 1444 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 105 |
| BisI | GCNGC | 8 cut(s) | 89, 348, 356, 411, 463, 512, 822, 825 |
| BlpI | GCTNAGC | 2 cut(s) | 351, 507 |
| BlsI | GCNGC | 8 cut(s) | 90, 349, 357, 412, 464, 513, 823, 826 |
| Bme1390I | CCNGG | 4 cut(s) | 311, 623, 1046, 1115 |
| Bme18I | GGWCC | 4 cut(s) | 279, 586, 758, 1111 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 703 |
| BmeT110I | CYCGRG | 2 cut(s) | 663, 701 |
| BmgBI | CACGTC | 2 cut(s) | 115, 270 |
| BmgT120I | GGNCC | 9 cut(s) | 279, 586, 758, 1095, 1096, 1111, 1117, 1182, 1206 |
| BmiI | GGNNCC | 5 cut(s) | 291, 587, 1097, 1098, 1208 |
| BmrFI | CCNGG | 4 cut(s) | 311, 623, 1046, 1115 |
| BmsI | GCATC | 3 cut(s) | 117, 310, 492 |
| BmtI | GCTAGC | 1 cut(s) | 80 |
| BpiI | GAAGAC | 1 cut(s) | 849 |
| BpmI | CTGGAG | 2 cut(s) | 5, 1190 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 351, 507 |
| BpuEI | CTTGAG | 1 cut(s) | 295 |
| BpuMI | CCSGG | 2 cut(s) | 623, 1046 |
| BsaAI | YACGTR | 2 cut(s) | 31, 929 |
| BsaHI | GRCGYC | 2 cut(s) | 290, 336 |
| BsaI | GGTCTC | 1 cut(s) | 319 |
| BsaJI | CCNNGG | 3 cut(s) | 81, 847, 1044 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 185, 191, 215, 221 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 56, 365, 790, 1045, 1152 |
| Bse118I | RCCGGY | 1 cut(s) | 104 |
| Bse1I | ACTGG | 4 cut(s) | 389, 631, 672, 1173 |
| Bse3DI | GCAATG | 2 cut(s) | 723, 761 |
| BseBI | CCWGG | 2 cut(s) | 311, 1115 |
| BseDI | CCNNGG | 3 cut(s) | 81, 847, 1044 |
| BseGI | GGATG | 5 cut(s) | 108, 483, 567, 812, 990 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 56, 365, 790, 1045, 1152 |
| BseMI | GCAATG | 2 cut(s) | 723, 761 |
| BseMII | CTCAG | 4 cut(s) | 365, 521, 723, 1011 |
| BseNI | ACTGG | 4 cut(s) | 389, 631, 672, 1173 |
| BseRI | GAGGAG | 2 cut(s) | 431, 764 |
| BseSI | GKGCMC | 1 cut(s) | 1099 |
| BseXI | GCAGC | 5 cut(s) | 100, 342, 359, 474, 498 |
| BseYI | CCCAGC | 1 cut(s) | 49 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1302 |
| BshFI | GGCC | 7 cut(s) | 60, 216, 650, 1097, 1118, 1184, 1207 |
| BshNI | GGYRCC | 1 cut(s) | 289 |
| BsiEI | CGRYCG | 1 cut(s) | 1302 |
| BsiHKAI | GWGCWC | 5 cut(s) | 21, 138, 621, 934, 1029 |
| BsiHKCI | CYCGRG | 2 cut(s) | 663, 701 |
| BsiSI | CCGG | 4 cut(s) | 105, 623, 1046, 1185 |
| BslFI | GGGAC | 3 cut(s) | 599, 958, 1175 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 56, 365, 790, 1045, 1152 |
| BsmAI | GTCTC | 1 cut(s) | 319 |
