Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 506, 508 |
| AciI | CCGC | 6 cut(s) | 8, 348, 367, 387, 491, 504 |
| AcoI | YGGCCR | 1 cut(s) | 364 |
| AcsI | RAATTY | 1 cut(s) | 27 |
| AfaI | GTAC | 2 cut(s) | 303, 322 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 376 |
| AgsI | TTSAA | 2 cut(s) | 71, 250 |
| AhlI | ACTAGT | 1 cut(s) | 242 |
| AleI | CACNNNNGTG | 1 cut(s) | 476 |
| AluBI | AGCT | 2 cut(s) | 233, 525 |
| AluI | AGCT | 2 cut(s) | 233, 525 |
| Alw26I | GTCTC | 1 cut(s) | 285 |
| AoxI | GGCC | 1 cut(s) | 364 |
| ApeKI | GCWGC | 1 cut(s) | 95 |
| ApoI | RAATTY | 1 cut(s) | 27 |
| AspA2I | CCTAGG | 1 cut(s) | 370 |
| AspLEI | GCGC | 3 cut(s) | 138, 508, 510 |
| AsuC2I | CCSGG | 1 cut(s) | 296 |
| AsuHPI | GGTGA | 2 cut(s) | 35, 227 |
| AvrII | CCTAGG | 1 cut(s) | 370 |
| BbvI | GCAGC | 1 cut(s) | 82 |
| BccI | CCATC | 1 cut(s) | 502 |
| BceAI | ACGGC | 1 cut(s) | 379 |
| BcnI | CCSGG | 1 cut(s) | 296 |
| BcoDI | GTCTC | 1 cut(s) | 285 |
| BcuI | ACTAGT | 1 cut(s) | 242 |
| BfaI | CTAG | 4 cut(s) | 243, 257, 330, 371 |
| BisI | GCNGC | 2 cut(s) | 96, 367 |
| BlnI | CCTAGG | 1 cut(s) | 370 |
| BlsI | GCNGC | 2 cut(s) | 97, 368 |
| Bme1390I | CCNGG | 1 cut(s) | 296 |
| BmrFI | CCNGG | 1 cut(s) | 296 |
| BmrI | ACTGGG | 1 cut(s) | 438 |
| BmsI | GCATC | 1 cut(s) | 408 |
| BmuI | ACTGGG | 1 cut(s) | 438 |
| BpuMI | CCSGG | 1 cut(s) | 296 |
| Bsa29I | ATCGAT | 3 cut(s) | 121, 144, 226 |
| BsaBI | GATNNNNATC | 1 cut(s) | 422 |
| BsaJI | CCNNGG | 1 cut(s) | 370 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 472, 502 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 376 |
| Bse1I | ACTGG | 1 cut(s) | 444 |
| Bse3DI | GCAATG | 1 cut(s) | 98 |
| Bse8I | GATNNNNATC | 1 cut(s) | 422 |
| BseCI | ATCGAT | 3 cut(s) | 121, 144, 226 |
| BseDI | CCNNGG | 1 cut(s) | 370 |
| BseGI | GGATG | 2 cut(s) | 304, 357 |
| BseJI | GATNNNNATC | 1 cut(s) | 422 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 376 |
| BseMI | GCAATG | 1 cut(s) | 98 |
| BseMII | CTCAG | 1 cut(s) | 117 |
| BseNI | ACTGG | 1 cut(s) | 444 |
| BsePI | GCGCGC | 1 cut(s) | 506 |
| BseRI | GAGGAG | 2 cut(s) | 290, 390 |
| BseX3I | CGGCCG | 1 cut(s) | 364 |
| BseXI | GCAGC | 1 cut(s) | 82 |
| BseYI | CCCAGC | 1 cut(s) | 521 |
| Bsh1236I | CGCG | 2 cut(s) | 506, 508 |
| Bsh1285I | CGRYCG | 1 cut(s) | 367 |
| BshFI | GGCC | 1 cut(s) | 366 |
| BshVI | ATCGAT | 3 cut(s) | 121, 144, 226 |
| BsiEI | CGRYCG | 1 cut(s) | 367 |
| BsiSI | CCGG | 1 cut(s) | 295 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 376 |
| BsmAI | GTCTC | 1 cut(s) | 285 |
| BsmI | GAATGC | 1 cut(s) | 61 |
| BsnI | GGCC | 1 cut(s) | 366 |
| Bsp143I | GATC | 3 cut(s) | 118, 122, 381 |
| BspACI | CCGC | 6 cut(s) | 8, 348, 367, 387, 491, 504 |
| BspANI | GGCC | 1 cut(s) | 366 |
| BspCNI | CTCAG | 1 cut(s) | 118 |
