ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ABC2_membrane_3 | PF12698 | 228 - 435 | 4.7e-18 | ABC-2 family transporter protein |
| ABC_tran | PF00005 | 543 - 684 | 4.9e-24 | ABC transporter |
| AAA_21 | PF13304 | 639 - 716 | 1.1e-09 | AAA domain, putative AbiEii toxin, Type IV TA system |
| ABCA11_C | PF25158 | 833 - 887 | 2.4e-29 | ABC transporter A family member 11-like, C-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1238 |
| AatII | GACGTC | 1 cut(s) | 1610 |
| Acc16I | TGCGCA | 1 cut(s) | 433 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1736 |
| AccBSI | CCGCTC | 1 cut(s) | 288 |
| AccI | GTMKAC | 1 cut(s) | 1669 |
| AccII | CGCG | 1 cut(s) | 2426 |
| AclWI | GGATC | 8 cut(s) | 197, 223, 524, 537, 1662, 2012, 2054, 2067 |
| AcoI | YGGCCR | 1 cut(s) | 2791 |
| AcsI | RAATTY | 9 cut(s) | 542, 549, 608, 635, 1762, 2406, 2417, 2450, 2782 |
| AcuI | CTGAAG | 4 cut(s) | 414, 542, 1382, 2243 |
| AcyI | GRCGYC | 1 cut(s) | 1607 |
| AfaI | GTAC | 2 cut(s) | 188, 867 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 652, 1483, 1736, 2051, 2810 |
| AflII | CTTAAG | 1 cut(s) | 758 |
| AflIII | ACRYGT | 1 cut(s) | 2077 |
| AgeI | ACCGGT | 1 cut(s) | 14 |
| AhlI | ACTAGT | 1 cut(s) | 2840 |
| AjnI | CCWGG | 4 cut(s) | 1134, 1216, 1366, 1570 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1506, 1538, 2436, 2468, 2749, 2781 |
| AleI | CACNNNNGTG | 1 cut(s) | 1730 |
| Alw21I | GWGCWC | 2 cut(s) | 2698, 2823 |
| Alw26I | GTCTC | 4 cut(s) | 594, 1113, 2354, 2638 |
| Alw44I | GTGCAC | 1 cut(s) | 2694 |
| AlwI | GGATC | 8 cut(s) | 197, 223, 524, 537, 1662, 2012, 2054, 2067 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 214, 1736 |
| AoxI | GGCC | 9 cut(s) | 153, 350, 481, 659, 787, 981, 1552, 1888, 2791 |
| ApaLI | GTGCAC | 1 cut(s) | 2694 |
| ApeKI | GCWGC | 8 cut(s) | 31, 566, 701, 704, 763, 1590, 1943, 2199 |
| ApoI | RAATTY | 9 cut(s) | 542, 549, 608, 635, 1762, 2406, 2417, 2450, 2782 |
| AseI | ATTAAT | 1 cut(s) | 1245 |
| AsiGI | ACCGGT | 1 cut(s) | 14 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2420 |
| AspA2I | CCTAGG | 1 cut(s) | 302 |
| AspLEI | GCGC | 2 cut(s) | 81, 434 |
| AspS9I | GGNCC | 5 cut(s) | 683, 787, 1214, 1526, 1676 |
| AsuC2I | CCSGG | 4 cut(s) | 345, 359, 389, 2625 |
| AsuHPI | GGTGA | 6 cut(s) | 190, 1602, 1939, 2027, 2174, 2340 |
| AsuII | TTCGAA | 1 cut(s) | 1798 |
| AvaII | GGWCC | 4 cut(s) | 683, 1214, 1526, 1676 |
| AvrII | CCTAGG | 1 cut(s) | 302 |
| BaeGI | GKGCMC | 1 cut(s) | 2698 |
| BamHI | GGATCC | 2 cut(s) | 529, 2059 |
