Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 43 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 125 |
| Acc36I | ACCTGC | 1 cut(s) | 43 |
| AccII | CGCG | 1 cut(s) | 636 |
| AciI | CCGC | 1 cut(s) | 675 |
| AclWI | GGATC | 3 cut(s) | 89, 539, 552 |
| AcoI | YGGCCR | 1 cut(s) | 600 |
| AcsI | RAATTY | 2 cut(s) | 220, 510 |
| AcvI | CACGTG | 1 cut(s) | 424 |
| AfaI | GTAC | 1 cut(s) | 419 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 554, 555 |
| AgsI | TTSAA | 3 cut(s) | 88, 509, 631 |
| AjnI | CCWGG | 2 cut(s) | 449, 532 |
| AluBI | AGCT | 7 cut(s) | 28, 103, 243, 301, 351, 361, 530 |
| AluI | AGCT | 7 cut(s) | 28, 103, 243, 301, 351, 361, 530 |
| Alw21I | GWGCWC | 4 cut(s) | 105, 245, 429, 532 |
| Alw26I | GTCTC | 3 cut(s) | 133, 437, 691 |
| AlwI | GGATC | 3 cut(s) | 89, 539, 552 |
| AoxI | GGCC | 1 cut(s) | 600 |
| ApeKI | GCWGC | 1 cut(s) | 361 |
| ApoI | RAATTY | 2 cut(s) | 220, 510 |
| AsuHPI | GGTGA | 2 cut(s) | 67, 472 |
| AsuII | TTCGAA | 1 cut(s) | 65 |
| BalI | TGGCCA | 1 cut(s) | 602 |
| BamHI | GGATCC | 1 cut(s) | 544 |
| BanII | GRGCYC | 3 cut(s) | 105, 245, 532 |
| BauI | CACGAG | 1 cut(s) | 164 |
| BbrPI | CACGTG | 1 cut(s) | 424 |
| Bbv12I | GWGCWC | 4 cut(s) | 105, 245, 429, 532 |
| BbvCI | CCTCAGC | 1 cut(s) | 302 |
| BbvI | GCAGC | 1 cut(s) | 348 |
| BccI | CCATC | 1 cut(s) | 782 |
| BceAI | ACGGC | 1 cut(s) | 739 |
| BciT130I | CCWGG | 2 cut(s) | 451, 534 |
| BcoDI | GTCTC | 3 cut(s) | 133, 437, 691 |
| BfuAI | ACCTGC | 1 cut(s) | 43 |
| BglII | AGATCT | 1 cut(s) | 367 |
| BisI | GCNGC | 1 cut(s) | 362 |
| BlpI | GCTNAGC | 1 cut(s) | 357 |
| BlsI | GCNGC | 1 cut(s) | 363 |
| Bme1390I | CCNGG | 2 cut(s) | 451, 534 |
| BmiI | GGNNCC | 1 cut(s) | 546 |
| BmrFI | CCNGG | 2 cut(s) | 451, 534 |
| BmsI | GCATC | 1 cut(s) | 620 |
| BpmI | CTGGAG | 3 cut(s) | 392, 516, 689 |
| Bpu10I | CCTNAGC | 3 cut(s) | 96, 123, 302 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 357 |
| Bpu14I | TTCGAA | 1 cut(s) | 65 |
| BpuEI | CTTGAG | 3 cut(s) | 413, 420, 758 |
| Bsa29I | ATCGAT | 1 cut(s) | 231 |
| BsaAI | YACGTR | 2 cut(s) | 407, 424 |
| BsaBI | GATNNNNATC | 1 cut(s) | 20 |
| BsaI | GGTCTC | 2 cut(s) | 133, 691 |
| BsaJI | CCNNGG | 2 cut(s) | 661, 721 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 554, 555 |
| Bse1I | ACTGG | 1 cut(s) | 687 |
| Bse3DI | GCAATG | 1 cut(s) | 264 |
| Bse8I | GATNNNNATC | 1 cut(s) | 20 |
| BseBI | CCWGG | 2 cut(s) | 451, 534 |
| BseCI | ATCGAT | 1 cut(s) | 231 |
| BseDI | CCNNGG | 2 cut(s) | 661, 721 |
| BseJI | GATNNNNATC | 1 cut(s) | 20 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 554, 555 |
| BseMI | GCAATG | 1 cut(s) | 264 |
| BseMII | CTCAG | 5 cut(s) | 110, 137, 293, 338, 348 |
