Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 765 |
| AccI | GTMKAC | 2 cut(s) | 700, 772 |
| AciI | CCGC | 2 cut(s) | 195, 502 |
| AclI | AACGTT | 2 cut(s) | 456, 786 |
| AclWI | GGATC | 1 cut(s) | 35 |
| AcoI | YGGCCR | 1 cut(s) | 253 |
| AcsI | RAATTY | 1 cut(s) | 878 |
| AcvI | CACGTG | 1 cut(s) | 842 |
| AfaI | GTAC | 2 cut(s) | 182, 381 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 767, 893 |
| AgsI | TTSAA | 6 cut(s) | 113, 225, 425, 445, 660, 862 |
| AjnI | CCWGG | 2 cut(s) | 486, 665 |
| AluBI | AGCT | 5 cut(s) | 320, 515, 642, 850, 902 |
| AluI | AGCT | 5 cut(s) | 320, 515, 642, 850, 902 |
| Alw26I | GTCTC | 2 cut(s) | 325, 411 |
| AlwI | GGATC | 1 cut(s) | 35 |
| Ama87I | CYCGRG | 1 cut(s) | 765 |
| AoxI | GGCC | 3 cut(s) | 253, 498, 914 |
| ApaI | GGGCCC | 1 cut(s) | 502 |
| ApoI | RAATTY | 1 cut(s) | 878 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 106, 138 |
| AspS9I | GGNCC | 5 cut(s) | 498, 499, 597, 669, 873 |
| AsuHPI | GGTGA | 3 cut(s) | 223, 325, 698 |
| AvaI | CYCGRG | 1 cut(s) | 765 |
| AvaII | GGWCC | 3 cut(s) | 597, 669, 873 |
| BaeGI | GKGCMC | 2 cut(s) | 487, 502 |
| BalI | TGGCCA | 1 cut(s) | 255 |
| BanII | GRGCYC | 1 cut(s) | 502 |
| BbrPI | CACGTG | 1 cut(s) | 842 |
| BbsI | GAAGAC | 1 cut(s) | 142 |
| BccI | CCATC | 2 cut(s) | 608, 785 |
| BciT130I | CCWGG | 2 cut(s) | 488, 667 |
| BcoDI | GTCTC | 2 cut(s) | 325, 411 |
| BfaI | CTAG | 2 cut(s) | 74, 210 |
| BfmI | CTRYAG | 1 cut(s) | 478 |
| Bme1390I | CCNGG | 2 cut(s) | 488, 667 |
| Bme18I | GGWCC | 3 cut(s) | 597, 669, 873 |
| BmeT110I | CYCGRG | 1 cut(s) | 765 |
| BmgT120I | GGNCC | 5 cut(s) | 498, 499, 597, 669, 873 |
| BmiI | GGNNCC | 2 cut(s) | 500, 759 |
| BmrFI | CCNGG | 2 cut(s) | 488, 667 |
| BmsI | GCATC | 3 cut(s) | 248, 352, 382 |
| BpiI | GAAGAC | 1 cut(s) | 142 |
| BsaAI | YACGTR | 1 cut(s) | 842 |
| BsaBI | GATNNNNATC | 1 cut(s) | 104 |
| BsaJI | CCNNGG | 4 cut(s) | 309, 486, 487, 917 |
| BsaWI | WCCGGW | 1 cut(s) | 139 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 767, 893 |
| Bse1I | ACTGG | 1 cut(s) | 429 |
| Bse8I | GATNNNNATC | 1 cut(s) | 104 |
| BseBI | CCWGG | 2 cut(s) | 488, 667 |
| BseDI | CCNNGG | 4 cut(s) | 309, 486, 487, 917 |
| BseGI | GGATG | 2 cut(s) | 397, 580 |
| BseJI | GATNNNNATC | 1 cut(s) | 104 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 767, 893 |
| BseMII | CTCAG | 1 cut(s) | 722 |
| BseNI | ACTGG | 1 cut(s) | 429 |
| BseSI | GKGCMC | 2 cut(s) | 487, 502 |
| BseYI | CCCAGC | 1 cut(s) | 850 |
| BshFI | GGCC | 3 cut(s) | 255, 500, 916 |
| BsiHKCI | CYCGRG | 1 cut(s) | 765 |
