Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 20 - 104 | 4.3e-11 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 121 |
| AfaI | GTAC | 3 cut(s) | 162, 253, 388 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 121 |
| AjnI | CCWGG | 2 cut(s) | 114, 244 |
| AluBI | AGCT | 5 cut(s) | 11, 95, 167, 199, 241 |
| AluI | AGCT | 5 cut(s) | 11, 95, 167, 199, 241 |
| Alw21I | GWGCWC | 1 cut(s) | 24 |
| Alw44I | GTGCAC | 1 cut(s) | 20 |
| ApaLI | GTGCAC | 1 cut(s) | 20 |
| ApeKI | GCWGC | 2 cut(s) | 241, 287 |
| AspS9I | GGNCC | 1 cut(s) | 125 |
| AsuC2I | CCSGG | 1 cut(s) | 203 |
| AvaII | GGWCC | 1 cut(s) | 125 |
| BaeGI | GKGCMC | 1 cut(s) | 24 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 251, 284 |
| Bbv12I | GWGCWC | 1 cut(s) | 24 |
| BbvI | GCAGC | 2 cut(s) | 228, 274 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 78, 112 |
| BciT130I | CCWGG | 2 cut(s) | 116, 246 |
| BcnI | CCSGG | 1 cut(s) | 203 |
| BfaI | CTAG | 2 cut(s) | 137, 378 |
| BisI | GCNGC | 2 cut(s) | 242, 288 |
| BlsI | GCNGC | 2 cut(s) | 243, 289 |
| BmcAI | AGTACT | 1 cut(s) | 253 |
| Bme1390I | CCNGG | 3 cut(s) | 116, 203, 246 |
| Bme18I | GGWCC | 1 cut(s) | 125 |
| BmgT120I | GGNCC | 1 cut(s) | 125 |
| BmiI | GGNNCC | 1 cut(s) | 126 |
| BmrFI | CCNGG | 3 cut(s) | 116, 203, 246 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 131, 163 |
| BpuEI | CTTGAG | 1 cut(s) | 51 |
| BpuMI | CCSGG | 1 cut(s) | 203 |
| BsaJI | CCNNGG | 1 cut(s) | 115 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 121 |
| Bse1I | ACTGG | 1 cut(s) | 128 |
| Bse3DI | GCAATG | 1 cut(s) | 337 |
| BseBI | CCWGG | 2 cut(s) | 116, 246 |
| BseDI | CCNNGG | 1 cut(s) | 115 |
| BseGI | GGATG | 2 cut(s) | 10, 223 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 121 |
| BseMI | GCAATG | 1 cut(s) | 337 |
| BseMII | CTCAG | 1 cut(s) | 251 |
| BseNI | ACTGG | 1 cut(s) | 128 |
| BseRI | GAGGAG | 1 cut(s) | 380 |
| BseSI | GKGCMC | 1 cut(s) | 24 |
| BseXI | GCAGC | 2 cut(s) | 228, 274 |
| BsgI | GTGCAG | 1 cut(s) | 60 |
| BsiHKAI | GWGCWC | 1 cut(s) | 24 |
| BsiSI | CCGG | 1 cut(s) | 202 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 121 |
| BsmI | GAATGC | 1 cut(s) | 172 |
| Bsp1286I | GDGCHC | 1 cut(s) | 24 |
| BspCNI | CTCAG | 1 cut(s) | 250 |
| BspLI | GGNNCC | 1 cut(s) | 126 |
| BsrDI | GCAATG | 1 cut(s) | 337 |
| BsrI | ACTGG | 1 cut(s) | 128 |
| BssECI | CCNNGG | 1 cut(s) | 115 |
| Bst2UI | CCWGG | 2 cut(s) | 116, 246 |
| BstC8I | GCNNGC | 2 cut(s) | 97, 101 |
| BstDEI | CTNAG | 1 cut(s) | 237 |
| BstF5I | GGATG | 2 cut(s) | 10, 223 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 308 |
| BstNI | CCWGG | 2 cut(s) | 116, 246 |
| BstSCI | CCNGG | 3 cut(s) | 114, 201, 244 |
| BstSLI | GKGCMC | 1 cut(s) | 24 |
| BstV1I | GCAGC | 2 cut(s) | 228, 274 |
| BtsCI | GGATG | 2 cut(s) | 10, 223 |
| Cac8I | GCNNGC | 2 cut(s) | 97, 101 |
| Cfr13I | GGNCC | 1 cut(s) | 125 |
| Csp6I | GTAC | 3 cut(s) | 161, 252, 387 |
| CviAII | CATG | 1 cut(s) | 327 |
| CviJI | RGCY | 7 cut(s) | 11, 95, 103, 167, 199, 227, 241 |
| CviKI_1 | RGCY | 7 cut(s) | 11, 95, 103, 167, 199, 227, 241 |
| CviQI | GTAC | 3 cut(s) | 161, 252, 387 |
| DdeI | CTNAG | 1 cut(s) | 237 |
| Eco47I | GGWCC | 1 cut(s) | 125 |
| EcoRII | CCWGG | 2 cut(s) | 114, 244 |
| EcoT22I | ATGCAT | 1 cut(s) | 174 |
| FaeI | CATG | 1 cut(s) | 330 |