| BseNI | ACTGG | 1 cut(s) | 687 |
| BseRI | GAGGAG | 3 cut(s) | 319, 488, 679 |
| BseXI | GCAGC | 1 cut(s) | 348 |
| BseYI | CCCAGC | 1 cut(s) | 325 |
| BsgI | GTGCAG | 1 cut(s) | 542 |
| Bsh1236I | CGCG | 1 cut(s) | 636 |
| BshFI | GGCC | 1 cut(s) | 602 |
| BshVI | ATCGAT | 1 cut(s) | 231 |
| BsiHKAI | GWGCWC | 4 cut(s) | 105, 245, 429, 532 |
| BslFI | GGGAC | 2 cut(s) | 323, 590 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 554, 555 |
| BsmAI | GTCTC | 3 cut(s) | 133, 437, 691 |
| BsmFI | GGGAC | 2 cut(s) | 323, 590 |
| BsnI | GGCC | 1 cut(s) | 602 |
| Bso31I | GGTCTC | 2 cut(s) | 133, 691 |
| Bsp119I | TTCGAA | 1 cut(s) | 65 |
| Bsp1286I | GDGCHC | 4 cut(s) | 105, 245, 429, 532 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 357 |
| Bsp19I | CCATGG | 1 cut(s) | 661 |
| BspACI | CCGC | 1 cut(s) | 675 |
| BspANI | GGCC | 1 cut(s) | 602 |
| BspCNI | CTCAG | 5 cut(s) | 109, 136, 294, 339, 349 |
| BspDI | ATCGAT | 1 cut(s) | 231 |
| BspFNI | CGCG | 1 cut(s) | 636 |
| BspLI | GGNNCC | 1 cut(s) | 546 |
| BspMI | ACCTGC | 1 cut(s) | 43 |
| BspPI | GGATC | 3 cut(s) | 89, 539, 552 |
| BspT104I | TTCGAA | 1 cut(s) | 65 |
| BspTNI | GGTCTC | 2 cut(s) | 133, 691 |
| BsrDI | GCAATG | 1 cut(s) | 264 |
| BsrI | ACTGG | 1 cut(s) | 687 |
| BssECI | CCNNGG | 2 cut(s) | 661, 721 |
| BssSI | CACGAG | 1 cut(s) | 164 |
| BssT1I | CCWWGG | 1 cut(s) | 661 |
| Bst2BI | CACGAG | 1 cut(s) | 164 |
| Bst2UI | CCWGG | 2 cut(s) | 451, 534 |
| Bst4CI | ACNGT | 2 cut(s) | 109, 485 |
| BstBAI | YACGTR | 2 cut(s) | 407, 424 |
| BstBI | TTCGAA | 1 cut(s) | 65 |
| BstDEI | CTNAG | 5 cut(s) | 96, 123, 302, 347, 357 |
| BstDSI | CCRYGG | 2 cut(s) | 661, 721 |
| BstEII | GGTNACC | 1 cut(s) | 55 |
| BstFNI | CGCG | 1 cut(s) | 636 |
| BstMAI | GTCTC | 3 cut(s) | 133, 437, 691 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 608 |
| BstNI | CCWGG | 2 cut(s) | 451, 534 |
| BstPI | GGTNACC | 1 cut(s) | 55 |
| BstSCI | CCNGG | 2 cut(s) | 449, 532 |
| BstUI | CGCG | 1 cut(s) | 636 |
| BstV1I | GCAGC | 1 cut(s) | 348 |
| BstX2I | RGATCY | 3 cut(s) | 81, 367, 544 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 668 |
| BstYI | RGATCY | 3 cut(s) | 81, 367, 544 |
| Bsu15I | ATCGAT | 1 cut(s) | 231 |
| BsuRI | GGCC | 1 cut(s) | 602 |
| BsuTUI | ATCGAT | 1 cut(s) | 231 |
| BtgI | CCRYGG | 2 cut(s) | 661, 721 |
| BtsIMutI | CAGTG | 2 cut(s) | 150, 680 |
| BveI | ACCTGC | 1 cut(s) | 43 |
| ClaI | ATCGAT | 1 cut(s) | 231 |
| CseI | GACGC | 2 cut(s) | 128, 625 |
| Csp6I | GTAC | 1 cut(s) | 418 |
| CviAII | CATG | 7 cut(s) | 139, 332, 497, 662, 668, 749, 788 |
| CviQI | GTAC | 1 cut(s) | 418 |
| DdeI | CTNAG | 5 cut(s) | 96, 123, 302, 347, 357 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 125 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 125 |