| BsmFI | GGGAC | 3 cut(s) | 599, 958, 1175 |
| BsmI | GAATGC | 2 cut(s) | 552, 572 |
| BsnI | GGCC | 7 cut(s) | 60, 216, 650, 1097, 1118, 1184, 1207 |
| Bso31I | GGTCTC | 1 cut(s) | 319 |
| BsoBI | CYCGRG | 2 cut(s) | 663, 701 |
| Bsp120I | GGGCCC | 1 cut(s) | 1095 |
| Bsp1286I | GDGCHC | 6 cut(s) | 21, 138, 621, 934, 1029, 1099 |
| Bsp143I | GATC | 4 cut(s) | 1292, 1299, 1311, 1363 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 351, 507 |
| BspANI | GGCC | 7 cut(s) | 60, 216, 650, 1097, 1118, 1184, 1207 |
| BspCNI | CTCAG | 4 cut(s) | 364, 520, 722, 1010 |
| BspLI | GGNNCC | 5 cut(s) | 291, 587, 1097, 1098, 1208 |
| BspMAI | CTGCAG | 1 cut(s) | 349 |
| BspOI | GCTAGC | 1 cut(s) | 80 |
| BspQI | GCTCTTC | 1 cut(s) | 1414 |
| BspT107I | GGYRCC | 1 cut(s) | 289 |
| BspTI | CTTAAG | 1 cut(s) | 1444 |
| BspTNI | GGTCTC | 1 cut(s) | 319 |
| BsrBI | CCGCTC | 1 cut(s) | 996 |
| BsrDI | GCAATG | 2 cut(s) | 723, 761 |
| BsrFI | RCCGGY | 1 cut(s) | 104 |
| BsrI | ACTGG | 4 cut(s) | 389, 631, 672, 1173 |
| BssAI | RCCGGY | 1 cut(s) | 104 |
| BssECI | CCNNGG | 3 cut(s) | 81, 847, 1044 |
| BssMI | GATC | 4 cut(s) | 1292, 1299, 1311, 1363 |
| BssNI | GRCGYC | 2 cut(s) | 290, 336 |
| BssT1I | CCWWGG | 1 cut(s) | 81 |
| Bst2UI | CCWGG | 2 cut(s) | 311, 1115 |
| Bst4CI | ACNGT | 3 cut(s) | 544, 754, 848 |
| Bst6I | CTCTTC | 3 cut(s) | 639, 1101, 1414 |
| BstACI | GRCGYC | 2 cut(s) | 290, 336 |
| BstAFI | CTTAAG | 1 cut(s) | 1444 |
| BstBAI | YACGTR | 2 cut(s) | 31, 929 |
| BstC8I | GCNNGC | 7 cut(s) | 78, 106, 149, 460, 768, 1029, 1205 |
| BstDEI | CTNAG | 4 cut(s) | 351, 507, 709, 997 |
| BstDSI | CCRYGG | 1 cut(s) | 847 |
| BstF5I | GGATG | 5 cut(s) | 108, 483, 567, 812, 990 |
| BstH2I | RGCGCY | 2 cut(s) | 293, 459 |
| BstHHI | GCGC | 6 cut(s) | 88, 292, 458, 837, 1019, 1384 |
| BstKTI | GATC | 4 cut(s) | 1295, 1302, 1314, 1366 |
| BstMAI | GTCTC | 1 cut(s) | 319 |
| BstMBI | GATC | 4 cut(s) | 1292, 1299, 1311, 1363 |
| BstMCI | CGRYCG | 1 cut(s) | 1302 |
| BstNI | CCWGG | 2 cut(s) | 311, 1115 |
| BstNSI | RCATGY | 2 cut(s) | 770, 1287 |
| BstSCI | CCNGG | 4 cut(s) | 309, 621, 1044, 1113 |
| BstSFI | CTRYAG | 1 cut(s) | 345 |
| BstSLI | GKGCMC | 1 cut(s) | 1099 |
| BstV1I | GCAGC | 5 cut(s) | 100, 342, 359, 474, 498 |
| BstV2I | GAAGAC | 1 cut(s) | 849 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 881 |
| BsuRI | GGCC | 7 cut(s) | 60, 216, 650, 1097, 1118, 1184, 1207 |
| BtgI | CCRYGG | 1 cut(s) | 847 |
