ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 330 |
| AccB1I | GGYRCC | 1 cut(s) | 90 |
| AccI | GTMKAC | 1 cut(s) | 334 |
| AciI | CCGC | 1 cut(s) | 586 |
| AclWI | GGATC | 1 cut(s) | 497 |
| AdeI | CACNNNGTG | 1 cut(s) | 515 |
| AfaI | GTAC | 4 cut(s) | 43, 49, 179, 539 |
| AflIII | ACRYGT | 1 cut(s) | 607 |
| AgsI | TTSAA | 4 cut(s) | 107, 454, 605, 705 |
| AhlI | ACTAGT | 1 cut(s) | 44 |
| AjiI | CACGTC | 1 cut(s) | 218 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 632, 664 |
| AluBI | AGCT | 6 cut(s) | 10, 29, 100, 283, 579, 601 |
| AluI | AGCT | 6 cut(s) | 10, 29, 100, 283, 579, 601 |
| Alw21I | GWGCWC | 1 cut(s) | 102 |
| Alw26I | GTCTC | 3 cut(s) | 224, 296, 371 |
| AlwI | GGATC | 1 cut(s) | 497 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 180 |
| AsuHPI | GGTGA | 1 cut(s) | 286 |
| BanI | GGYRCC | 1 cut(s) | 90 |
| BanII | GRGCYC | 1 cut(s) | 102 |
| Bbv12I | GWGCWC | 1 cut(s) | 102 |
| BccI | CCATC | 2 cut(s) | 106, 389 |
| BcoDI | GTCTC | 3 cut(s) | 224, 296, 371 |
| BcuI | ACTAGT | 1 cut(s) | 44 |
| BfaI | CTAG | 2 cut(s) | 45, 555 |
| BisI | GCNGC | 1 cut(s) | 587 |
| BlsI | GCNGC | 1 cut(s) | 588 |
| BmgBI | CACGTC | 1 cut(s) | 218 |
| BmiI | GGNNCC | 1 cut(s) | 92 |
| BmsI | GCATC | 2 cut(s) | 336, 515 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 184, 216 |
| BpmI | CTGGAG | 1 cut(s) | 551 |
| BpuEI | CTTGAG | 3 cut(s) | 206, 464, 601 |
| BsaJI | CCNNGG | 2 cut(s) | 85, 122 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 126, 156 |
| Bse1I | ACTGG | 1 cut(s) | 288 |
| Bse3DI | GCAATG | 1 cut(s) | 501 |
| BseDI | CCNNGG | 2 cut(s) | 85, 122 |
| BseGI | GGATG | 3 cut(s) | 81, 117, 351 |
| BseMI | GCAATG | 1 cut(s) | 501 |
| BseMII | CTCAG | 4 cut(s) | 21, 187, 293, 588 |
| BseNI | ACTGG | 1 cut(s) | 288 |
| BshNI | GGYRCC | 1 cut(s) | 90 |
| BsiHKAI | GWGCWC | 1 cut(s) | 102 |
| BslFI | GGGAC | 3 cut(s) | 168, 336, 670 |
| BsmAI | GTCTC | 3 cut(s) | 224, 296, 371 |
| BsmBI | CGTCTC | 1 cut(s) | 224 |
| BsmFI | GGGAC | 3 cut(s) | 168, 336, 670 |
| Bsp1286I | GDGCHC | 1 cut(s) | 102 |
| Bsp143I | GATC | 2 cut(s) | 310, 489 |
| BspACI | CCGC | 1 cut(s) | 586 |
| BspCNI | CTCAG | 4 cut(s) | 22, 186, 292, 589 |
| BspLI | GGNNCC | 1 cut(s) | 92 |
| BspPI | GGATC | 1 cut(s) | 497 |
| BspT107I | GGYRCC | 1 cut(s) | 90 |
| BsrDI | GCAATG | 1 cut(s) | 501 |
| BsrI | ACTGG | 1 cut(s) | 288 |
| BssECI | CCNNGG | 2 cut(s) | 85, 122 |
| BssMI | GATC | 2 cut(s) | 310, 489 |
| BssT1I | CCWWGG | 1 cut(s) | 85 |
| Bst4CI | ACNGT | 2 cut(s) | 182, 724 |
| Bst6I | CTCTTC | 1 cut(s) | 156 |
| BstDEI | CTNAG | 4 cut(s) | 30, 173, 279, 597 |