| EaeI | YGGCCR | 1 cut(s) | 600 |
| Ecl136II | GAGCTC | 3 cut(s) | 103, 243, 530 |
| Eco130I | CCWWGG | 1 cut(s) | 661 |
| Eco24I | GRGCYC | 3 cut(s) | 105, 245, 532 |
| Eco31I | GGTCTC | 2 cut(s) | 133, 691 |
| Eco53kI | GAGCTC | 3 cut(s) | 103, 243, 530 |
| Eco72I | CACGTG | 1 cut(s) | 424 |
| Eco91I | GGTNACC | 1 cut(s) | 55 |
| EcoICRI | GAGCTC | 3 cut(s) | 103, 243, 530 |
| EcoO65I | GGTNACC | 1 cut(s) | 55 |
| EcoRII | CCWGG | 2 cut(s) | 449, 532 |
| EcoT14I | CCWWGG | 1 cut(s) | 661 |
| EcoT22I | ATGCAT | 1 cut(s) | 498 |
| EcoT38I | GRGCYC | 3 cut(s) | 105, 245, 532 |
| ErhI | CCWWGG | 1 cut(s) | 661 |
| FaeI | CATG | 7 cut(s) | 142, 335, 500, 665, 671, 752, 791 |
| FaqI | GGGAC | 2 cut(s) | 323, 590 |
| FatI | CATG | 7 cut(s) | 138, 331, 496, 661, 667, 748, 787 |
| Fnu4HI | GCNGC | 1 cut(s) | 362 |
| FriOI | GRGCYC | 3 cut(s) | 105, 245, 532 |
| Fsp4HI | GCNGC | 1 cut(s) | 362 |
| GluI | GCNGC | 1 cut(s) | 362 |
| GsaI | CCCAGC | 1 cut(s) | 329 |
| GsuI | CTGGAG | 3 cut(s) | 392, 516, 689 |
| HaeIII | GGCC | 1 cut(s) | 602 |
| HgaI | GACGC | 2 cut(s) | 128, 625 |
| Hin1II | CATG | 7 cut(s) | 142, 335, 500, 665, 671, 752, 791 |
| HincII | GTYRAC | 1 cut(s) | 292 |
| HindII | GTYRAC | 1 cut(s) | 292 |
| HinfI | GANTC | 3 cut(s) | 385, 433, 584 |
| HpaI | GTTAAC | 1 cut(s) | 292 |
| HphI | GGTGA | 2 cut(s) | 67, 472 |
| Hpy166II | GTNNAC | 4 cut(s) | 292, 640, 680, 761 |
| Hpy188I | TCNGA | 1 cut(s) | 348 |
| Hpy188III | TCNNGA | 6 cut(s) | 34, 88, 98, 371, 430, 706 |
| Hpy8I | GTNNAC | 4 cut(s) | 292, 640, 680, 761 |
| Hpy99I | CGWCG | 1 cut(s) | 75 |
| HpyAV | CCTTC | 2 cut(s) | 85, 566 |
| HpyCH4III | ACNGT | 2 cut(s) | 109, 485 |
| HpyCH4IV | ACGT | 2 cut(s) | 406, 423 |
| HpyCH4V | TGCA | 6 cut(s) | 142, 364, 397, 496, 523, 596 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 608 |
| HpyF3I | CTNAG | 5 cut(s) | 96, 123, 302, 347, 357 |
| HpySE526I | ACGT | 2 cut(s) | 406, 423 |
| Hsp92II | CATG | 7 cut(s) | 142, 335, 500, 665, 671, 752, 791 |
| KspAI | GTTAAC | 1 cut(s) | 292 |
| LmnI | GCTCC | 5 cut(s) | 100, 240, 527, 535, 608 |
| Lsp1109I | GCAGC | 1 cut(s) | 348 |
| LweI | GCATC | 1 cut(s) | 620 |
| MaeII | ACGT | 2 cut(s) | 406, 423 |
| MaeIII | GTNAC | 2 cut(s) | 55, 116 |
| MboII | GAAGA | 5 cut(s) | 25, 76, 208, 229, 475 |
| MflI | RGATCY | 3 cut(s) | 81, 367, 544 |
| MhlI | GDGCHC | 4 cut(s) | 105, 245, 429, 532 |
| MlsI | TGGCCA | 1 cut(s) | 602 |
| MluCI | AATT | 4 cut(s) | 220, 487, 510, 516 |
| MluNI | TGGCCA | 1 cut(s) | 602 |
| MlyI | GAGTC | 2 cut(s) | 394, 427 |
| Mox20I | TGGCCA | 1 cut(s) | 602 |
| Mph1103I | ATGCAT | 1 cut(s) | 498 |