| BsiSI | CCGG | 1 cut(s) | 140 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 767, 893 |
| BsmAI | GTCTC | 2 cut(s) | 325, 411 |
| BsmBI | CGTCTC | 1 cut(s) | 411 |
| BsmI | GAATGC | 2 cut(s) | 270, 655 |
| BsnI | GGCC | 3 cut(s) | 255, 500, 916 |
| BsoBI | CYCGRG | 1 cut(s) | 765 |
| Bsp120I | GGGCCC | 1 cut(s) | 498 |
| Bsp1286I | GDGCHC | 2 cut(s) | 487, 502 |
| Bsp143I | GATC | 2 cut(s) | 40, 67 |
| BspACI | CCGC | 2 cut(s) | 195, 502 |
| BspANI | GGCC | 3 cut(s) | 255, 500, 916 |
| BspCNI | CTCAG | 1 cut(s) | 721 |
| BspHI | TCATGA | 1 cut(s) | 538 |
| BspLI | GGNNCC | 2 cut(s) | 500, 759 |
| BspPI | GGATC | 1 cut(s) | 35 |
| BsrI | ACTGG | 1 cut(s) | 429 |
| BssECI | CCNNGG | 4 cut(s) | 309, 486, 487, 917 |
| BssMI | GATC | 2 cut(s) | 40, 67 |
| BssT1I | CCWWGG | 1 cut(s) | 309 |
| Bst2UI | CCWGG | 2 cut(s) | 488, 667 |
| Bst4CI | ACNGT | 1 cut(s) | 742 |
| BstBAI | YACGTR | 1 cut(s) | 842 |
| BstC8I | GCNNGC | 1 cut(s) | 502 |
| BstDEI | CTNAG | 3 cut(s) | 125, 184, 708 |
| BstF5I | GGATG | 2 cut(s) | 397, 580 |
| BstKTI | GATC | 2 cut(s) | 43, 70 |
| BstMAI | GTCTC | 2 cut(s) | 325, 411 |
| BstMBI | GATC | 2 cut(s) | 40, 67 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 157, 913 |
| BstNI | CCWGG | 2 cut(s) | 488, 667 |
| BstNSI | RCATGY | 2 cut(s) | 440, 468 |
| BstSCI | CCNGG | 2 cut(s) | 486, 665 |
| BstSFI | CTRYAG | 1 cut(s) | 478 |
| BstSLI | GKGCMC | 2 cut(s) | 487, 502 |
| BstV2I | GAAGAC | 1 cut(s) | 142 |
| BstX2I | RGATCY | 1 cut(s) | 40 |
| BstYI | RGATCY | 1 cut(s) | 40 |
| BsuRI | GGCC | 3 cut(s) | 255, 500, 916 |
| BtsCI | GGATG | 2 cut(s) | 397, 580 |
| Cac8I | GCNNGC | 1 cut(s) | 502 |
| CciI | TCATGA | 1 cut(s) | 538 |
| Cfr13I | GGNCC | 5 cut(s) | 498, 499, 597, 669, 873 |
| Csp6I | GTAC | 2 cut(s) | 181, 380 |
| CviAII | CATG | 8 cut(s) | 173, 437, 465, 509, 539, 652, 673, 908 |
| CviQI | GTAC | 2 cut(s) | 181, 380 |
| DdeI | CTNAG | 3 cut(s) | 125, 184, 708 |
| DpnI | GATC | 2 cut(s) | 42, 69 |
| DpnII | GATC | 2 cut(s) | 40, 67 |
| EaeI | YGGCCR | 1 cut(s) | 253 |
| Eco130I | CCWWGG | 1 cut(s) | 309 |
| Eco24I | GRGCYC | 1 cut(s) | 502 |
| Eco32I | GATATC | 1 cut(s) | 106 |
| Eco47I | GGWCC | 3 cut(s) | 597, 669, 873 |
| Eco72I | CACGTG | 1 cut(s) | 842 |
| Eco88I | CYCGRG | 1 cut(s) | 765 |
| EcoO109I | RGGNCCY | 1 cut(s) | 498 |
| EcoRII | CCWGG | 2 cut(s) | 486, 665 |
| EcoRV | GATATC | 1 cut(s) | 106 |
| EcoT14I | CCWWGG | 1 cut(s) | 309 |
| EcoT22I | ATGCAT | 1 cut(s) | 657 |
| EcoT38I | GRGCYC | 1 cut(s) | 502 |
| ErhI | CCWWGG | 1 cut(s) | 309 |
| Esp3I | CGTCTC | 1 cut(s) | 411 |