| BanII | GRGCYC | 1 cut(s) | 302 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1355, 1387 |
| BbsI | GAAGAC | 2 cut(s) | 168, 2080 |
| Bbv12I | GWGCWC | 2 cut(s) | 2698, 2823 |
| BbvCI | CCTCAGC | 2 cut(s) | 207, 2544 |
| BbvI | GCAGC | 8 cut(s) | 18, 553, 691, 713, 750, 1577, 1955, 2186 |
| BccI | CCATC | 2 cut(s) | 335, 778 |
| BceAI | ACGGC | 3 cut(s) | 250, 2778, 2827 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2803, 2837 |
| BciT130I | CCWGG | 4 cut(s) | 1136, 1218, 1368, 1572 |
| BciVI | GTATCC | 1 cut(s) | 1364 |
| BclI | TGATCA | 1 cut(s) | 741 |
| BcnI | CCSGG | 4 cut(s) | 345, 359, 389, 2625 |
| BcoDI | GTCTC | 4 cut(s) | 594, 1113, 2354, 2638 |
| BcuI | ACTAGT | 1 cut(s) | 2840 |
| BfaI | CTAG | 9 cut(s) | 303, 585, 1086, 1878, 2036, 2070, 2528, 2607, 2841 |
| BfmI | CTRYAG | 3 cut(s) | 485, 1594, 2364 |
| BfrI | CTTAAG | 1 cut(s) | 758 |
| BfuI | GTATCC | 1 cut(s) | 1364 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 332 |
| BisI | GCNGC | 9 cut(s) | 32, 212, 567, 702, 705, 764, 1591, 1944, 2200 |
| BlnI | CCTAGG | 1 cut(s) | 302 |
| BlsI | GCNGC | 9 cut(s) | 33, 213, 568, 703, 706, 765, 1592, 1945, 2201 |
| BmcAI | AGTACT | 1 cut(s) | 867 |
| Bme1390I | CCNGG | 8 cut(s) | 345, 359, 389, 1136, 1218, 1368, 1572, 2625 |
| Bme18I | GGWCC | 4 cut(s) | 683, 1214, 1526, 1676 |
| BmgT120I | GGNCC | 5 cut(s) | 683, 787, 1214, 1526, 1676 |
| BmiI | GGNNCC | 4 cut(s) | 531, 1678, 2061, 2195 |
| BmrFI | CCNGG | 8 cut(s) | 345, 359, 389, 1136, 1218, 1368, 1572, 2625 |
| BmsI | GCATC | 7 cut(s) | 313, 1731, 1831, 1870, 1910, 1930, 2089 |
| BpiI | GAAGAC | 2 cut(s) | 168, 2080 |
| BpmI | CTGGAG | 5 cut(s) | 86, 1213, 1466, 1758, 1881 |
| Bpu10I | CCTNAGC | 2 cut(s) | 207, 2544 |
| Bpu14I | TTCGAA | 1 cut(s) | 1798 |
| BpuEI | CTTGAG | 2 cut(s) | 1610, 2011 |
| BpuMI | CCSGG | 4 cut(s) | 345, 359, 389, 2625 |
| BsaAI | YACGTR | 1 cut(s) | 1550 |
| BsaHI | GRCGYC | 1 cut(s) | 1607 |
| BsaI | GGTCTC | 2 cut(s) | 594, 1113 |
| BsaJI | CCNNGG | 5 cut(s) | 302, 387, 686, 1134, 1217 |
| BsaWI | WCCGGW | 3 cut(s) | 14, 189, 2166 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1153, 1183, 1731, 1761 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 652, 1483, 1736, 2051, 2810 |
| Bse118I | RCCGGY | 2 cut(s) | 14, 1718 |
| Bse3DI | GCAATG | 4 cut(s) | 657, 675, 780, 2247 |
| BseBI | CCWGG | 4 cut(s) | 1136, 1218, 1368, 1572 |
| BseDI | CCNNGG | 5 cut(s) | 302, 387, 686, 1134, 1217 |
| BseGI | GGATG | 7 cut(s) | 1163, 1228, 1317, 1846, 2104, 2290, 2347 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 652, 1483, 1736, 2051, 2810 |
