ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1142 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 109 |
| Acc36I | ACCTGC | 2 cut(s) | 511, 1142 |
| AccB1I | GGYRCC | 2 cut(s) | 145, 199 |
| AccI | GTMKAC | 1 cut(s) | 982 |
| AciI | CCGC | 3 cut(s) | 17, 472, 1096 |
| AclI | AACGTT | 1 cut(s) | 1383 |
| AclWI | GGATC | 3 cut(s) | 308, 321, 1396 |
| AcoI | YGGCCR | 1 cut(s) | 114 |
| AcsI | RAATTY | 3 cut(s) | 392, 686, 1125 |
| AcuI | CTGAAG | 2 cut(s) | 279, 524 |
| AdeI | CACNNNGTG | 1 cut(s) | 516 |
| AfaI | GTAC | 3 cut(s) | 637, 792, 828 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 432, 468, 1259 |
| AgsI | TTSAA | 5 cut(s) | 210, 229, 1231, 1380, 1406 |
| AjiI | CACGTC | 1 cut(s) | 37 |
| AjnI | CCWGG | 2 cut(s) | 316, 793 |
| AluBI | AGCT | 3 cut(s) | 68, 407, 575 |
| AluI | AGCT | 3 cut(s) | 68, 407, 575 |
| Alw21I | GWGCWC | 1 cut(s) | 947 |
| Alw44I | GTGCAC | 1 cut(s) | 943 |
| AlwI | GGATC | 3 cut(s) | 308, 321, 1396 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 920 |
| Ama87I | CYCGRG | 2 cut(s) | 286, 639 |
| AoxI | GGCC | 3 cut(s) | 114, 164, 182 |
| ApaI | GGGCCC | 1 cut(s) | 168 |
| ApaLI | GTGCAC | 1 cut(s) | 943 |
| ApeKI | GCWGC | 5 cut(s) | 68, 107, 134, 440, 1039 |
| ApoI | RAATTY | 3 cut(s) | 392, 686, 1125 |
| AseI | ATTAAT | 1 cut(s) | 1325 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 688 |
| AspS9I | GGNCC | 5 cut(s) | 61, 164, 165, 183, 270 |
| AsuHPI | GGTGA | 5 cut(s) | 332, 440, 588, 749, 1166 |
| AvaI | CYCGRG | 2 cut(s) | 286, 639 |
| AvaII | GGWCC | 2 cut(s) | 61, 270 |
| AxyI | CCTNAGG | 1 cut(s) | 1257 |
| BaeGI | GKGCMC | 9 cut(s) | 128, 150, 168, 204, 247, 385, 512, 876, 947 |
| BamHI | GGATCC | 1 cut(s) | 313 |
| BanI | GGYRCC | 2 cut(s) | 145, 199 |
| BanII | GRGCYC | 3 cut(s) | 168, 262, 287 |
| BauI | CACGAG | 1 cut(s) | 489 |
| Bbv12I | GWGCWC | 1 cut(s) | 947 |
| BbvI | GCAGC | 5 cut(s) | 55, 119, 146, 427, 1051 |
| BccI | CCATC | 4 cut(s) | 115, 524, 728, 1277 |
| BceAI | ACGGC | 2 cut(s) | 101, 120 |
| BcgI | CGANNNNNNTGC | 3 cut(s) | 28, 853, 887 |
| BciT130I | CCWGG | 2 cut(s) | 318, 795 |
| BclI | TGATCA | 1 cut(s) | 925 |
| BfaI | CTAG | 7 cut(s) | 9, 65, 365, 408, 513, 576, 978 |
| BfuAI | ACCTGC | 2 cut(s) | 511, 1142 |
| BisI | GCNGC | 5 cut(s) | 69, 108, 135, 441, 1040 |
| BlsI | GCNGC | 5 cut(s) | 70, 109, 136, 442, 1041 |
| BmcAI | AGTACT | 1 cut(s) | 637 |
| Bme1390I | CCNGG | 2 cut(s) | 318, 795 |
| Bme18I | GGWCC | 2 cut(s) | 61, 270 |
| BmeT110I | CYCGRG | 2 cut(s) | 286, 639 |
| BmgBI | CACGTC | 1 cut(s) | 37 |
| BmgT120I | GGNCC | 5 cut(s) | 61, 164, 165, 183, 270 |
