Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 790 |
| AccB1I | GGYRCC | 1 cut(s) | 208 |
| AclWI | GGATC | 3 cut(s) | 8, 26, 404 |
| AcuI | CTGAAG | 1 cut(s) | 90 |
| AdeI | CACNNNGTG | 1 cut(s) | 841 |
| AfaI | GTAC | 2 cut(s) | 317, 956 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 957 |
| AgsI | TTSAA | 5 cut(s) | 140, 571, 583, 889, 1009 |
| AhlI | ACTAGT | 1 cut(s) | 907 |
| AjnI | CCWGG | 1 cut(s) | 539 |
| AleI | CACNNNNGTG | 1 cut(s) | 908 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 167, 199 |
| Alw21I | GWGCWC | 2 cut(s) | 335, 837 |
| Alw26I | GTCTC | 1 cut(s) | 342 |
| AlwI | GGATC | 3 cut(s) | 8, 26, 404 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 268 |
| Ama87I | CYCGRG | 1 cut(s) | 413 |
| AoxI | GGCC | 3 cut(s) | 44, 449, 959 |
| ApeKI | GCWGC | 2 cut(s) | 239, 242 |
| AspA2I | CCTAGG | 1 cut(s) | 547 |
| AsuHPI | GGTGA | 3 cut(s) | 396, 800, 853 |
| AvaI | CYCGRG | 1 cut(s) | 413 |
| AvrII | CCTAGG | 1 cut(s) | 547 |
| BanI | GGYRCC | 1 cut(s) | 208 |
| BbsI | GAAGAC | 2 cut(s) | 387, 1000 |
| Bbv12I | GWGCWC | 2 cut(s) | 335, 837 |
| BbvI | GCAGC | 2 cut(s) | 226, 229 |
| BccI | CCATC | 5 cut(s) | 65, 88, 662, 728, 838 |
| BciT130I | CCWGG | 1 cut(s) | 541 |
| BciVI | GTATCC | 1 cut(s) | 468 |
| BclI | TGATCA | 1 cut(s) | 195 |
| BcoDI | GTCTC | 1 cut(s) | 342 |
| BcuI | ACTAGT | 1 cut(s) | 907 |
| BfaI | CTAG | 4 cut(s) | 246, 548, 689, 908 |
| BfuAI | ACCTGC | 1 cut(s) | 790 |
| BfuI | GTATCC | 1 cut(s) | 468 |
| BisI | GCNGC | 2 cut(s) | 240, 243 |
| BlnI | CCTAGG | 1 cut(s) | 547 |
| BlsI | GCNGC | 2 cut(s) | 241, 244 |
| Bme1390I | CCNGG | 1 cut(s) | 541 |
| BmeT110I | CYCGRG | 1 cut(s) | 413 |
| BmiI | GGNNCC | 2 cut(s) | 210, 545 |
| BmrFI | CCNGG | 1 cut(s) | 541 |
| BpiI | GAAGAC | 2 cut(s) | 387, 1000 |
| BpmI | CTGGAG | 3 cut(s) | 81, 290, 447 |
| Bpu10I | CCTNAGC | 1 cut(s) | 36 |
| BpuEI | CTTGAG | 1 cut(s) | 678 |
| Bsa29I | ATCGAT | 2 cut(s) | 83, 933 |
| BsaJI | CCNNGG | 3 cut(s) | 202, 414, 547 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 167, 197 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 957 |
| Bse1I | ACTGG | 2 cut(s) | 98, 356 |
| Bse3DI | GCAATG | 1 cut(s) | 817 |
| BseBI | CCWGG | 1 cut(s) | 541 |
| BseCI | ATCGAT | 2 cut(s) | 83, 933 |
| BseDI | CCNNGG | 3 cut(s) | 202, 414, 547 |
| BseGI | GGATG | 3 cut(s) | 24, 673, 1029 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 957 |
| BseMI | GCAATG | 1 cut(s) | 817 |
| BseMII | CTCAG | 6 cut(s) | 27, 444, 509, 650, 867, 1012 |