| BseMI | GCAATG | 4 cut(s) | 657, 675, 780, 2247 |
| BseMII | CTCAG | 8 cut(s) | 179, 185, 221, 516, 864, 1165, 2535, 2631 |
| BseRI | GAGGAG | 5 cut(s) | 56, 59, 98, 1499, 1755 |
| BseSI | GKGCMC | 1 cut(s) | 2698 |
| BseXI | GCAGC | 8 cut(s) | 18, 553, 691, 713, 750, 1577, 1955, 2186 |
| BseYI | CCCAGC | 2 cut(s) | 615, 1688 |
| Bsh1236I | CGCG | 1 cut(s) | 2426 |
| BshFI | GGCC | 9 cut(s) | 155, 352, 483, 661, 789, 983, 1554, 1890, 2793 |
| BshTI | ACCGGT | 1 cut(s) | 14 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2698, 2823 |
| BsiSI | CCGG | 8 cut(s) | 15, 190, 345, 359, 389, 1719, 2167, 2624 |
| BslFI | GGGAC | 2 cut(s) | 2099, 2251 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 652, 1483, 1736, 2051, 2810 |
| BsmAI | GTCTC | 4 cut(s) | 594, 1113, 2354, 2638 |
| BsmFI | GGGAC | 2 cut(s) | 2099, 2251 |
| BsmI | GAATGC | 1 cut(s) | 626 |
| BsnI | GGCC | 9 cut(s) | 155, 352, 483, 661, 789, 983, 1554, 1890, 2793 |
| Bso31I | GGTCTC | 2 cut(s) | 594, 1113 |
| Bsp119I | TTCGAA | 1 cut(s) | 1798 |
| Bsp1286I | GDGCHC | 3 cut(s) | 302, 2698, 2823 |
| BspANI | GGCC | 9 cut(s) | 155, 352, 483, 661, 789, 983, 1554, 1890, 2793 |
| BspCNI | CTCAG | 8 cut(s) | 178, 184, 220, 517, 863, 1164, 2536, 2632 |
| BspFNI | CGCG | 1 cut(s) | 2426 |
| BspLI | GGNNCC | 4 cut(s) | 531, 1678, 2061, 2195 |
| BspMAI | CTGCAG | 1 cut(s) | 489 |
| BspPI | GGATC | 8 cut(s) | 197, 223, 524, 537, 1662, 2012, 2054, 2067 |
| BspQI | GCTCTTC | 1 cut(s) | 1398 |
| BspT104I | TTCGAA | 1 cut(s) | 1798 |
| BspTI | CTTAAG | 1 cut(s) | 758 |
| BspTNI | GGTCTC | 2 cut(s) | 594, 1113 |
| BsrBI | CCGCTC | 1 cut(s) | 288 |
| BsrDI | GCAATG | 4 cut(s) | 657, 675, 780, 2247 |
| BsrFI | RCCGGY | 2 cut(s) | 14, 1718 |
| BssAI | RCCGGY | 2 cut(s) | 14, 1718 |
| BssECI | CCNNGG | 5 cut(s) | 302, 387, 686, 1134, 1217 |
| BssNI | GRCGYC | 1 cut(s) | 1607 |
| BssT1I | CCWWGG | 2 cut(s) | 302, 686 |
| Bst2UI | CCWGG | 4 cut(s) | 1136, 1218, 1368, 1572 |
| Bst4CI | ACNGT | 7 cut(s) | 469, 865, 1015, 1522, 1824, 1970, 2632 |
| Bst6I | CTCTTC | 5 cut(s) | 1398, 1476, 1917, 2352, 2641 |
| BstACI | GRCGYC | 1 cut(s) | 1607 |
| BstAFI | CTTAAG | 1 cut(s) | 758 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 647 |
| BstBAI | YACGTR | 1 cut(s) | 1550 |
| BstBI | TTCGAA | 1 cut(s) | 1798 |
| BstC8I | GCNNGC | 4 cut(s) | 485, 822, 1056, 2520 |
| BstEII | GGTNACC | 1 cut(s) | 2162 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1481 |
| BstF5I | GGATG | 7 cut(s) | 1163, 1228, 1317, 1846, 2104, 2290, 2347 |