| BmiI | GGNNCC | 5 cut(s) | 147, 165, 166, 201, 315 |
| BmrFI | CCNGG | 2 cut(s) | 318, 795 |
| BmsI | GCATC | 4 cut(s) | 14, 592, 1228, 1327 |
| BsaWI | WCCGGW | 1 cut(s) | 598 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 519, 549, 1226, 1256 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 432, 468, 1259 |
| Bse1I | ACTGG | 1 cut(s) | 1305 |
| Bse21I | CCTNAGG | 1 cut(s) | 1257 |
| Bse3DI | GCAATG | 1 cut(s) | 1149 |
| BseBI | CCWGG | 2 cut(s) | 318, 795 |
| BseGI | GGATG | 5 cut(s) | 610, 739, 1138, 1219, 1288 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 432, 468, 1259 |
| BseMI | GCAATG | 1 cut(s) | 1149 |
| BseMII | CTCAG | 4 cut(s) | 48, 120, 344, 1248 |
| BseNI | ACTGG | 1 cut(s) | 1305 |
| BseRI | GAGGAG | 2 cut(s) | 435, 1242 |
| BseSI | GKGCMC | 9 cut(s) | 128, 150, 168, 204, 247, 385, 512, 876, 947 |
| BseX3I | CGGCCG | 1 cut(s) | 114 |
| BseXI | GCAGC | 5 cut(s) | 55, 119, 146, 427, 1051 |
| BsgI | GTGCAG | 1 cut(s) | 1170 |
| Bsh1285I | CGRYCG | 1 cut(s) | 117 |
| BshFI | GGCC | 3 cut(s) | 116, 166, 184 |
| BshNI | GGYRCC | 2 cut(s) | 145, 199 |
| BsiEI | CGRYCG | 1 cut(s) | 117 |
| BsiHKAI | GWGCWC | 1 cut(s) | 947 |
| BsiHKCI | CYCGRG | 2 cut(s) | 286, 639 |
| BsiSI | CCGG | 1 cut(s) | 599 |
| BslFI | GGGAC | 1 cut(s) | 1113 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 432, 468, 1259 |
| BsmFI | GGGAC | 1 cut(s) | 1113 |
| BsnI | GGCC | 3 cut(s) | 116, 166, 184 |
| BsoBI | CYCGRG | 2 cut(s) | 286, 639 |
| Bsp120I | GGGCCC | 1 cut(s) | 164 |
| Bsp143I | GATC | 4 cut(s) | 152, 313, 925, 1388 |
| BspACI | CCGC | 3 cut(s) | 17, 472, 1096 |
| BspANI | GGCC | 3 cut(s) | 116, 166, 184 |
| BspCNI | CTCAG | 4 cut(s) | 49, 121, 343, 1249 |
| BspLI | GGNNCC | 5 cut(s) | 147, 165, 166, 201, 315 |
| BspMI | ACCTGC | 2 cut(s) | 511, 1142 |
| BspPI | GGATC | 3 cut(s) | 308, 321, 1396 |
| BspT107I | GGYRCC | 2 cut(s) | 145, 199 |
| BsrDI | GCAATG | 1 cut(s) | 1149 |
| BsrI | ACTGG | 1 cut(s) | 1305 |
| BssMI | GATC | 4 cut(s) | 152, 313, 925, 1388 |
| BssSI | CACGAG | 1 cut(s) | 489 |
| Bst2BI | CACGAG | 1 cut(s) | 489 |
| Bst2UI | CCWGG | 2 cut(s) | 318, 795 |
| Bst4CI | ACNGT | 1 cut(s) | 279 |
| Bst6I | CTCTTC | 1 cut(s) | 764 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1148 |
| BstC8I | GCNNGC | 2 cut(s) | 73, 1149 |
| BstDEI | CTNAG | 4 cut(s) | 57, 129, 330, 1257 |
| BstF5I | GGATG | 5 cut(s) | 610, 739, 1138, 1219, 1288 |
| BstKTI | GATC | 4 cut(s) | 155, 316, 928, 1391 |
| BstMBI | GATC | 4 cut(s) | 152, 313, 925, 1388 |
| BstMCI | CGRYCG | 1 cut(s) | 117 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 113, 900, 1148, 1175 |
| BstNI | CCWGG | 2 cut(s) | 318, 795 |