| BseNI | ACTGG | 2 cut(s) | 98, 356 |
| BseRI | GAGGAG | 1 cut(s) | 938 |
| BseXI | GCAGC | 2 cut(s) | 226, 229 |
| BseYI | CCCAGC | 2 cut(s) | 397, 969 |
| BshFI | GGCC | 3 cut(s) | 46, 451, 961 |
| BshNI | GGYRCC | 1 cut(s) | 208 |
| BshVI | ATCGAT | 2 cut(s) | 83, 933 |
| BsiHKAI | GWGCWC | 2 cut(s) | 335, 837 |
| BsiHKCI | CYCGRG | 1 cut(s) | 413 |
| BslFI | GGGAC | 1 cut(s) | 380 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 957 |
| BsmAI | GTCTC | 1 cut(s) | 342 |
| BsmFI | GGGAC | 1 cut(s) | 380 |
| BsmI | GAATGC | 1 cut(s) | 169 |
| BsnI | GGCC | 3 cut(s) | 46, 451, 961 |
| BsoBI | CYCGRG | 1 cut(s) | 413 |
| Bsp1286I | GDGCHC | 2 cut(s) | 335, 837 |
| Bsp143I | GATC | 6 cut(s) | 13, 31, 195, 285, 409, 930 |
| Bsp19I | CCATGG | 1 cut(s) | 202 |
| BspANI | GGCC | 3 cut(s) | 46, 451, 961 |
| BspCNI | CTCAG | 6 cut(s) | 28, 445, 508, 649, 866, 1011 |
| BspDI | ATCGAT | 2 cut(s) | 83, 933 |
| BspLI | GGNNCC | 2 cut(s) | 210, 545 |
| BspMI | ACCTGC | 1 cut(s) | 790 |
| BspPI | GGATC | 3 cut(s) | 8, 26, 404 |
| BspT107I | GGYRCC | 1 cut(s) | 208 |
| BsrDI | GCAATG | 1 cut(s) | 817 |
| BsrI | ACTGG | 2 cut(s) | 98, 356 |
| BssECI | CCNNGG | 3 cut(s) | 202, 414, 547 |
| BssMI | GATC | 6 cut(s) | 13, 31, 195, 285, 409, 930 |
| BssT1I | CCWWGG | 2 cut(s) | 202, 547 |
| Bst2UI | CCWGG | 1 cut(s) | 541 |
| Bst4CI | ACNGT | 1 cut(s) | 685 |
| Bst6I | CTCTTC | 2 cut(s) | 420, 716 |
| BstC8I | GCNNGC | 3 cut(s) | 169, 513, 554 |
| BstDEI | CTNAG | 6 cut(s) | 36, 453, 495, 636, 853, 998 |
| BstDSI | CCRYGG | 1 cut(s) | 202 |
| BstF5I | GGATG | 3 cut(s) | 24, 673, 1029 |
| BstKTI | GATC | 6 cut(s) | 16, 34, 198, 288, 412, 933 |
| BstMAI | GTCTC | 1 cut(s) | 342 |
| BstMBI | GATC | 6 cut(s) | 13, 31, 195, 285, 409, 930 |
| BstNI | CCWGG | 1 cut(s) | 541 |
| BstNSI | RCATGY | 2 cut(s) | 171, 483 |
| BstSCI | CCNGG | 1 cut(s) | 539 |
| BstV1I | GCAGC | 2 cut(s) | 226, 229 |
| BstV2I | GAAGAC | 2 cut(s) | 387, 1000 |
| BstX2I | RGATCY | 1 cut(s) | 31 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 668 |
| BstYI | RGATCY | 1 cut(s) | 31 |
| Bsu15I | ATCGAT | 2 cut(s) | 83, 933 |
| BsuI | GTATCC | 1 cut(s) | 468 |
| BsuRI | GGCC | 3 cut(s) | 46, 451, 961 |
| BsuTUI | ATCGAT | 2 cut(s) | 83, 933 |
| BtgI | CCRYGG | 1 cut(s) | 202 |
| BtsCI | GGATG | 3 cut(s) | 24, 673, 1029 |
| BveI | ACCTGC | 1 cut(s) | 790 |
| Cac8I | GCNNGC | 3 cut(s) | 169, 513, 554 |
| CaiI | CAGNNNCTG | 1 cut(s) | 268 |
| ClaI | ATCGAT | 2 cut(s) | 83, 933 |