| BstFNI | CGCG | 1 cut(s) | 2426 |
| BstHHI | GCGC | 2 cut(s) | 81, 434 |
| BstMAI | GTCTC | 4 cut(s) | 594, 1113, 2354, 2638 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 31, 161, 220, 332, 647, 1596, 1782, 2519, 2524 |
| BstNI | CCWGG | 4 cut(s) | 1136, 1218, 1368, 1572 |
| BstNSI | RCATGY | 1 cut(s) | 2081 |
| BstPI | GGTNACC | 1 cut(s) | 2162 |
| BstSCI | CCNGG | 8 cut(s) | 343, 357, 387, 1134, 1216, 1366, 1570, 2623 |
| BstSFI | CTRYAG | 3 cut(s) | 485, 1594, 2364 |
| BstSLI | GKGCMC | 1 cut(s) | 2698 |
| BstUI | CGCG | 1 cut(s) | 2426 |
| BstV1I | GCAGC | 8 cut(s) | 18, 553, 691, 713, 750, 1577, 1955, 2186 |
| BstV2I | GAAGAC | 2 cut(s) | 168, 2080 |
| BstX2I | RGATCY | 2 cut(s) | 529, 2059 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1374 |
| BstYI | RGATCY | 2 cut(s) | 529, 2059 |
| BsuI | GTATCC | 1 cut(s) | 1364 |
| BsuRI | GGCC | 9 cut(s) | 155, 352, 483, 661, 789, 983, 1554, 1890, 2793 |
| BtsCI | GGATG | 7 cut(s) | 1163, 1228, 1317, 1846, 2104, 2290, 2347 |
| BtsI | GCAGTG | 1 cut(s) | 180 |
| BtsIMutI | CAGTG | 8 cut(s) | 8, 180, 465, 1159, 1442, 1737, 1916, 1975 |
| Cac8I | GCNNGC | 4 cut(s) | 485, 822, 1056, 2520 |
| CaiI | CAGNNNCTG | 2 cut(s) | 214, 1736 |
| CfoI | GCGC | 2 cut(s) | 81, 434 |
| Cfr10I | RCCGGY | 2 cut(s) | 14, 1718 |
| Cfr13I | GGNCC | 5 cut(s) | 683, 787, 1214, 1526, 1676 |
| CseI | GACGC | 3 cut(s) | 170, 184, 1973 |
| Csp6I | GTAC | 2 cut(s) | 187, 866 |
| CspAI | ACCGGT | 1 cut(s) | 14 |
| CviQI | GTAC | 2 cut(s) | 187, 866 |
| DraI | TTTAAA | 1 cut(s) | 2329 |
| EaeI | YGGCCR | 1 cut(s) | 2791 |
| Eam1104I | CTCTTC | 5 cut(s) | 1398, 1476, 1917, 2352, 2641 |
| EarI | CTCTTC | 5 cut(s) | 1398, 1476, 1917, 2352, 2641 |
| Eco130I | CCWWGG | 2 cut(s) | 302, 686 |
| Eco147I | AGGCCT | 3 cut(s) | 155, 661, 1890 |
| Eco24I | GRGCYC | 1 cut(s) | 302 |
| Eco31I | GGTCTC | 2 cut(s) | 594, 1113 |
| Eco47I | GGWCC | 4 cut(s) | 683, 1214, 1526, 1676 |
| Eco57I | CTGAAG | 4 cut(s) | 414, 542, 1382, 2243 |
| Eco91I | GGTNACC | 1 cut(s) | 2162 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1481 |
| EcoO65I | GGTNACC | 1 cut(s) | 2162 |
| EcoRII | CCWGG | 4 cut(s) | 1134, 1216, 1366, 1570 |
| EcoT14I | CCWWGG | 2 cut(s) | 302, 686 |
| EcoT22I | ATGCAT | 1 cut(s) | 1846 |
| EcoT38I | GRGCYC | 1 cut(s) | 302 |
| ErhI | CCWWGG | 2 cut(s) | 302, 686 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 1085, 1117, 1461, 1493, 1848, 1880, 1973, 2005 |
| FaqI | GGGAC | 2 cut(s) | 2099, 2251 |
| FauI | CCCGC | 2 cut(s) | 240, 2511 |