| BspDI | ATCGAT | 3 cut(s) | 121, 144, 226 |
| BspFNI | CGCG | 2 cut(s) | 506, 508 |
| BsrDI | GCAATG | 1 cut(s) | 98 |
| BsrI | ACTGG | 1 cut(s) | 444 |
| BssECI | CCNNGG | 1 cut(s) | 370 |
| BssHII | GCGCGC | 1 cut(s) | 506 |
| BssMI | GATC | 3 cut(s) | 118, 122, 381 |
| BssT1I | CCWWGG | 1 cut(s) | 370 |
| Bst4CI | ACNGT | 2 cut(s) | 475, 484 |
| BstC8I | GCNNGC | 2 cut(s) | 396, 508 |
| BstDEI | CTNAG | 1 cut(s) | 126 |
| BstF5I | GGATG | 2 cut(s) | 304, 357 |
| BstFNI | CGCG | 2 cut(s) | 506, 508 |
| BstHHI | GCGC | 3 cut(s) | 138, 508, 510 |
| BstKTI | GATC | 3 cut(s) | 121, 125, 384 |
| BstMAI | GTCTC | 1 cut(s) | 285 |
| BstMBI | GATC | 3 cut(s) | 118, 122, 381 |
| BstMCI | CGRYCG | 1 cut(s) | 367 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 20 |
| BstSCI | CCNGG | 1 cut(s) | 294 |
| BstUI | CGCG | 2 cut(s) | 506, 508 |
| BstV1I | GCAGC | 1 cut(s) | 82 |
| BstZI | CGGCCG | 1 cut(s) | 364 |
| Bsu15I | ATCGAT | 3 cut(s) | 121, 144, 226 |
| BsuRI | GGCC | 1 cut(s) | 366 |
| BsuTUI | ATCGAT | 3 cut(s) | 121, 144, 226 |
| BtsCI | GGATG | 2 cut(s) | 304, 357 |
| BtsIMutI | CAGTG | 1 cut(s) | 451 |
| Cac8I | GCNNGC | 2 cut(s) | 396, 508 |
| CfoI | GCGC | 3 cut(s) | 138, 508, 510 |
| ClaI | ATCGAT | 3 cut(s) | 121, 144, 226 |
| Csp6I | GTAC | 2 cut(s) | 302, 321 |
| CviJI | RGCY | 8 cut(s) | 14, 23, 38, 95, 233, 366, 456, 525 |
| CviKI_1 | RGCY | 8 cut(s) | 14, 23, 38, 95, 233, 366, 456, 525 |
| CviQI | GTAC | 2 cut(s) | 302, 321 |
| DdeI | CTNAG | 1 cut(s) | 126 |
| DpnI | GATC | 3 cut(s) | 120, 124, 383 |
| DpnII | GATC | 3 cut(s) | 118, 122, 381 |
| EaeI | YGGCCR | 1 cut(s) | 364 |
| EagI | CGGCCG | 1 cut(s) | 364 |
| EciI | GGCGGA | 1 cut(s) | 480 |
| EclXI | CGGCCG | 1 cut(s) | 364 |
| Eco130I | CCWWGG | 1 cut(s) | 370 |
| Eco52I | CGGCCG | 1 cut(s) | 364 |
| EcoRI | GAATTC | 1 cut(s) | 27 |
| EcoT14I | CCWWGG | 1 cut(s) | 370 |
| ErhI | CCWWGG | 1 cut(s) | 370 |
| FaiI | YATR | 3 cut(s) | 160, 195, 309 |
| FauI | CCCGC | 1 cut(s) | 341 |
| Fnu4HI | GCNGC | 2 cut(s) | 96, 367 |
| FokI | GGATG | 2 cut(s) | 311, 364 |
| Fsp4HI | GCNGC | 2 cut(s) | 96, 367 |
| FspBI | CTAG | 4 cut(s) | 243, 257, 330, 371 |
| GlaI | GCGC | 3 cut(s) | 137, 507, 509 |
| GluI | GCNGC | 2 cut(s) | 96, 367 |
| GsaI | CCCAGC | 1 cut(s) | 525 |
| HaeIII | GGCC | 1 cut(s) | 366 |
| HapII | CCGG | 1 cut(s) | 295 |
| HhaI | GCGC | 3 cut(s) | 138, 508, 510 |
| Hin6I | GCGC | 3 cut(s) | 136, 506, 508 |
| HinP1I | GCGC | 3 cut(s) | 136, 506, 508 |
| HinfI | GANTC | 4 cut(s) | 278, 314, 357, 487 |
| HpaII | CCGG | 1 cut(s) | 295 |
| HphI | GGTGA | 2 cut(s) | 35, 227 |
| Hpy166II | GTNNAC | 1 cut(s) | 321 |
| Hpy188I | TCNGA | 2 cut(s) | 127, 186 |
| Hpy188III | TCNNGA | 2 cut(s) | 257, 528 |
| Hpy8I | GTNNAC | 1 cut(s) | 321 |
| Hpy99I | CGWCG | 1 cut(s) | 365 |
| HpyCH4III | ACNGT | 2 cut(s) | 475, 484 |