| Csp6I | GTAC | 2 cut(s) | 316, 955 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 652, 687 |
| CviAII | CATG | 4 cut(s) | 168, 203, 435, 480 |
| CviQI | GTAC | 2 cut(s) | 316, 955 |
| DdeI | CTNAG | 6 cut(s) | 36, 453, 495, 636, 853, 998 |
| DpnI | GATC | 6 cut(s) | 15, 33, 197, 287, 411, 932 |
| DpnII | GATC | 6 cut(s) | 13, 31, 195, 285, 409, 930 |
| DraIII | CACNNNGTG | 1 cut(s) | 841 |
| Eam1104I | CTCTTC | 2 cut(s) | 420, 716 |
| EarI | CTCTTC | 2 cut(s) | 420, 716 |
| Eco130I | CCWWGG | 2 cut(s) | 202, 547 |
| Eco147I | AGGCCT | 1 cut(s) | 961 |
| Eco57I | CTGAAG | 1 cut(s) | 90 |
| Eco88I | CYCGRG | 1 cut(s) | 413 |
| EcoRII | CCWGG | 1 cut(s) | 539 |
| EcoT14I | CCWWGG | 2 cut(s) | 202, 547 |
| EcoT22I | ATGCAT | 1 cut(s) | 169 |
| ErhI | CCWWGG | 2 cut(s) | 202, 547 |
| FaeI | CATG | 4 cut(s) | 171, 206, 438, 483 |
| FaqI | GGGAC | 1 cut(s) | 380 |
| FatI | CATG | 4 cut(s) | 167, 202, 434, 479 |
| FbaI | TGATCA | 1 cut(s) | 195 |
| Fnu4HI | GCNGC | 2 cut(s) | 240, 243 |
| FokI | GGATG | 3 cut(s) | 11, 680, 1016 |
| Fsp4HI | GCNGC | 2 cut(s) | 240, 243 |
| FspBI | CTAG | 4 cut(s) | 246, 548, 689, 908 |
| GluI | GCNGC | 2 cut(s) | 240, 243 |
| GsaI | CCCAGC | 2 cut(s) | 401, 973 |
| GsuI | CTGGAG | 3 cut(s) | 81, 290, 447 |
| HaeIII | GGCC | 3 cut(s) | 46, 451, 961 |
| Hin1II | CATG | 4 cut(s) | 171, 206, 438, 483 |
| HincII | GTYRAC | 1 cut(s) | 1024 |
| HindII | GTYRAC | 1 cut(s) | 1024 |
| HindIII | AAGCTT | 1 cut(s) | 509 |
| HinfI | GANTC | 6 cut(s) | 232, 606, 745, 851, 985, 996 |
| HphI | GGTGA | 3 cut(s) | 396, 800, 853 |
| Hpy166II | GTNNAC | 2 cut(s) | 850, 1024 |
| Hpy188I | TCNGA | 4 cut(s) | 152, 347, 605, 856 |
| Hpy188III | TCNNGA | 8 cut(s) | 35, 269, 289, 413, 464, 497, 695, 1009 |
| Hpy8I | GTNNAC | 2 cut(s) | 850, 1024 |
| HpyAV | CCTTC | 4 cut(s) | 65, 134, 349, 639 |
| HpyCH4III | ACNGT | 1 cut(s) | 685 |
| HpyCH4V | TGCA | 5 cut(s) | 109, 167, 171, 260, 799 |
| HpyF3I | CTNAG | 6 cut(s) | 36, 453, 495, 636, 853, 998 |
| Hsp92II | CATG | 4 cut(s) | 171, 206, 438, 483 |
| Ksp22I | TGATCA | 1 cut(s) | 195 |
| Kzo9I | GATC | 6 cut(s) | 13, 31, 195, 285, 409, 930 |
| LmnI | GCTCC | 4 cut(s) | 228, 543, 807, 925 |
| Lsp1109I | GCAGC | 2 cut(s) | 226, 229 |
| MaeI | CTAG | 4 cut(s) | 246, 548, 689, 908 |
| MaeIII | GTNAC | 1 cut(s) | 100 |
| MalI | GATC | 6 cut(s) | 15, 33, 197, 287, 411, 932 |
| MboI | GATC | 6 cut(s) | 13, 31, 195, 285, 409, 930 |
| MboII | GAAGA | 9 cut(s) | 178, 295, 392, 437, 497, 733, 874, 877, 1005 |
| MflI | RGATCY | 1 cut(s) | 31 |
| MhlI | GDGCHC | 2 cut(s) | 335, 837 |