| FbaI | TGATCA | 1 cut(s) | 741 |
| FblI | GTMKAC | 1 cut(s) | 1669 |
| Fnu4HI | GCNGC | 9 cut(s) | 32, 212, 567, 702, 705, 764, 1591, 1944, 2200 |
| FokI | GGATG | 7 cut(s) | 1150, 1235, 1304, 1853, 2111, 2297, 2354 |
| FriOI | GRGCYC | 1 cut(s) | 302 |
| Fsp4HI | GCNGC | 9 cut(s) | 32, 212, 567, 702, 705, 764, 1591, 1944, 2200 |
| FspBI | CTAG | 9 cut(s) | 303, 585, 1086, 1878, 2036, 2070, 2528, 2607, 2841 |
| FspI | TGCGCA | 1 cut(s) | 433 |
| GlaI | GCGC | 2 cut(s) | 80, 433 |
| GluI | GCNGC | 9 cut(s) | 32, 212, 567, 702, 705, 764, 1591, 1944, 2200 |
| GsaI | CCCAGC | 2 cut(s) | 619, 1692 |
| GsuI | CTGGAG | 5 cut(s) | 86, 1213, 1466, 1758, 1881 |
| HaeIII | GGCC | 9 cut(s) | 155, 352, 483, 661, 789, 983, 1554, 1890, 2793 |
| HapII | CCGG | 8 cut(s) | 15, 190, 345, 359, 389, 1719, 2167, 2624 |
| HgaI | GACGC | 3 cut(s) | 170, 184, 1973 |
| HhaI | GCGC | 2 cut(s) | 81, 434 |
| Hin1I | GRCGYC | 1 cut(s) | 1607 |
| Hin6I | GCGC | 2 cut(s) | 79, 432 |
| HinP1I | GCGC | 2 cut(s) | 79, 432 |
| HincII | GTYRAC | 1 cut(s) | 1642 |
| HindII | GTYRAC | 1 cut(s) | 1642 |
| HpaII | CCGG | 8 cut(s) | 15, 190, 345, 359, 389, 1719, 2167, 2624 |
| HphI | GGTGA | 6 cut(s) | 190, 1602, 1939, 2027, 2174, 2340 |
| Hpy166II | GTNNAC | 6 cut(s) | 1433, 1642, 1670, 1820, 2696, 2809 |
| Hpy188III | TCNNGA | 9 cut(s) | 148, 2070, 2125, 2229, 2306, 2399, 2435, 2441, 2489 |
| Hpy8I | GTNNAC | 6 cut(s) | 1433, 1642, 1670, 1820, 2696, 2809 |
| Hpy99I | CGWCG | 2 cut(s) | 164, 1989 |
| HpyAV | CCTTC | 8 cut(s) | 145, 342, 672, 994, 1194, 1508, 1901, 2775 |
| HpyCH4III | ACNGT | 7 cut(s) | 469, 865, 1015, 1522, 1824, 1970, 2632 |
| HpyCH4IV | ACGT | 2 cut(s) | 1549, 1607 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 31, 161, 220, 332, 647, 1596, 1782, 2519, 2524 |
| HpySE526I | ACGT | 2 cut(s) | 1549, 1607 |
| Hsp92I | GRCGYC | 1 cut(s) | 1607 |
| HspAI | GCGC | 2 cut(s) | 79, 432 |
| Ksp22I | TGATCA | 1 cut(s) | 741 |
| LguI | GCTCTTC | 1 cut(s) | 1398 |
| Lsp1109I | GCAGC | 8 cut(s) | 18, 553, 691, 713, 750, 1577, 1955, 2186 |
| LweI | GCATC | 7 cut(s) | 313, 1731, 1831, 1870, 1910, 1930, 2089 |
| MaeI | CTAG | 9 cut(s) | 303, 585, 1086, 1878, 2036, 2070, 2528, 2607, 2841 |
| MaeII | ACGT | 2 cut(s) | 1549, 1607 |
| MaeIII | GTNAC | 8 cut(s) | 196, 1608, 1732, 1914, 1964, 2162, 2226, 2557 |
| MbiI | CCGCTC | 1 cut(s) | 288 |
| MflI | RGATCY | 2 cut(s) | 529, 2059 |
| MhlI | GDGCHC | 3 cut(s) | 302, 2698, 2823 |
| MlyI | GAGTC | 2 cut(s) | 163, 2819 |
| MmeI | TCCRAC | 2 cut(s) | 970, 2853 |