| BtrI | CACGTC | 2 cut(s) | 115, 270 |
| BtsCI | GGATG | 5 cut(s) | 108, 483, 567, 812, 990 |
| BtsIMutI | CAGTG | 1 cut(s) | 1166 |
| Cac8I | GCNNGC | 7 cut(s) | 78, 106, 149, 460, 768, 1029, 1205 |
| CaiI | CAGNNNCTG | 1 cut(s) | 468 |
| CfoI | GCGC | 6 cut(s) | 88, 292, 458, 837, 1019, 1384 |
| Cfr10I | RCCGGY | 1 cut(s) | 104 |
| Cfr13I | GGNCC | 9 cut(s) | 279, 586, 758, 1095, 1096, 1111, 1117, 1182, 1206 |
| CseI | GACGC | 2 cut(s) | 16, 960 |
| Csp6I | GTAC | 1 cut(s) | 1065 |
| CviAII | CATG | 8 cut(s) | 73, 256, 391, 480, 640, 767, 856, 1284 |
| CviQI | GTAC | 1 cut(s) | 1065 |
| DdeI | CTNAG | 4 cut(s) | 351, 507, 709, 997 |
| DinI | GGCGCC | 1 cut(s) | 291 |
| DpnI | GATC | 4 cut(s) | 1294, 1301, 1313, 1365 |
| DpnII | GATC | 4 cut(s) | 1292, 1299, 1311, 1363 |
| DriI | GACNNNNNGTC | 1 cut(s) | 703 |
| Eam1104I | CTCTTC | 3 cut(s) | 639, 1101, 1414 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 703 |
| EarI | CTCTTC | 3 cut(s) | 639, 1101, 1414 |
| EciI | GGCGGA | 3 cut(s) | 163, 428, 808 |
| Ecl136II | GAGCTC | 1 cut(s) | 19 |
| Eco130I | CCWWGG | 1 cut(s) | 81 |
| Eco24I | GRGCYC | 2 cut(s) | 21, 1099 |
| Eco31I | GGTCTC | 1 cut(s) | 319 |
| Eco47I | GGWCC | 4 cut(s) | 279, 586, 758, 1111 |
| Eco47III | AGCGCT | 1 cut(s) | 457 |
| Eco53kI | GAGCTC | 1 cut(s) | 19 |
| Eco72I | CACGTG | 2 cut(s) | 31, 929 |
| Eco88I | CYCGRG | 2 cut(s) | 663, 701 |
| EcoICRI | GAGCTC | 1 cut(s) | 19 |
| EcoO109I | RGGNCCY | 3 cut(s) | 586, 1096, 1111 |
| EcoRI | GAATTC | 2 cut(s) | 426, 1159 |
| EcoRII | CCWGG | 2 cut(s) | 309, 1113 |
| EcoT14I | CCWWGG | 1 cut(s) | 81 |
| EcoT22I | ATGCAT | 1 cut(s) | 485 |
| EcoT38I | GRGCYC | 2 cut(s) | 21, 1099 |
| EgeI | GGCGCC | 1 cut(s) | 291 |
| EheI | GGCGCC | 1 cut(s) | 291 |
| ErhI | CCWWGG | 1 cut(s) | 81 |
| FaeI | CATG | 8 cut(s) | 76, 259, 394, 483, 643, 770, 859, 1287 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1393, 1425 |
| FaqI | GGGAC | 3 cut(s) | 599, 958, 1175 |
| FatI | CATG | 8 cut(s) | 72, 255, 390, 479, 639, 766, 855, 1283 |
| FauI | CCCGC | 2 cut(s) | 1107, 1145 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FbaI | TGATCA | 2 cut(s) | 1311, 1363 |
| Fnu4HI | GCNGC | 8 cut(s) | 89, 348, 356, 411, 463, 512, 822, 825 |
| FokI | GGATG | 5 cut(s) | 95, 470, 574, 799, 977 |
| FriOI | GRGCYC | 2 cut(s) | 21, 1099 |
| Fsp4HI | GCNGC | 8 cut(s) | 89, 348, 356, 411, 463, 512, 822, 825 |
| FspBI | CTAG | 5 cut(s) | 77, 803, 941, 1214, 1424 |