| MscI | TGGCCA | 1 cut(s) | 602 |
| MseI | TTAA | 5 cut(s) | 291, 339, 491, 515, 805 |
| MslI | CAYNNNNRTG | 2 cut(s) | 666, 786 |
| Msp20I | TGGCCA | 1 cut(s) | 602 |
| MspR9I | CCNGG | 2 cut(s) | 451, 534 |
| MvaI | CCWGG | 2 cut(s) | 451, 534 |
| MvnI | CGCG | 1 cut(s) | 636 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 608 |
| NcoI | CCATGG | 1 cut(s) | 661 |
| NlaIII | CATG | 7 cut(s) | 142, 335, 500, 665, 671, 752, 791 |
| NlaIV | GGNNCC | 1 cut(s) | 546 |
| NmuCI | GTSAC | 2 cut(s) | 55, 116 |
| NsiI | ATGCAT | 1 cut(s) | 498 |
| NspV | TTCGAA | 1 cut(s) | 65 |
| PaqCI | CACCTGC | 1 cut(s) | 43 |
| PfeI | GAWTC | 1 cut(s) | 584 |
| PkrI | GCNGC | 1 cut(s) | 363 |
| PleI | GAGTC | 2 cut(s) | 393, 427 |
| PmaCI | CACGTG | 1 cut(s) | 424 |
| PmlI | CACGTG | 1 cut(s) | 424 |
| PpsI | GAGTC | 2 cut(s) | 393, 427 |
| Ppu21I | YACGTR | 2 cut(s) | 407, 424 |
| Psp124BI | GAGCTC | 3 cut(s) | 105, 245, 532 |
| Psp6I | CCWGG | 2 cut(s) | 449, 532 |
| PspCI | CACGTG | 1 cut(s) | 424 |
| PspEI | GGTNACC | 1 cut(s) | 55 |
| PspFI | CCCAGC | 1 cut(s) | 325 |
| PspGI | CCWGG | 2 cut(s) | 449, 532 |
| PspN4I | GGNNCC | 1 cut(s) | 546 |
| PsuI | RGATCY | 3 cut(s) | 81, 367, 544 |
| RsaI | GTAC | 1 cut(s) | 419 |
| RsaNI | GTAC | 1 cut(s) | 418 |
| RseI | CAYNNNNRTG | 2 cut(s) | 666, 786 |
| SacI | GAGCTC | 3 cut(s) | 105, 245, 532 |
| SaqAI | TTAA | 5 cut(s) | 291, 339, 491, 515, 805 |
| SatI | GCNGC | 1 cut(s) | 362 |
| SchI | GAGTC | 2 cut(s) | 394, 427 |
| ScrFI | CCNGG | 2 cut(s) | 451, 534 |
| SduI | GDGCHC | 4 cut(s) | 105, 245, 429, 532 |
| SfaNI | GCATC | 1 cut(s) | 620 |
| SfuI | TTCGAA | 1 cut(s) | 65 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 666, 786 |
| SmlI | CTYRAG | 3 cut(s) | 428, 435, 737 |
| SmoI | CTYRAG | 3 cut(s) | 428, 435, 737 |
| Sse9I | AATT | 4 cut(s) | 220, 487, 510, 516 |
| SsiI | CCGC | 1 cut(s) | 675 |
| SstI | GAGCTC | 3 cut(s) | 105, 245, 532 |
| StyD4I | CCNGG | 2 cut(s) | 449, 532 |
| StyI | CCWWGG | 1 cut(s) | 661 |
| TaaI | ACNGT | 2 cut(s) | 109, 485 |
| TaiI | ACGT | 2 cut(s) | 409, 426 |
| TaqI | TCGA | 4 cut(s) | 33, 65, 231, 412 |
| TasI | AATT | 4 cut(s) | 220, 487, 510, 516 |
| TfiI | GAWTC | 1 cut(s) | 584 |
| Tru1I | TTAA | 5 cut(s) | 291, 339, 491, 515, 805 |
| Tru9I | TTAA | 5 cut(s) | 291, 339, 491, 515, 805 |
| TscAI | CASTG | 2 cut(s) | 157, 687 |
| TseFI | GTSAC | 2 cut(s) | 55, 116 |
| TseI | GCWGC | 1 cut(s) | 361 |
| Tsp45I | GTSAC | 2 cut(s) | 55, 116 |
| TspDTI | ATGAA | 3 cut(s) | 275, 585, 597 |
| TspGWI | ACGGA | 2 cut(s) | 382, 785 |
| TspRI | CASTG | 2 cut(s) | 157, 687 |
| XapI | RAATTY | 2 cut(s) | 220, 510 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 668 |
| Zsp2I | ATGCAT | 1 cut(s) | 498 |