| Mph1103I | ATGCAT | 1 cut(s) | 1846 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2420 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1730, 2718 |
| MspA1I | CMGCKG | 5 cut(s) | 214, 704, 1054, 2199, 2543 |
| MspCI | CTTAAG | 1 cut(s) | 758 |
| MspI | CCGG | 8 cut(s) | 15, 190, 345, 359, 389, 1719, 2167, 2624 |
| MspR9I | CCNGG | 8 cut(s) | 345, 359, 389, 1136, 1218, 1368, 1572, 2625 |
| Mva1269I | GAATGC | 1 cut(s) | 626 |
| MvaI | CCWGG | 4 cut(s) | 1136, 1218, 1368, 1572 |
| MvnI | CGCG | 1 cut(s) | 2426 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 31, 161, 220, 332, 647, 1596, 1782, 2519, 2524 |
| NciI | CCSGG | 4 cut(s) | 345, 359, 389, 2625 |
| NlaIV | GGNNCC | 4 cut(s) | 531, 1678, 2061, 2195 |
| NmuCI | GTSAC | 6 cut(s) | 196, 1608, 1732, 1914, 2162, 2226 |
| NsbI | TGCGCA | 1 cut(s) | 433 |
| NsiI | ATGCAT | 1 cut(s) | 1846 |
| NspI | RCATGY | 1 cut(s) | 2081 |
| NspV | TTCGAA | 1 cut(s) | 1798 |
| OliI | CACNNNNGTG | 1 cut(s) | 1730 |
| PceI | AGGCCT | 3 cut(s) | 155, 661, 1890 |
| PciI | ACATGT | 1 cut(s) | 2077 |
| PciSI | GCTCTTC | 1 cut(s) | 1398 |
| PctI | GAATGC | 1 cut(s) | 626 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2420 |
| PfeI | GAWTC | 9 cut(s) | 307, 418, 602, 2262, 2386, 2593, 2620, 2644, 2687 |
| PflFI | GACNNNGTC | 1 cut(s) | 172 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1736 |
| PfoI | TCCNGGA | 2 cut(s) | 343, 2623 |
| PinAI | ACCGGT | 1 cut(s) | 14 |
| PkrI | GCNGC | 9 cut(s) | 33, 213, 568, 703, 706, 765, 1592, 1945, 2201 |
| PleI | GAGTC | 2 cut(s) | 163, 2819 |
| PpsI | GAGTC | 2 cut(s) | 163, 2819 |
| Ppu21I | YACGTR | 1 cut(s) | 1550 |
| PscI | ACATGT | 1 cut(s) | 2077 |
| PshBI | ATTAAT | 1 cut(s) | 1245 |
| PsiI | TTATAA | 1 cut(s) | 1238 |
| Psp6I | CCWGG | 4 cut(s) | 1134, 1216, 1366, 1570 |
| PspEI | GGTNACC | 1 cut(s) | 2162 |
| PspFI | CCCAGC | 2 cut(s) | 615, 1688 |
| PspGI | CCWGG | 4 cut(s) | 1134, 1216, 1366, 1570 |
| PspN4I | GGNNCC | 4 cut(s) | 531, 1678, 2061, 2195 |
| PspPI | GGNCC | 5 cut(s) | 683, 787, 1214, 1526, 1676 |
| PstI | CTGCAG | 1 cut(s) | 489 |
| PstNI | CAGNNNCTG | 2 cut(s) | 214, 1736 |
| PsuI | RGATCY | 2 cut(s) | 529, 2059 |
| PsyI | GACNNNGTC | 1 cut(s) | 172 |
| PvuII | CAGCTG | 3 cut(s) | 704, 1054, 2543 |
| RsaI | GTAC | 2 cut(s) | 188, 867 |
| RsaNI | GTAC | 2 cut(s) | 187, 866 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1730, 2718 |
| SapI | GCTCTTC | 1 cut(s) | 1398 |
| SatI | GCNGC | 9 cut(s) | 32, 212, 567, 702, 705, 764, 1591, 1944, 2200 |
| Sau96I | GGNCC | 5 cut(s) | 683, 787, 1214, 1526, 1676 |