| BstNSI | RCATGY | 1 cut(s) | 872 |
| BstSCI | CCNGG | 2 cut(s) | 316, 793 |
| BstSLI | GKGCMC | 9 cut(s) | 128, 150, 168, 204, 247, 385, 512, 876, 947 |
| BstV1I | GCAGC | 5 cut(s) | 55, 119, 146, 427, 1051 |
| BstX2I | RGATCY | 1 cut(s) | 313 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 280 |
| BstYI | RGATCY | 1 cut(s) | 313 |
| BstZI | CGGCCG | 1 cut(s) | 114 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1257 |
| BsuRI | GGCC | 3 cut(s) | 116, 166, 184 |
| BtrI | CACGTC | 1 cut(s) | 37 |
| BtsCI | GGATG | 5 cut(s) | 610, 739, 1138, 1219, 1288 |
| BtsI | GCAGTG | 1 cut(s) | 144 |
| BtsIMutI | CAGTG | 4 cut(s) | 126, 144, 947, 1355 |
| BveI | ACCTGC | 2 cut(s) | 511, 1142 |
| Cac8I | GCNNGC | 2 cut(s) | 73, 1149 |
| CaiI | CAGNNNCTG | 1 cut(s) | 920 |
| Cfr13I | GGNCC | 5 cut(s) | 61, 164, 165, 183, 270 |
| CseI | GACGC | 1 cut(s) | 99 |
| CsiI | ACCWGGT | 1 cut(s) | 793 |
| Csp6I | GTAC | 3 cut(s) | 636, 791, 827 |
| CviAII | CATG | 4 cut(s) | 650, 869, 1004, 1417 |
| CviQI | GTAC | 3 cut(s) | 636, 791, 827 |
| DdeI | CTNAG | 4 cut(s) | 57, 129, 330, 1257 |
| DpnI | GATC | 4 cut(s) | 154, 315, 927, 1390 |
| DpnII | GATC | 4 cut(s) | 152, 313, 925, 1388 |
| DraI | TTTAAA | 2 cut(s) | 402, 1026 |
| DraIII | CACNNNGTG | 1 cut(s) | 516 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 109 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 109 |
| EaeI | YGGCCR | 1 cut(s) | 114 |
| EagI | CGGCCG | 1 cut(s) | 114 |
| Eam1104I | CTCTTC | 1 cut(s) | 764 |
| EarI | CTCTTC | 1 cut(s) | 764 |
| EciI | GGCGGA | 1 cut(s) | 487 |
| EclXI | CGGCCG | 1 cut(s) | 114 |
| Eco24I | GRGCYC | 3 cut(s) | 168, 262, 287 |
| Eco47I | GGWCC | 2 cut(s) | 61, 270 |
| Eco52I | CGGCCG | 1 cut(s) | 114 |
| Eco57I | CTGAAG | 2 cut(s) | 279, 524 |
| Eco81I | CCTNAGG | 1 cut(s) | 1257 |
| Eco88I | CYCGRG | 2 cut(s) | 286, 639 |
| EcoO109I | RGGNCCY | 2 cut(s) | 61, 164 |
| EcoRII | CCWGG | 2 cut(s) | 316, 793 |
| EcoT22I | ATGCAT | 1 cut(s) | 1418 |
| EcoT38I | GRGCYC | 3 cut(s) | 168, 262, 287 |
| FaeI | CATG | 4 cut(s) | 653, 872, 1007, 1420 |
| FaqI | GGGAC | 1 cut(s) | 1113 |
| FatI | CATG | 4 cut(s) | 649, 868, 1003, 1416 |
| FauI | CCCGC | 1 cut(s) | 1089 |
| FbaI | TGATCA | 1 cut(s) | 925 |
| FblI | GTMKAC | 1 cut(s) | 982 |
| Fnu4HI | GCNGC | 5 cut(s) | 69, 108, 135, 441, 1040 |
| FokI | GGATG | 5 cut(s) | 617, 746, 1145, 1206, 1295 |
| FriOI | GRGCYC | 3 cut(s) | 168, 262, 287 |
| Fsp4HI | GCNGC | 5 cut(s) | 69, 108, 135, 441, 1040 |
| FspBI | CTAG | 7 cut(s) | 9, 65, 365, 408, 513, 576, 978 |
| GluI | GCNGC | 5 cut(s) | 69, 108, 135, 441, 1040 |