| FaiI | YATR | 5 cut(s) | 170, 213, 316, 328, 362 |
| FatI | CATG | 1 cut(s) | 326 |
| Fnu4HI | GCNGC | 2 cut(s) | 242, 288 |
| FokI | GGATG | 2 cut(s) | 17, 230 |
| Fsp4HI | GCNGC | 2 cut(s) | 242, 288 |
| FspBI | CTAG | 2 cut(s) | 137, 378 |
| GluI | GCNGC | 2 cut(s) | 242, 288 |
| HapII | CCGG | 1 cut(s) | 202 |
| Hin1II | CATG | 1 cut(s) | 330 |
| HinfI | GANTC | 3 cut(s) | 140, 146, 185 |
| HpaII | CCGG | 1 cut(s) | 202 |
| Hpy166II | GTNNAC | 1 cut(s) | 22 |
| Hpy188I | TCNGA | 1 cut(s) | 145 |
| Hpy188III | TCNNGA | 4 cut(s) | 110, 137, 272, 378 |
| Hpy8I | GTNNAC | 1 cut(s) | 22 |
| HpyAV | CCTTC | 1 cut(s) | 269 |
| HpyCH4V | TGCA | 5 cut(s) | 22, 41, 99, 172, 330 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 308 |
| HpyF3I | CTNAG | 1 cut(s) | 237 |
| Hsp92II | CATG | 1 cut(s) | 330 |
| LmnI | GCTCC | 2 cut(s) | 8, 204 |
| Lsp1109I | GCAGC | 2 cut(s) | 228, 274 |
| MaeI | CTAG | 2 cut(s) | 137, 378 |
| MboII | GAAGA | 1 cut(s) | 180 |
| MhlI | GDGCHC | 1 cut(s) | 24 |
| MluCI | AATT | 1 cut(s) | 45 |
| MlyI | GAGTC | 2 cut(s) | 140, 149 |
| MnlI | CCTC | 4 cut(s) | 67, 208, 358, 363 |
| Mph1103I | ATGCAT | 1 cut(s) | 174 |
| MseI | TTAA | 1 cut(s) | 391 |
| MslI | CAYNNNNRTG | 1 cut(s) | 33 |
| MspA1I | CMGCKG | 1 cut(s) | 241 |
| MspI | CCGG | 1 cut(s) | 202 |
| MspR9I | CCNGG | 3 cut(s) | 116, 203, 246 |
| Mva1269I | GAATGC | 1 cut(s) | 172 |
| MvaI | CCWGG | 2 cut(s) | 116, 246 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 308 |
| NciI | CCSGG | 1 cut(s) | 203 |
| NlaIII | CATG | 1 cut(s) | 330 |
| NlaIV | GGNNCC | 1 cut(s) | 126 |
| NsiI | ATGCAT | 1 cut(s) | 174 |
| PctI | GAATGC | 1 cut(s) | 172 |
| PfeI | GAWTC | 1 cut(s) | 185 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 121 |
| PkrI | GCNGC | 2 cut(s) | 243, 289 |
| PleI | GAGTC | 2 cut(s) | 140, 148 |
| PpsI | GAGTC | 2 cut(s) | 140, 148 |
| Psp6I | CCWGG | 2 cut(s) | 114, 244 |
| PspGI | CCWGG | 2 cut(s) | 114, 244 |
| PspN4I | GGNNCC | 1 cut(s) | 126 |
| PspPI | GGNCC | 1 cut(s) | 125 |
| PvuII | CAGCTG | 1 cut(s) | 241 |
| RsaI | GTAC | 3 cut(s) | 162, 253, 388 |
| RsaNI | GTAC | 3 cut(s) | 161, 252, 387 |
| RseI | CAYNNNNRTG | 1 cut(s) | 33 |
| SaqAI | TTAA | 1 cut(s) | 391 |
| SatI | GCNGC | 2 cut(s) | 242, 288 |
| Sau96I | GGNCC | 1 cut(s) | 125 |
| ScaI | AGTACT | 1 cut(s) | 253 |
| SchI | GAGTC | 2 cut(s) | 140, 149 |
| ScrFI | CCNGG | 3 cut(s) | 116, 203, 246 |
| SduI | GDGCHC | 1 cut(s) | 24 |
| SetI | ASST | 7 cut(s) | 13, 97, 169, 201, 243, 326, 355 |
| SinI | GGWCC | 1 cut(s) | 125 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 33 |
| SmlI | CTYRAG | 1 cut(s) | 66 |
| SmoI | CTYRAG | 1 cut(s) | 66 |
| Sse9I | AATT | 1 cut(s) | 45 |
| SspMI | CTAG | 2 cut(s) | 137, 378 |
| StyD4I | CCNGG | 3 cut(s) | 114, 201, 244 |
| TaqI | TCGA | 1 cut(s) | 88 |
| TasI | AATT | 1 cut(s) | 45 |
| TatI | WGTACW | 3 cut(s) | 160, 251, 386 |
| TfiI | GAWTC | 1 cut(s) | 185 |
| Tru1I | TTAA | 1 cut(s) | 391 |
| Tru9I | TTAA | 1 cut(s) | 391 |
| TseI | GCWGC | 2 cut(s) | 241, 287 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 121 |
| VneI | GTGCAC | 1 cut(s) | 20 |
| VpaK11BI | GGWCC | 1 cut(s) | 125 |
| XbaI | TCTAGA | 2 cut(s) | 136, 377 |
| XspI | CTAG | 2 cut(s) | 137, 378 |
| ZrmI | AGTACT | 1 cut(s) | 253 |
| Zsp2I | ATGCAT | 1 cut(s) | 174 |