Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 2 - 80 | 3.2e-12 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 83, 86 |
| AcuI | CTGAAG | 1 cut(s) | 122 |
| AfaI | GTAC | 3 cut(s) | 322, 328, 362 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 127, 310 |
| AflII | CTTAAG | 1 cut(s) | 163 |
| AgsI | TTSAA | 1 cut(s) | 71 |
| AhlI | ACTAGT | 1 cut(s) | 323 |
| AjnI | CCWGG | 1 cut(s) | 294 |
| AluBI | AGCT | 1 cut(s) | 221 |
| AluI | AGCT | 1 cut(s) | 221 |
| Alw26I | GTCTC | 1 cut(s) | 398 |
| Ama87I | CYCGRG | 1 cut(s) | 330 |
| AoxI | GGCC | 1 cut(s) | 25 |
| AseI | ATTAAT | 1 cut(s) | 381 |
| AspLEI | GCGC | 1 cut(s) | 235 |
| AspS9I | GGNCC | 1 cut(s) | 118 |
| AsuHPI | GGTGA | 3 cut(s) | 35, 347, 413 |
| AvaI | CYCGRG | 1 cut(s) | 330 |
| AvaII | GGWCC | 1 cut(s) | 118 |
| BciT130I | CCWGG | 1 cut(s) | 296 |
| BcoDI | GTCTC | 1 cut(s) | 398 |
| BcuI | ACTAGT | 1 cut(s) | 323 |
| BfaI | CTAG | 3 cut(s) | 8, 243, 324 |
| BfrI | CTTAAG | 1 cut(s) | 163 |
| BisI | GCNGC | 1 cut(s) | 84 |
| BlsI | GCNGC | 1 cut(s) | 85 |
| BmcAI | AGTACT | 1 cut(s) | 328 |
| Bme1390I | CCNGG | 1 cut(s) | 296 |
| Bme18I | GGWCC | 1 cut(s) | 118 |
| BmeT110I | CYCGRG | 1 cut(s) | 330 |
| BmgT120I | GGNCC | 1 cut(s) | 118 |
| BmiI | GGNNCC | 1 cut(s) | 282 |
| BmrFI | CCNGG | 1 cut(s) | 296 |
| BmrI | ACTGGG | 1 cut(s) | 405 |
| BmuI | ACTGGG | 1 cut(s) | 405 |
| BsaJI | CCNNGG | 2 cut(s) | 46, 354 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 127, 310 |
| Bse1I | ACTGG | 1 cut(s) | 411 |
| Bse3DI | GCAATG | 1 cut(s) | 21 |
| BseBI | CCWGG | 1 cut(s) | 296 |
| BseDI | CCNNGG | 2 cut(s) | 46, 354 |
| BseGI | GGATG | 1 cut(s) | 304 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 127, 310 |
| BseMI | GCAATG | 1 cut(s) | 21 |
| BseNI | ACTGG | 1 cut(s) | 411 |
| BsgI | GTGCAG | 1 cut(s) | 81 |
| BshFI | GGCC | 1 cut(s) | 27 |
| BsiHKCI | CYCGRG | 1 cut(s) | 330 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 127, 310 |
| BsmAI | GTCTC | 1 cut(s) | 398 |
| BsnI | GGCC | 1 cut(s) | 27 |
| BsoBI | CYCGRG | 1 cut(s) | 330 |
| Bsp1407I | TGTACA | 1 cut(s) | 360 |
| BspACI | CCGC | 2 cut(s) | 83, 86 |
| BspANI | GGCC | 1 cut(s) | 27 |
| BspLI | GGNNCC | 1 cut(s) | 282 |
| BspTI | CTTAAG | 1 cut(s) | 163 |
| BsrDI | GCAATG | 1 cut(s) | 21 |
| BsrGI | TGTACA | 1 cut(s) | 360 |
| BsrI | ACTGG | 1 cut(s) | 411 |
| BssECI | CCNNGG | 2 cut(s) | 46, 354 |
| BssT1I | CCWWGG | 1 cut(s) | 46 |
| Bst2UI | CCWGG | 1 cut(s) | 296 |