| GlaI | GCGC | 6 cut(s) | 87, 291, 457, 836, 1018, 1383 |
| GluI | GCNGC | 8 cut(s) | 89, 348, 356, 411, 463, 512, 822, 825 |
| GsaI | CCCAGC | 1 cut(s) | 53 |
| GsuI | CTGGAG | 2 cut(s) | 5, 1190 |
| HaeII | RGCGCY | 2 cut(s) | 293, 459 |
| HaeIII | GGCC | 7 cut(s) | 60, 216, 650, 1097, 1118, 1184, 1207 |
| HapII | CCGG | 4 cut(s) | 105, 623, 1046, 1185 |
| HgaI | GACGC | 2 cut(s) | 16, 960 |
| HhaI | GCGC | 6 cut(s) | 88, 292, 458, 837, 1019, 1384 |
| Hin1I | GRCGYC | 2 cut(s) | 290, 336 |
| Hin1II | CATG | 8 cut(s) | 76, 259, 394, 483, 643, 770, 859, 1287 |
| Hin6I | GCGC | 6 cut(s) | 86, 290, 456, 835, 1017, 1382 |
| HinP1I | GCGC | 6 cut(s) | 86, 290, 456, 835, 1017, 1382 |
| HinfI | GANTC | 5 cut(s) | 180, 476, 704, 869, 1188 |
| HpaII | CCGG | 4 cut(s) | 105, 623, 1046, 1185 |
| HphI | GGTGA | 5 cut(s) | 109, 145, 556, 1028, 1240 |
| Hpy166II | GTNNAC | 1 cut(s) | 793 |
| Hpy188I | TCNGA | 6 cut(s) | 211, 226, 425, 758, 908, 1000 |
| Hpy188III | TCNNGA | 3 cut(s) | 732, 898, 1303 |
| Hpy8I | GTNNAC | 1 cut(s) | 793 |
| Hpy99I | CGWCG | 7 cut(s) | 215, 338, 341, 582, 698, 758, 1300 |
| HpyAV | CCTTC | 7 cut(s) | 55, 130, 451, 576, 700, 1270, 1322 |
| HpyCH4III | ACNGT | 3 cut(s) | 544, 754, 848 |
| HpyCH4IV | ACGT | 5 cut(s) | 30, 114, 269, 336, 928 |
| HpyCH4V | TGCA | 8 cut(s) | 301, 347, 462, 483, 603, 766, 855, 1373 |
| HpyF3I | CTNAG | 4 cut(s) | 351, 507, 709, 997 |
| HpySE526I | ACGT | 5 cut(s) | 30, 114, 269, 336, 928 |
| Hsp92I | GRCGYC | 2 cut(s) | 290, 336 |
| Hsp92II | CATG | 8 cut(s) | 76, 259, 394, 483, 643, 770, 859, 1287 |
| HspAI | GCGC | 6 cut(s) | 86, 290, 456, 835, 1017, 1382 |
| KasI | GGCGCC | 1 cut(s) | 289 |
| KroI | GCCGGC | 1 cut(s) | 104 |
| KroNI | GCCGGC | 1 cut(s) | 106 |
| Ksp22I | TGATCA | 2 cut(s) | 1311, 1363 |
| Kzo9I | GATC | 4 cut(s) | 1292, 1299, 1311, 1363 |
| LguI | GCTCTTC | 1 cut(s) | 1414 |
| LmnI | GCTCC | 3 cut(s) | 16, 24, 242 |
| Lsp1109I | GCAGC | 5 cut(s) | 100, 342, 359, 474, 498 |
| LweI | GCATC | 3 cut(s) | 117, 310, 492 |
| MaeI | CTAG | 5 cut(s) | 77, 803, 941, 1214, 1424 |
| MaeII | ACGT | 5 cut(s) | 30, 114, 269, 336, 928 |
| MaeIII | GTNAC | 4 cut(s) | 115, 265, 473, 1034 |
| MalI | GATC | 4 cut(s) | 1294, 1301, 1313, 1365 |
| MbiI | CCGCTC | 1 cut(s) | 996 |
| MboI | GATC | 4 cut(s) | 1292, 1299, 1311, 1363 |
| MboII | GAAGA | 8 cut(s) | 512, 539, 656, 854, 1118, 1270, 1318, 1401 |
| MfeI | CAATTG | 1 cut(s) | 402 |
| MhlI | GDGCHC | 6 cut(s) | 21, 138, 621, 934, 1029, 1099 |