| BstF5I | GGATG | 3 cut(s) | 81, 117, 351 |
| BstKTI | GATC | 2 cut(s) | 313, 492 |
| BstMAI | GTCTC | 3 cut(s) | 224, 296, 371 |
| BstMBI | GATC | 2 cut(s) | 310, 489 |
| BstNSI | RCATGY | 1 cut(s) | 611 |
| BtrI | CACGTC | 1 cut(s) | 218 |
| BtsCI | GGATG | 3 cut(s) | 81, 117, 351 |
| BtsIMutI | CAGTG | 1 cut(s) | 65 |
| CaiI | CAGNNNCTG | 1 cut(s) | 180 |
| Csp6I | GTAC | 4 cut(s) | 42, 48, 178, 538 |
| CviAII | CATG | 2 cut(s) | 314, 608 |
| CviJI | RGCY | 9 cut(s) | 10, 29, 100, 283, 553, 579, 601, 718, 735 |
| CviKI_1 | RGCY | 9 cut(s) | 10, 29, 100, 283, 553, 579, 601, 718, 735 |
| CviQI | GTAC | 4 cut(s) | 42, 48, 178, 538 |
| DdeI | CTNAG | 4 cut(s) | 30, 173, 279, 597 |
| DpnI | GATC | 2 cut(s) | 312, 491 |
| DpnII | GATC | 2 cut(s) | 310, 489 |
| DraIII | CACNNNGTG | 1 cut(s) | 515 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 330 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 330 |
| Eam1104I | CTCTTC | 1 cut(s) | 156 |
| EarI | CTCTTC | 1 cut(s) | 156 |
| Ecl136II | GAGCTC | 1 cut(s) | 100 |
| Eco130I | CCWWGG | 1 cut(s) | 85 |
| Eco24I | GRGCYC | 1 cut(s) | 102 |
| Eco32I | GATATC | 1 cut(s) | 129 |
| Eco53kI | GAGCTC | 1 cut(s) | 100 |
| EcoICRI | GAGCTC | 1 cut(s) | 100 |
| EcoRV | GATATC | 1 cut(s) | 129 |
| EcoT14I | CCWWGG | 1 cut(s) | 85 |
| EcoT38I | GRGCYC | 1 cut(s) | 102 |
| ErhI | CCWWGG | 1 cut(s) | 85 |
| Esp3I | CGTCTC | 1 cut(s) | 224 |
| FaeI | CATG | 2 cut(s) | 317, 611 |
| FaqI | GGGAC | 3 cut(s) | 168, 336, 670 |
| FatI | CATG | 2 cut(s) | 313, 607 |
| FblI | GTMKAC | 1 cut(s) | 334 |
| Fnu4HI | GCNGC | 1 cut(s) | 587 |
| FokI | GGATG | 3 cut(s) | 68, 124, 358 |
| FriOI | GRGCYC | 1 cut(s) | 102 |
| Fsp4HI | GCNGC | 1 cut(s) | 587 |
| FspBI | CTAG | 2 cut(s) | 45, 555 |
| GluI | GCNGC | 1 cut(s) | 587 |
| GsuI | CTGGAG | 1 cut(s) | 551 |
| Hin1II | CATG | 2 cut(s) | 317, 611 |
| HincII | GTYRAC | 1 cut(s) | 402 |
| HindII | GTYRAC | 1 cut(s) | 402 |
| HinfI | GANTC | 3 cut(s) | 364, 479, 619 |
| HphI | GGTGA | 1 cut(s) | 286 |
| Hpy166II | GTNNAC | 3 cut(s) | 335, 402, 538 |
| Hpy188I | TCNGA | 1 cut(s) | 427 |
| Hpy188III | TCNNGA | 5 cut(s) | 132, 223, 416, 443, 530 |
| Hpy8I | GTNNAC | 3 cut(s) | 335, 402, 538 |
| HpyAV | CCTTC | 1 cut(s) | 335 |
| HpyCH4III | ACNGT | 2 cut(s) | 182, 724 |
| HpyCH4IV | ACGT | 2 cut(s) | 217, 571 |
| HpyCH4V | TGCA | 2 cut(s) | 379, 506 |
| HpyF3I | CTNAG | 4 cut(s) | 30, 173, 279, 597 |
| HpySE526I | ACGT | 2 cut(s) | 217, 571 |
| Hsp92II | CATG | 2 cut(s) | 317, 611 |
| Kzo9I | GATC | 2 cut(s) | 310, 489 |
| LmnI | GCTCC | 3 cut(s) | 26, 205, 438 |