| Bst6I | CTCTTC | 1 cut(s) | 270 |
| BstAFI | CTTAAG | 1 cut(s) | 163 |
| BstAUI | TGTACA | 1 cut(s) | 360 |
| BstC8I | GCNNGC | 2 cut(s) | 21, 25 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 125, 308 |
| BstF5I | GGATG | 1 cut(s) | 304 |
| BstHHI | GCGC | 1 cut(s) | 235 |
| BstMAI | GTCTC | 1 cut(s) | 398 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 20, 239 |
| BstNI | CCWGG | 1 cut(s) | 296 |
| BstSCI | CCNGG | 1 cut(s) | 294 |
| BsuRI | GGCC | 1 cut(s) | 27 |
| BtsCI | GGATG | 1 cut(s) | 304 |
| BtsIMutI | CAGTG | 1 cut(s) | 98 |
| Cac8I | GCNNGC | 2 cut(s) | 21, 25 |
| CfoI | GCGC | 1 cut(s) | 235 |
| Cfr13I | GGNCC | 1 cut(s) | 118 |
| Csp6I | GTAC | 3 cut(s) | 321, 327, 361 |
| CviAII | CATG | 1 cut(s) | 52 |
| CviJI | RGCY | 3 cut(s) | 27, 170, 221 |
| CviKI_1 | RGCY | 3 cut(s) | 27, 170, 221 |
| CviQI | GTAC | 3 cut(s) | 321, 327, 361 |
| Eam1104I | CTCTTC | 1 cut(s) | 270 |
| EarI | CTCTTC | 1 cut(s) | 270 |
| Eco130I | CCWWGG | 1 cut(s) | 46 |
| Eco147I | AGGCCT | 1 cut(s) | 27 |
| Eco47I | GGWCC | 1 cut(s) | 118 |
| Eco57I | CTGAAG | 1 cut(s) | 122 |
| Eco88I | CYCGRG | 1 cut(s) | 330 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 125, 308 |
| EcoO109I | RGGNCCY | 1 cut(s) | 118 |
| EcoRII | CCWGG | 1 cut(s) | 294 |
| EcoT14I | CCWWGG | 1 cut(s) | 46 |
| ErhI | CCWWGG | 1 cut(s) | 46 |
| FaeI | CATG | 1 cut(s) | 55 |
| FaiI | YATR | 4 cut(s) | 53, 225, 345, 347 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 198, 230 |
| FatI | CATG | 1 cut(s) | 51 |
| Fnu4HI | GCNGC | 1 cut(s) | 84 |
| FokI | GGATG | 1 cut(s) | 311 |
| Fsp4HI | GCNGC | 1 cut(s) | 84 |
| FspBI | CTAG | 3 cut(s) | 8, 243, 324 |
| GlaI | GCGC | 1 cut(s) | 234 |
| GluI | GCNGC | 1 cut(s) | 84 |
| HaeIII | GGCC | 1 cut(s) | 27 |
| HhaI | GCGC | 1 cut(s) | 235 |
| Hin1II | CATG | 1 cut(s) | 55 |
| Hin6I | GCGC | 1 cut(s) | 233 |
| HinP1I | GCGC | 1 cut(s) | 233 |
| HincII | GTYRAC | 1 cut(s) | 64 |
| HindII | GTYRAC | 1 cut(s) | 64 |
| HinfI | GANTC | 3 cut(s) | 40, 314, 406 |
| HphI | GGTGA | 3 cut(s) | 35, 347, 413 |
| Hpy166II | GTNNAC | 3 cut(s) | 64, 188, 361 |
| Hpy188I | TCNGA | 1 cut(s) | 127 |
| Hpy188III | TCNNGA | 1 cut(s) | 203 |
| Hpy8I | GTNNAC | 3 cut(s) | 64, 188, 361 |
| HpyAV | CCTTC | 3 cut(s) | 97, 186, 332 |
| HpyCH4V | TGCA | 1 cut(s) | 98 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 20, 239 |
| Hsp92II | CATG | 1 cut(s) | 55 |
| HspAI | GCGC | 1 cut(s) | 233 |
| LpnPI | CCDG | 5 cut(s) | 9, 234, 281, 297, 308 |