| HaeIII | GGCC | 3 cut(s) | 116, 166, 184 |
| HapII | CCGG | 1 cut(s) | 599 |
| HgaI | GACGC | 1 cut(s) | 99 |
| Hin1II | CATG | 4 cut(s) | 653, 872, 1007, 1420 |
| HincII | GTYRAC | 1 cut(s) | 1059 |
| HindII | GTYRAC | 1 cut(s) | 1059 |
| HinfI | GANTC | 4 cut(s) | 323, 911, 917, 1182 |
| HpaII | CCGG | 1 cut(s) | 599 |
| HphI | GGTGA | 5 cut(s) | 332, 440, 588, 749, 1166 |
| Hpy166II | GTNNAC | 4 cut(s) | 92, 945, 983, 1059 |
| Hpy188I | TCNGA | 5 cut(s) | 58, 333, 420, 504, 916 |
| Hpy188III | TCNNGA | 2 cut(s) | 1256, 1280 |
| Hpy8I | GTNNAC | 4 cut(s) | 92, 945, 983, 1059 |
| Hpy99I | CGWCG | 3 cut(s) | 41, 106, 115 |
| HpyAV | CCTTC | 6 cut(s) | 35, 362, 468, 499, 555, 1225 |
| HpyCH4III | ACNGT | 1 cut(s) | 279 |
| HpyCH4IV | ACGT | 3 cut(s) | 36, 1296, 1383 |
| HpyCH4V | TGCA | 9 cut(s) | 83, 583, 945, 967, 1039, 1151, 1178, 1219, 1416 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 113, 900, 1148, 1175 |
| HpyF3I | CTNAG | 4 cut(s) | 57, 129, 330, 1257 |
| HpySE526I | ACGT | 3 cut(s) | 36, 1296, 1383 |
| Hsp92II | CATG | 4 cut(s) | 653, 872, 1007, 1420 |
| Ksp22I | TGATCA | 1 cut(s) | 925 |
| Kzo9I | GATC | 4 cut(s) | 152, 313, 925, 1388 |
| LmnI | GCTCC | 1 cut(s) | 448 |
| Lsp1109I | GCAGC | 5 cut(s) | 55, 119, 146, 427, 1051 |
| LweI | GCATC | 4 cut(s) | 14, 592, 1228, 1327 |
| MabI | ACCWGGT | 1 cut(s) | 793 |
| MaeI | CTAG | 7 cut(s) | 9, 65, 365, 408, 513, 576, 978 |
| MaeII | ACGT | 3 cut(s) | 36, 1296, 1383 |
| MaeIII | GTNAC | 1 cut(s) | 32 |
| MalI | GATC | 4 cut(s) | 154, 315, 927, 1390 |
| MboI | GATC | 4 cut(s) | 152, 313, 925, 1388 |
| MboII | GAAGA | 3 cut(s) | 285, 781, 817 |
| MfeI | CAATTG | 3 cut(s) | 169, 587, 846 |
| MflI | RGATCY | 1 cut(s) | 313 |
| MlyI | GAGTC | 2 cut(s) | 926, 1176 |
| MmeI | TCCRAC | 2 cut(s) | 505, 1366 |
| Mph1103I | ATGCAT | 1 cut(s) | 1418 |
| MroXI | GAANNNNTTC | 1 cut(s) | 688 |
| MseI | TTAA | 6 cut(s) | 401, 696, 1025, 1173, 1269, 1325 |
| MspI | CCGG | 1 cut(s) | 599 |
| MspR9I | CCNGG | 2 cut(s) | 318, 795 |
| MunI | CAATTG | 3 cut(s) | 169, 587, 846 |
| MvaI | CCWGG | 2 cut(s) | 318, 795 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 113, 900, 1148, 1175 |
| NdeII | GATC | 4 cut(s) | 152, 313, 925, 1388 |
| NlaIII | CATG | 4 cut(s) | 653, 872, 1007, 1420 |
| NlaIV | GGNNCC | 5 cut(s) | 147, 165, 166, 201, 315 |
| NmuCI | GTSAC | 1 cut(s) | 32 |
| NsiI | ATGCAT | 1 cut(s) | 1418 |
| NspI | RCATGY | 1 cut(s) | 872 |
| PaeR7I | CTCGAG | 1 cut(s) | 639 |
| PaqCI | CACCTGC | 1 cut(s) | 1142 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 107 |
| PdmI | GAANNNNTTC | 1 cut(s) | 688 |
| PfeI | GAWTC | 2 cut(s) | 323, 911 |