| LpnPI | CCDG | 9 cut(s) | 75, 117, 160, 301, 351, 482, 515, 600, 701 |
| LweI | GCATC | 2 cut(s) | 336, 515 |
| MaeI | CTAG | 2 cut(s) | 45, 555 |
| MaeII | ACGT | 2 cut(s) | 217, 571 |
| MaeIII | GTNAC | 1 cut(s) | 467 |
| MalI | GATC | 2 cut(s) | 312, 491 |
| MboI | GATC | 2 cut(s) | 310, 489 |
| MboII | GAAGA | 2 cut(s) | 173, 703 |
| MhlI | GDGCHC | 1 cut(s) | 102 |
| MluCI | AATT | 4 cut(s) | 188, 388, 483, 518 |
| MlyI | GAGTC | 2 cut(s) | 373, 488 |
| MmeI | TCCRAC | 1 cut(s) | 147 |
| MnlI | CCTC | 5 cut(s) | 117, 167, 219, 526, 576 |
| MseI | TTAA | 1 cut(s) | 387 |
| NdeII | GATC | 2 cut(s) | 310, 489 |
| NlaIII | CATG | 2 cut(s) | 317, 611 |
| NlaIV | GGNNCC | 1 cut(s) | 92 |
| NmuCI | GTSAC | 1 cut(s) | 467 |
| NspI | RCATGY | 1 cut(s) | 611 |
| PciI | ACATGT | 1 cut(s) | 607 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 214 |
| PfeI | GAWTC | 1 cut(s) | 619 |
| PflFI | GACNNNGTC | 1 cut(s) | 682 |
| PkrI | GCNGC | 1 cut(s) | 588 |
| PleI | GAGTC | 2 cut(s) | 372, 487 |
| PpsI | GAGTC | 2 cut(s) | 372, 487 |
| PscI | ACATGT | 1 cut(s) | 607 |
| Psp124BI | GAGCTC | 1 cut(s) | 102 |
| PspN4I | GGNNCC | 1 cut(s) | 92 |
| PstNI | CAGNNNCTG | 1 cut(s) | 180 |
| PsyI | GACNNNGTC | 1 cut(s) | 682 |
| RsaI | GTAC | 4 cut(s) | 43, 49, 179, 539 |
| RsaNI | GTAC | 4 cut(s) | 42, 48, 178, 538 |
| SacI | GAGCTC | 1 cut(s) | 102 |
| SaqAI | TTAA | 1 cut(s) | 387 |
| SatI | GCNGC | 1 cut(s) | 587 |
| Sau3AI | GATC | 2 cut(s) | 310, 489 |
| SchI | GAGTC | 2 cut(s) | 373, 488 |
| SduI | GDGCHC | 1 cut(s) | 102 |
| SfaNI | GCATC | 2 cut(s) | 336, 515 |
| SmlI | CTYRAG | 3 cut(s) | 221, 443, 580 |
| SmoI | CTYRAG | 3 cut(s) | 221, 443, 580 |
| SpeI | ACTAGT | 1 cut(s) | 44 |
| Sse9I | AATT | 4 cut(s) | 188, 388, 483, 518 |
| SsiI | CCGC | 1 cut(s) | 586 |
| SspMI | CTAG | 2 cut(s) | 45, 555 |
| SstI | GAGCTC | 1 cut(s) | 102 |
| StyI | CCWWGG | 1 cut(s) | 85 |
| TaaI | ACNGT | 2 cut(s) | 182, 724 |
| TaiI | ACGT | 2 cut(s) | 220, 574 |
| TaqI | TCGA | 3 cut(s) | 159, 417, 673 |
| TasI | AATT | 4 cut(s) | 188, 388, 483, 518 |
| TatI | WGTACW | 1 cut(s) | 47 |
| TauI | GCSGC | 1 cut(s) | 589 |
| TfiI | GAWTC | 1 cut(s) | 619 |
| Tru1I | TTAA | 1 cut(s) | 387 |
| Tru9I | TTAA | 1 cut(s) | 387 |
| TscAI | CASTG | 1 cut(s) | 72 |
| TseFI | GTSAC | 1 cut(s) | 467 |
| Tsp45I | GTSAC | 1 cut(s) | 467 |
| TspDTI | ATGAA | 3 cut(s) | 17, 29, 618 |
| TspGWI | ACGGA | 1 cut(s) | 503 |
| TspRI | CASTG | 1 cut(s) | 72 |
| Tth111I | GACNNNGTC | 1 cut(s) | 682 |
| XceI | RCATGY | 1 cut(s) | 611 |
| XmiI | GTMKAC | 1 cut(s) | 334 |
| XspI | CTAG | 2 cut(s) | 45, 555 |