| MaeI | CTAG | 3 cut(s) | 8, 243, 324 |
| MaeIII | GTNAC | 1 cut(s) | 91 |
| MboII | GAAGA | 3 cut(s) | 287, 363, 366 |
| MlyI | GAGTC | 1 cut(s) | 400 |
| MnlI | CCTC | 8 cut(s) | 109, 121, 139, 271, 304, 314, 326, 364 |
| MseI | TTAA | 2 cut(s) | 164, 381 |
| MspCI | CTTAAG | 1 cut(s) | 163 |
| MspR9I | CCNGG | 1 cut(s) | 296 |
| MvaI | CCWGG | 1 cut(s) | 296 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 20, 239 |
| NlaIII | CATG | 1 cut(s) | 55 |
| NlaIV | GGNNCC | 1 cut(s) | 282 |
| PaeR7I | CTCGAG | 1 cut(s) | 330 |
| PceI | AGGCCT | 1 cut(s) | 27 |
| PfeI | GAWTC | 2 cut(s) | 40, 314 |
| PfoI | TCCNGGA | 1 cut(s) | 294 |
| PkrI | GCNGC | 1 cut(s) | 85 |
| PleI | GAGTC | 1 cut(s) | 400 |
| PpsI | GAGTC | 1 cut(s) | 400 |
| PpuMI | RGGWCCY | 1 cut(s) | 118 |
| PshBI | ATTAAT | 1 cut(s) | 381 |
| Psp5II | RGGWCCY | 1 cut(s) | 118 |
| Psp6I | CCWGG | 1 cut(s) | 294 |
| PspGI | CCWGG | 1 cut(s) | 294 |
| PspN4I | GGNNCC | 1 cut(s) | 282 |
| PspPI | GGNCC | 1 cut(s) | 118 |
| PspPPI | RGGWCCY | 1 cut(s) | 118 |
| PspXI | VCTCGAGB | 1 cut(s) | 330 |
| RsaI | GTAC | 3 cut(s) | 322, 328, 362 |
| RsaNI | GTAC | 3 cut(s) | 321, 327, 361 |
| SaqAI | TTAA | 2 cut(s) | 164, 381 |
| SatI | GCNGC | 1 cut(s) | 84 |
| Sau96I | GGNCC | 1 cut(s) | 118 |
| ScaI | AGTACT | 1 cut(s) | 328 |
| SchI | GAGTC | 1 cut(s) | 400 |
| ScrFI | CCNGG | 1 cut(s) | 296 |
| SetI | ASST | 8 cut(s) | 123, 132, 223, 240, 253, 286, 337, 343 |
| Sfr274I | CTCGAG | 1 cut(s) | 330 |
| SinI | GGWCC | 1 cut(s) | 118 |
| SlaI | CTCGAG | 1 cut(s) | 330 |
| SmlI | CTYRAG | 2 cut(s) | 163, 330 |
| SmoI | CTYRAG | 2 cut(s) | 163, 330 |
| SpeI | ACTAGT | 1 cut(s) | 323 |
| SseBI | AGGCCT | 1 cut(s) | 27 |
| SsiI | CCGC | 2 cut(s) | 83, 86 |
| SspI | AATATT | 2 cut(s) | 139, 388 |
| SspMI | CTAG | 3 cut(s) | 8, 243, 324 |
| StuI | AGGCCT | 1 cut(s) | 27 |
| StyD4I | CCNGG | 1 cut(s) | 294 |
| StyI | CCWWGG | 1 cut(s) | 46 |
| TaqI | TCGA | 2 cut(s) | 331, 391 |
| TatI | WGTACW | 3 cut(s) | 320, 326, 360 |
| TauI | GCSGC | 1 cut(s) | 86 |
| TfiI | GAWTC | 2 cut(s) | 40, 314 |
| Tru1I | TTAA | 2 cut(s) | 164, 381 |
| Tru9I | TTAA | 2 cut(s) | 164, 381 |
| TscAI | CASTG | 1 cut(s) | 105 |
| TspRI | CASTG | 1 cut(s) | 105 |
| Vha464I | CTTAAG | 1 cut(s) | 163 |
| VpaK11BI | GGWCC | 1 cut(s) | 118 |
| VspI | ATTAAT | 1 cut(s) | 381 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 125, 308 |
| XhoI | CTCGAG | 1 cut(s) | 330 |
| XspI | CTAG | 3 cut(s) | 8, 243, 324 |
| ZrmI | AGTACT | 1 cut(s) | 328 |