| ScaI | AGTACT | 1 cut(s) | 867 |
| SchI | GAGTC | 2 cut(s) | 163, 2819 |
| ScrFI | CCNGG | 8 cut(s) | 345, 359, 389, 1136, 1218, 1368, 1572, 2625 |
| SduI | GDGCHC | 3 cut(s) | 302, 2698, 2823 |
| SfaNI | GCATC | 7 cut(s) | 313, 1731, 1831, 1870, 1910, 1930, 2089 |
| SfcI | CTRYAG | 3 cut(s) | 485, 1594, 2364 |
| SfuI | TTCGAA | 1 cut(s) | 1798 |
| SinI | GGWCC | 4 cut(s) | 683, 1214, 1526, 1676 |
| SmiI | ATTTAAAT | 1 cut(s) | 2329 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1730, 2718 |
| SmlI | CTYRAG | 3 cut(s) | 758, 1625, 1990 |
| SmoI | CTYRAG | 3 cut(s) | 758, 1625, 1990 |
| SpeI | ACTAGT | 1 cut(s) | 2840 |
| SseBI | AGGCCT | 3 cut(s) | 155, 661, 1890 |
| SspI | AATATT | 1 cut(s) | 2743 |
| SspMI | CTAG | 9 cut(s) | 303, 585, 1086, 1878, 2036, 2070, 2528, 2607, 2841 |
| StuI | AGGCCT | 3 cut(s) | 155, 661, 1890 |
| StyD4I | CCNGG | 8 cut(s) | 343, 357, 387, 1134, 1216, 1366, 1570, 2623 |
| StyI | CCWWGG | 2 cut(s) | 302, 686 |
| SwaI | ATTTAAAT | 1 cut(s) | 2329 |
| TaaI | ACNGT | 7 cut(s) | 469, 865, 1015, 1522, 1824, 1970, 2632 |
| TaiI | ACGT | 2 cut(s) | 1552, 1610 |
| TaqI | TCGA | 5 cut(s) | 321, 1308, 1798, 2398, 2823 |
| TaqII | GACCGA | 1 cut(s) | 2840 |
| TatI | WGTACW | 1 cut(s) | 865 |
| TauI | GCSGC | 1 cut(s) | 214 |
| TfiI | GAWTC | 9 cut(s) | 307, 418, 602, 2262, 2386, 2593, 2620, 2644, 2687 |
| TscAI | CASTG | 8 cut(s) | 15, 187, 472, 1159, 1449, 1737, 1923, 1975 |
| TseFI | GTSAC | 6 cut(s) | 196, 1608, 1732, 1914, 2162, 2226 |
| TseI | GCWGC | 8 cut(s) | 31, 566, 701, 704, 763, 1590, 1943, 2199 |
| Tsp45I | GTSAC | 6 cut(s) | 196, 1608, 1732, 1914, 2162, 2226 |
| TspRI | CASTG | 8 cut(s) | 15, 187, 472, 1159, 1449, 1737, 1923, 1975 |
| Tth111I | GACNNNGTC | 1 cut(s) | 172 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1736 |
| Vha464I | CTTAAG | 1 cut(s) | 758 |
| VneI | GTGCAC | 1 cut(s) | 2694 |
| VpaK11BI | GGWCC | 4 cut(s) | 683, 1214, 1526, 1676 |
| VspI | ATTAAT | 1 cut(s) | 1245 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1481 |
| XapI | RAATTY | 9 cut(s) | 542, 549, 608, 635, 1762, 2406, 2417, 2450, 2782 |
| XbaI | TCTAGA | 1 cut(s) | 2069 |
| XceI | RCATGY | 1 cut(s) | 2081 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2137, 2786 |
| XmaJI | CCTAGG | 1 cut(s) | 302 |
| XmiI | GTMKAC | 1 cut(s) | 1669 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2420 |
| XspI | CTAG | 9 cut(s) | 303, 585, 1086, 1878, 2036, 2070, 2528, 2607, 2841 |
| ZraI | GACGTC | 1 cut(s) | 1608 |
| ZrmI | AGTACT | 1 cut(s) | 867 |
| Zsp2I | ATGCAT | 1 cut(s) | 1846 |