| FaeI | CATG | 8 cut(s) | 176, 440, 468, 512, 542, 655, 676, 911 |
| FatI | CATG | 8 cut(s) | 172, 436, 464, 508, 538, 651, 672, 907 |
| FauI | CCCGC | 1 cut(s) | 509 |
| FauNDI | CATATG | 1 cut(s) | 891 |
| FblI | GTMKAC | 2 cut(s) | 700, 772 |
| FokI | GGATG | 2 cut(s) | 404, 587 |
| FriOI | GRGCYC | 1 cut(s) | 502 |
| FspBI | CTAG | 2 cut(s) | 74, 210 |
| GsaI | CCCAGC | 1 cut(s) | 854 |
| HaeIII | GGCC | 3 cut(s) | 255, 500, 916 |
| HapII | CCGG | 1 cut(s) | 140 |
| Hin1II | CATG | 8 cut(s) | 176, 440, 468, 512, 542, 655, 676, 911 |
| HinfI | GANTC | 3 cut(s) | 425, 535, 858 |
| HpaII | CCGG | 1 cut(s) | 140 |
| HphI | GGTGA | 3 cut(s) | 223, 325, 698 |
| Hpy166II | GTNNAC | 5 cut(s) | 87, 181, 216, 701, 773 |
| Hpy188I | TCNGA | 3 cut(s) | 45, 711, 804 |
| Hpy188III | TCNNGA | 2 cut(s) | 340, 539 |
| Hpy8I | GTNNAC | 5 cut(s) | 87, 181, 216, 701, 773 |
| Hpy99I | CGWCG | 1 cut(s) | 263 |
| HpyAV | CCTTC | 1 cut(s) | 277 |
| HpyCH4III | ACNGT | 1 cut(s) | 742 |
| HpyCH4IV | ACGT | 4 cut(s) | 420, 456, 786, 841 |
| HpyCH4V | TGCA | 8 cut(s) | 411, 436, 464, 655, 676, 745, 839, 907 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 157, 913 |
| HpyF3I | CTNAG | 3 cut(s) | 125, 184, 708 |
| HpySE526I | ACGT | 4 cut(s) | 420, 456, 786, 841 |
| Hsp92II | CATG | 8 cut(s) | 176, 440, 468, 512, 542, 655, 676, 911 |
| Kzo9I | GATC | 2 cut(s) | 40, 67 |
| LmnI | GCTCC | 2 cut(s) | 520, 763 |
| LpnPI | CCDG | 8 cut(s) | 153, 442, 473, 500, 589, 652, 679, 836 |
| LweI | GCATC | 3 cut(s) | 248, 352, 382 |
| MaeI | CTAG | 2 cut(s) | 74, 210 |
| MaeII | ACGT | 4 cut(s) | 420, 456, 786, 841 |
| MaeIII | GTNAC | 2 cut(s) | 452, 736 |
| MalI | GATC | 2 cut(s) | 42, 69 |
| MboI | GATC | 2 cut(s) | 40, 67 |
| MboII | GAAGA | 6 cut(s) | 26, 58, 147, 292, 384, 620 |
| MfeI | CAATTG | 1 cut(s) | 677 |
| MflI | RGATCY | 1 cut(s) | 40 |
| MhlI | GDGCHC | 2 cut(s) | 487, 502 |
| MlsI | TGGCCA | 1 cut(s) | 255 |
| MluCI | AATT | 5 cut(s) | 117, 448, 677, 825, 878 |
| MluNI | TGGCCA | 1 cut(s) | 255 |
| MlyI | GAGTC | 1 cut(s) | 529 |
| MmeI | TCCRAC | 2 cut(s) | 110, 542 |
| Mox20I | TGGCCA | 1 cut(s) | 255 |
| Mph1103I | ATGCAT | 1 cut(s) | 657 |
| MscI | TGGCCA | 1 cut(s) | 255 |
| MseI | TTAA | 4 cut(s) | 51, 368, 557, 645 |
| Msp20I | TGGCCA | 1 cut(s) | 255 |
| MspI | CCGG | 1 cut(s) | 140 |
| MspR9I | CCNGG | 2 cut(s) | 488, 667 |
| MunI | CAATTG | 1 cut(s) | 677 |
| Mva1269I | GAATGC | 2 cut(s) | 270, 655 |
| MvaI | CCWGG | 2 cut(s) | 488, 667 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 157, 913 |
| NdeI | CATATG | 1 cut(s) | 891 |
| NdeII | GATC | 2 cut(s) | 40, 67 |