| HpyCH4V | TGCA | 3 cut(s) | 98, 103, 421 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 20 |
| HpyF3I | CTNAG | 1 cut(s) | 126 |
| HspAI | GCGC | 3 cut(s) | 136, 506, 508 |
| Kzo9I | GATC | 3 cut(s) | 118, 122, 381 |
| LmnI | GCTCC | 1 cut(s) | 403 |
| LpnPI | CCDG | 5 cut(s) | 9, 297, 308, 408, 457 |
| Lsp1109I | GCAGC | 1 cut(s) | 82 |
| LweI | GCATC | 1 cut(s) | 408 |
| MaeI | CTAG | 4 cut(s) | 243, 257, 330, 371 |
| MaeIII | GTNAC | 2 cut(s) | 478, 484 |
| MalI | GATC | 3 cut(s) | 120, 124, 383 |
| MboI | GATC | 3 cut(s) | 118, 122, 381 |
| MboII | GAAGA | 2 cut(s) | 128, 190 |
| MluCI | AATT | 1 cut(s) | 27 |
| MlyI | GAGTC | 2 cut(s) | 287, 481 |
| MnlI | CCTC | 6 cut(s) | 4, 121, 268, 326, 411, 467 |
| MslI | CAYNNNNRTG | 1 cut(s) | 476 |
| MspA1I | CMGCKG | 1 cut(s) | 387 |
| MspI | CCGG | 1 cut(s) | 295 |
| MspR9I | CCNGG | 1 cut(s) | 296 |
| Mva1269I | GAATGC | 1 cut(s) | 61 |
| MvnI | CGCG | 2 cut(s) | 506, 508 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 20 |
| NciI | CCSGG | 1 cut(s) | 296 |
| NdeII | GATC | 3 cut(s) | 118, 122, 381 |
| NmuCI | GTSAC | 2 cut(s) | 478, 484 |
| OliI | CACNNNNGTG | 1 cut(s) | 476 |
| PauI | GCGCGC | 1 cut(s) | 506 |
| PctI | GAATGC | 1 cut(s) | 61 |
| PfeI | GAWTC | 2 cut(s) | 314, 357 |
| PfoI | TCCNGGA | 1 cut(s) | 294 |
| PkrI | GCNGC | 2 cut(s) | 97, 368 |
| PleI | GAGTC | 2 cut(s) | 286, 481 |
| PpsI | GAGTC | 2 cut(s) | 286, 481 |
| PspFI | CCCAGC | 1 cut(s) | 521 |
| PteI | GCGCGC | 1 cut(s) | 506 |
| RsaI | GTAC | 2 cut(s) | 303, 322 |
| RsaNI | GTAC | 2 cut(s) | 302, 321 |
| RseI | CAYNNNNRTG | 1 cut(s) | 476 |
| SatI | GCNGC | 2 cut(s) | 96, 367 |
| Sau3AI | GATC | 3 cut(s) | 118, 122, 381 |
| SchI | GAGTC | 2 cut(s) | 287, 481 |
| ScrFI | CCNGG | 1 cut(s) | 296 |
| SetI | ASST | 7 cut(s) | 69, 132, 235, 240, 337, 376, 527 |
| SfaNI | GCATC | 1 cut(s) | 408 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 476 |
| SpeI | ACTAGT | 1 cut(s) | 242 |
| Sse9I | AATT | 1 cut(s) | 27 |
| SsiI | CCGC | 6 cut(s) | 8, 348, 367, 387, 491, 504 |
| SspI | AATATT | 1 cut(s) | 50 |
| SspMI | CTAG | 4 cut(s) | 243, 257, 330, 371 |
| StyD4I | CCNGG | 1 cut(s) | 294 |
| StyI | CCWWGG | 1 cut(s) | 370 |
| TaaI | ACNGT | 2 cut(s) | 475, 484 |
| TaqI | TCGA | 5 cut(s) | 121, 144, 226, 360, 497 |
| TasI | AATT | 1 cut(s) | 27 |
| TatI | WGTACW | 2 cut(s) | 301, 320 |
| TauI | GCSGC | 1 cut(s) | 369 |
| TfiI | GAWTC | 2 cut(s) | 314, 357 |
| TscAI | CASTG | 1 cut(s) | 451 |
| TseFI | GTSAC | 2 cut(s) | 478, 484 |
| TseI | GCWGC | 1 cut(s) | 95 |
| Tsp45I | GTSAC | 2 cut(s) | 478, 484 |
| TspGWI | ACGGA | 1 cut(s) | 191 |
| TspRI | CASTG | 1 cut(s) | 451 |
| XapI | RAATTY | 1 cut(s) | 27 |
| XbaI | TCTAGA | 1 cut(s) | 256 |
| XmaJI | CCTAGG | 1 cut(s) | 370 |
| XspI | CTAG | 4 cut(s) | 243, 257, 330, 371 |