| Mly113I | GGCGCC | 1 cut(s) | 290 |
| MlyI | GAGTC | 4 cut(s) | 470, 713, 863, 1197 |
| MmeI | TCCRAC | 5 cut(s) | 234, 403, 736, 1035, 1225 |
| Mph1103I | ATGCAT | 1 cut(s) | 485 |
| MroNI | GCCGGC | 1 cut(s) | 104 |
| MseI | TTAA | 4 cut(s) | 684, 963, 1322, 1445 |
| MspA1I | CMGCKG | 2 cut(s) | 355, 511 |
| MspCI | CTTAAG | 1 cut(s) | 1444 |
| MspI | CCGG | 4 cut(s) | 105, 623, 1046, 1185 |
| MspR9I | CCNGG | 4 cut(s) | 311, 623, 1046, 1115 |
| MunI | CAATTG | 1 cut(s) | 402 |
| Mva1269I | GAATGC | 2 cut(s) | 552, 572 |
| MvaI | CCWGG | 2 cut(s) | 311, 1115 |
| NaeI | GCCGGC | 1 cut(s) | 106 |
| NarI | GGCGCC | 1 cut(s) | 290 |
| NciI | CCSGG | 2 cut(s) | 623, 1046 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 4 cut(s) | 1292, 1299, 1311, 1363 |
| NgoMIV | GCCGGC | 1 cut(s) | 104 |
| NheI | GCTAGC | 1 cut(s) | 76 |
| NlaIII | CATG | 8 cut(s) | 76, 259, 394, 483, 643, 770, 859, 1287 |
| NlaIV | GGNNCC | 5 cut(s) | 291, 587, 1097, 1098, 1208 |
| NmuCI | GTSAC | 4 cut(s) | 115, 265, 473, 1034 |
| NsiI | ATGCAT | 1 cut(s) | 485 |
| NspI | RCATGY | 2 cut(s) | 770, 1287 |
| PaeI | GCATGC | 1 cut(s) | 770 |
| PaeR7I | CTCGAG | 2 cut(s) | 663, 701 |
| PciI | ACATGT | 1 cut(s) | 1283 |
| PciSI | GCTCTTC | 1 cut(s) | 1414 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 429, 699 |
| PctI | GAATGC | 2 cut(s) | 552, 572 |
| PdiI | GCCGGC | 1 cut(s) | 106 |
| PfeI | GAWTC | 1 cut(s) | 180 |
| PflFI | GACNNNGTC | 1 cut(s) | 263 |
| PkrI | GCNGC | 8 cut(s) | 90, 349, 357, 412, 464, 513, 823, 826 |
| Ple19I | CGATCG | 1 cut(s) | 1302 |
| PleI | GAGTC | 4 cut(s) | 470, 712, 863, 1196 |
| PluTI | GGCGCC | 1 cut(s) | 293 |
| PmaCI | CACGTG | 2 cut(s) | 31, 929 |
| PmlI | CACGTG | 2 cut(s) | 31, 929 |
| PpsI | GAGTC | 4 cut(s) | 470, 712, 863, 1196 |
| Ppu21I | YACGTR | 2 cut(s) | 31, 929 |
| PpuMI | RGGWCCY | 2 cut(s) | 586, 1111 |
| PscI | ACATGT | 1 cut(s) | 1283 |
| Psp124BI | GAGCTC | 1 cut(s) | 21 |
| Psp5II | RGGWCCY | 2 cut(s) | 586, 1111 |
| Psp6I | CCWGG | 2 cut(s) | 309, 1113 |
| PspCI | CACGTG | 2 cut(s) | 31, 929 |
| PspFI | CCCAGC | 1 cut(s) | 49 |
| PspGI | CCWGG | 2 cut(s) | 309, 1113 |
| PspN4I | GGNNCC | 5 cut(s) | 291, 587, 1097, 1098, 1208 |
| PspOMI | GGGCCC | 1 cut(s) | 1095 |
| PspPI | GGNCC | 9 cut(s) | 279, 586, 758, 1095, 1096, 1111, 1117, 1182, 1206 |
| PspPPI | RGGWCCY | 2 cut(s) | 586, 1111 |
| PspXI | VCTCGAGB | 2 cut(s) | 663, 701 |
| PstI | CTGCAG | 1 cut(s) | 349 |