| PkrI | GCNGC | 5 cut(s) | 70, 109, 136, 442, 1041 |
| PleI | GAGTC | 2 cut(s) | 925, 1176 |
| PpsI | GAGTC | 2 cut(s) | 925, 1176 |
| PpuMI | RGGWCCY | 1 cut(s) | 61 |
| PshBI | ATTAAT | 1 cut(s) | 1325 |
| Psp1406I | AACGTT | 1 cut(s) | 1383 |
| Psp5II | RGGWCCY | 1 cut(s) | 61 |
| Psp6I | CCWGG | 2 cut(s) | 316, 793 |
| PspGI | CCWGG | 2 cut(s) | 316, 793 |
| PspN4I | GGNNCC | 5 cut(s) | 147, 165, 166, 201, 315 |
| PspOMI | GGGCCC | 1 cut(s) | 164 |
| PspPI | GGNCC | 5 cut(s) | 61, 164, 165, 183, 270 |
| PspPPI | RGGWCCY | 1 cut(s) | 61 |
| PspXI | VCTCGAGB | 1 cut(s) | 639 |
| PstNI | CAGNNNCTG | 1 cut(s) | 920 |
| PsuI | RGATCY | 1 cut(s) | 313 |
| RsaI | GTAC | 3 cut(s) | 637, 792, 828 |
| RsaNI | GTAC | 3 cut(s) | 636, 791, 827 |
| SaqAI | TTAA | 6 cut(s) | 401, 696, 1025, 1173, 1269, 1325 |
| SatI | GCNGC | 5 cut(s) | 69, 108, 135, 441, 1040 |
| Sau3AI | GATC | 4 cut(s) | 152, 313, 925, 1388 |
| Sau96I | GGNCC | 5 cut(s) | 61, 164, 165, 183, 270 |
| ScaI | AGTACT | 1 cut(s) | 637 |
| SchI | GAGTC | 2 cut(s) | 926, 1176 |
| ScrFI | CCNGG | 2 cut(s) | 318, 795 |
| SexAI | ACCWGGT | 1 cut(s) | 793 |
| SfaNI | GCATC | 4 cut(s) | 14, 592, 1228, 1327 |
| Sfr274I | CTCGAG | 1 cut(s) | 639 |
| SinI | GGWCC | 2 cut(s) | 61, 270 |
| SlaI | CTCGAG | 1 cut(s) | 639 |
| SmlI | CTYRAG | 1 cut(s) | 639 |
| SmoI | CTYRAG | 1 cut(s) | 639 |
| SsiI | CCGC | 3 cut(s) | 17, 472, 1096 |
| SspMI | CTAG | 7 cut(s) | 9, 65, 365, 408, 513, 576, 978 |
| StyD4I | CCNGG | 2 cut(s) | 316, 793 |
| TaaI | ACNGT | 1 cut(s) | 279 |
| TaiI | ACGT | 3 cut(s) | 39, 1299, 1386 |
| TaqI | TCGA | 3 cut(s) | 39, 640, 722 |
| TatI | WGTACW | 1 cut(s) | 635 |
| TfiI | GAWTC | 2 cut(s) | 323, 911 |
| Tru1I | TTAA | 6 cut(s) | 401, 696, 1025, 1173, 1269, 1325 |
| Tru9I | TTAA | 6 cut(s) | 401, 696, 1025, 1173, 1269, 1325 |
| TscAI | CASTG | 4 cut(s) | 133, 144, 947, 1355 |
| TseFI | GTSAC | 1 cut(s) | 32 |
| TseI | GCWGC | 5 cut(s) | 68, 107, 134, 440, 1039 |
| Tsp45I | GTSAC | 1 cut(s) | 32 |
| TspDTI | ATGAA | 5 cut(s) | 542, 585, 600, 750, 1020 |
| TspGWI | ACGGA | 2 cut(s) | 400, 1409 |
| TspRI | CASTG | 4 cut(s) | 133, 144, 947, 1355 |
| VneI | GTGCAC | 1 cut(s) | 943 |
| VpaK11BI | GGWCC | 2 cut(s) | 61, 270 |
| VspI | ATTAAT | 1 cut(s) | 1325 |
| XapI | RAATTY | 3 cut(s) | 392, 686, 1125 |
| XceI | RCATGY | 1 cut(s) | 872 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1340 |
| XhoI | CTCGAG | 1 cut(s) | 639 |
| XmiI | GTMKAC | 1 cut(s) | 982 |
| XmnI | GAANNNNTTC | 1 cut(s) | 688 |
| XspI | CTAG | 7 cut(s) | 9, 65, 365, 408, 513, 576, 978 |
| ZrmI | AGTACT | 1 cut(s) | 637 |
| Zsp2I | ATGCAT | 1 cut(s) | 1418 |