| NlaIII | CATG | 8 cut(s) | 176, 440, 468, 512, 542, 655, 676, 911 |
| NlaIV | GGNNCC | 2 cut(s) | 500, 759 |
| NmuCI | GTSAC | 1 cut(s) | 736 |
| NsiI | ATGCAT | 1 cut(s) | 657 |
| NspI | RCATGY | 2 cut(s) | 440, 468 |
| PaeR7I | CTCGAG | 1 cut(s) | 765 |
| PagI | TCATGA | 1 cut(s) | 538 |
| PasI | CCCWGGG | 1 cut(s) | 487 |
| PctI | GAATGC | 2 cut(s) | 270, 655 |
| PfeI | GAWTC | 2 cut(s) | 425, 858 |
| PleI | GAGTC | 1 cut(s) | 529 |
| PmaCI | CACGTG | 1 cut(s) | 842 |
| PmlI | CACGTG | 1 cut(s) | 842 |
| PpsI | GAGTC | 1 cut(s) | 529 |
| Ppu21I | YACGTR | 1 cut(s) | 842 |
| Psp1406I | AACGTT | 2 cut(s) | 456, 786 |
| Psp6I | CCWGG | 2 cut(s) | 486, 665 |
| PspCI | CACGTG | 1 cut(s) | 842 |
| PspFI | CCCAGC | 1 cut(s) | 850 |
| PspGI | CCWGG | 2 cut(s) | 486, 665 |
| PspN4I | GGNNCC | 2 cut(s) | 500, 759 |
| PspOMI | GGGCCC | 1 cut(s) | 498 |
| PspPI | GGNCC | 5 cut(s) | 498, 499, 597, 669, 873 |
| PspXI | VCTCGAGB | 1 cut(s) | 765 |
| PsuI | RGATCY | 1 cut(s) | 40 |
| RsaI | GTAC | 2 cut(s) | 182, 381 |
| RsaNI | GTAC | 2 cut(s) | 181, 380 |
| SaqAI | TTAA | 4 cut(s) | 51, 368, 557, 645 |
| Sau3AI | GATC | 2 cut(s) | 40, 67 |
| Sau96I | GGNCC | 5 cut(s) | 498, 499, 597, 669, 873 |
| SchI | GAGTC | 1 cut(s) | 529 |
| ScrFI | CCNGG | 2 cut(s) | 488, 667 |
| SduI | GDGCHC | 2 cut(s) | 487, 502 |
| SfaNI | GCATC | 3 cut(s) | 248, 352, 382 |
| SfcI | CTRYAG | 1 cut(s) | 478 |
| Sfr274I | CTCGAG | 1 cut(s) | 765 |
| SinI | GGWCC | 3 cut(s) | 597, 669, 873 |
| SlaI | CTCGAG | 1 cut(s) | 765 |
| SmlI | CTYRAG | 1 cut(s) | 765 |
| SmoI | CTYRAG | 1 cut(s) | 765 |
| Sse9I | AATT | 5 cut(s) | 117, 448, 677, 825, 878 |
| SsiI | CCGC | 2 cut(s) | 195, 502 |
| SspI | AATATT | 1 cut(s) | 346 |
| SspMI | CTAG | 2 cut(s) | 74, 210 |
| StyD4I | CCNGG | 2 cut(s) | 486, 665 |
| StyI | CCWWGG | 1 cut(s) | 309 |
| TaaI | ACNGT | 1 cut(s) | 742 |
| TaiI | ACGT | 4 cut(s) | 423, 459, 789, 844 |
| TaqI | TCGA | 2 cut(s) | 165, 766 |
| TasI | AATT | 5 cut(s) | 117, 448, 677, 825, 878 |
| TatI | WGTACW | 1 cut(s) | 180 |
| TfiI | GAWTC | 2 cut(s) | 425, 858 |
| Tru1I | TTAA | 4 cut(s) | 51, 368, 557, 645 |
| Tru9I | TTAA | 4 cut(s) | 51, 368, 557, 645 |
| TseFI | GTSAC | 1 cut(s) | 736 |
| Tsp45I | GTSAC | 1 cut(s) | 736 |
| TspGWI | ACGGA | 1 cut(s) | 276 |
| VpaK11BI | GGWCC | 3 cut(s) | 597, 669, 873 |
| XapI | RAATTY | 1 cut(s) | 878 |
| XceI | RCATGY | 2 cut(s) | 440, 468 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 679 |
| XhoI | CTCGAG | 1 cut(s) | 765 |
| XmiI | GTMKAC | 2 cut(s) | 700, 772 |
| XspI | CTAG | 2 cut(s) | 74, 210 |
| Zsp2I | ATGCAT | 1 cut(s) | 657 |