| PstNI | CAGNNNCTG | 1 cut(s) | 468 |
| PsyI | GACNNNGTC | 1 cut(s) | 263 |
| PvuI | CGATCG | 1 cut(s) | 1302 |
| PvuII | CAGCTG | 2 cut(s) | 355, 511 |
| RsaI | GTAC | 1 cut(s) | 1066 |
| RsaNI | GTAC | 1 cut(s) | 1065 |
| SacI | GAGCTC | 1 cut(s) | 21 |
| SapI | GCTCTTC | 1 cut(s) | 1414 |
| SaqAI | TTAA | 4 cut(s) | 684, 963, 1322, 1445 |
| SatI | GCNGC | 8 cut(s) | 89, 348, 356, 411, 463, 512, 822, 825 |
| Sau3AI | GATC | 4 cut(s) | 1292, 1299, 1311, 1363 |
| Sau96I | GGNCC | 9 cut(s) | 279, 586, 758, 1095, 1096, 1111, 1117, 1182, 1206 |
| SchI | GAGTC | 4 cut(s) | 470, 713, 863, 1197 |
| ScrFI | CCNGG | 4 cut(s) | 311, 623, 1046, 1115 |
| SduI | GDGCHC | 6 cut(s) | 21, 138, 621, 934, 1029, 1099 |
| SfaNI | GCATC | 3 cut(s) | 117, 310, 492 |
| SfcI | CTRYAG | 1 cut(s) | 345 |
| SfoI | GGCGCC | 1 cut(s) | 291 |
| Sfr274I | CTCGAG | 2 cut(s) | 663, 701 |
| SinI | GGWCC | 4 cut(s) | 279, 586, 758, 1111 |
| SlaI | CTCGAG | 2 cut(s) | 663, 701 |
| SmlI | CTYRAG | 4 cut(s) | 274, 663, 701, 1444 |
| SmoI | CTYRAG | 4 cut(s) | 274, 663, 701, 1444 |
| SphI | GCATGC | 1 cut(s) | 770 |
| SspDI | GGCGCC | 1 cut(s) | 289 |
| SspI | AATATT | 1 cut(s) | 745 |
| SspMI | CTAG | 5 cut(s) | 77, 803, 941, 1214, 1424 |
| SstI | GAGCTC | 1 cut(s) | 21 |
| StyD4I | CCNGG | 4 cut(s) | 309, 621, 1044, 1113 |
| StyI | CCWWGG | 1 cut(s) | 81 |
| TaaI | ACNGT | 3 cut(s) | 544, 754, 848 |
| TaiI | ACGT | 5 cut(s) | 33, 117, 272, 339, 931 |
| TaqI | TCGA | 8 cut(s) | 333, 615, 664, 693, 702, 733, 1295, 1302 |
| TauI | GCSGC | 3 cut(s) | 413, 824, 827 |
| TfiI | GAWTC | 1 cut(s) | 180 |
| Tru1I | TTAA | 4 cut(s) | 684, 963, 1322, 1445 |
| Tru9I | TTAA | 4 cut(s) | 684, 963, 1322, 1445 |
| TscAI | CASTG | 1 cut(s) | 1173 |
| TseFI | GTSAC | 4 cut(s) | 115, 265, 473, 1034 |
| TseI | GCWGC | 5 cut(s) | 88, 347, 355, 462, 511 |
| Tsp45I | GTSAC | 4 cut(s) | 115, 265, 473, 1034 |
| TspDTI | ATGAA | 4 cut(s) | 244, 540, 1289, 1401 |
| TspGWI | ACGGA | 3 cut(s) | 395, 969, 1024 |
| TspRI | CASTG | 1 cut(s) | 1173 |
| Tth111I | GACNNNGTC | 1 cut(s) | 263 |
| Vha464I | CTTAAG | 1 cut(s) | 1444 |
| VpaK11BI | GGWCC | 4 cut(s) | 279, 586, 758, 1111 |
| XapI | RAATTY | 3 cut(s) | 426, 1159, 1450 |
| XceI | RCATGY | 2 cut(s) | 770, 1287 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 79, 845, 1200 |
| XhoI | CTCGAG | 2 cut(s) | 663, 701 |
| XspI | CTAG | 5 cut(s) | 77, 803, 941, 1214, 1424 |
| ZraI | GACGTC | 1 cut(s) | 337 |
| Zsp2I | ATGCAT | 1 cut(s) | 485 |