| MluCI | AATT | 2 cut(s) | 467, 1003 |
| MlyI | GAGTC | 4 cut(s) | 600, 845, 979, 990 |
| Mph1103I | ATGCAT | 1 cut(s) | 169 |
| MseI | TTAA | 3 cut(s) | 470, 680, 753 |
| MslI | CAYNNNNRTG | 2 cut(s) | 666, 908 |
| MspA1I | CMGCKG | 1 cut(s) | 969 |
| MspR9I | CCNGG | 1 cut(s) | 541 |
| Mva1269I | GAATGC | 1 cut(s) | 169 |
| MvaI | CCWGG | 1 cut(s) | 541 |
| NcoI | CCATGG | 1 cut(s) | 202 |
| NdeII | GATC | 6 cut(s) | 13, 31, 195, 285, 409, 930 |
| NlaIII | CATG | 4 cut(s) | 171, 206, 438, 483 |
| NlaIV | GGNNCC | 2 cut(s) | 210, 545 |
| NsiI | ATGCAT | 1 cut(s) | 169 |
| NspI | RCATGY | 2 cut(s) | 171, 483 |
| OliI | CACNNNNGTG | 1 cut(s) | 908 |
| PaeI | GCATGC | 1 cut(s) | 171 |
| PceI | AGGCCT | 1 cut(s) | 961 |
| PctI | GAATGC | 1 cut(s) | 169 |
| PfeI | GAWTC | 2 cut(s) | 232, 745 |
| PkrI | GCNGC | 2 cut(s) | 241, 244 |
| PleI | GAGTC | 4 cut(s) | 600, 845, 979, 990 |
| PpsI | GAGTC | 4 cut(s) | 600, 845, 979, 990 |
| Psp6I | CCWGG | 1 cut(s) | 539 |
| PspFI | CCCAGC | 2 cut(s) | 397, 969 |
| PspGI | CCWGG | 1 cut(s) | 539 |
| PspN4I | GGNNCC | 2 cut(s) | 210, 545 |
| PstNI | CAGNNNCTG | 1 cut(s) | 268 |
| PsuI | RGATCY | 1 cut(s) | 31 |
| PvuII | CAGCTG | 1 cut(s) | 969 |
| RsaI | GTAC | 2 cut(s) | 317, 956 |
| RsaNI | GTAC | 2 cut(s) | 316, 955 |
| RseI | CAYNNNNRTG | 2 cut(s) | 666, 908 |
| SaqAI | TTAA | 3 cut(s) | 470, 680, 753 |
| SatI | GCNGC | 2 cut(s) | 240, 243 |
| Sau3AI | GATC | 6 cut(s) | 13, 31, 195, 285, 409, 930 |
| SchI | GAGTC | 4 cut(s) | 600, 845, 979, 990 |
| ScrFI | CCNGG | 1 cut(s) | 541 |
| SduI | GDGCHC | 2 cut(s) | 335, 837 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 666, 908 |
| SmlI | CTYRAG | 1 cut(s) | 693 |
| SmoI | CTYRAG | 1 cut(s) | 693 |
| SpeI | ACTAGT | 1 cut(s) | 907 |
| SphI | GCATGC | 1 cut(s) | 171 |
| Sse9I | AATT | 2 cut(s) | 467, 1003 |
| SseBI | AGGCCT | 1 cut(s) | 961 |
| SspMI | CTAG | 4 cut(s) | 246, 548, 689, 908 |
| StuI | AGGCCT | 1 cut(s) | 961 |
| StyD4I | CCNGG | 1 cut(s) | 539 |
| StyI | CCWWGG | 2 cut(s) | 202, 547 |
| TaaI | ACNGT | 1 cut(s) | 685 |
| TaqI | TCGA | 3 cut(s) | 63, 83, 933 |
| TasI | AATT | 2 cut(s) | 467, 1003 |
| TatI | WGTACW | 1 cut(s) | 954 |
| TfiI | GAWTC | 2 cut(s) | 232, 745 |
| Tru1I | TTAA | 3 cut(s) | 470, 680, 753 |
| Tru9I | TTAA | 3 cut(s) | 470, 680, 753 |
| TseI | GCWGC | 2 cut(s) | 239, 242 |
| TspDTI | ATGAA | 4 cut(s) | 13, 106, 312, 951 |
| XceI | RCATGY | 2 cut(s) | 171, 483 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 668 |
| XmaJI | CCTAGG | 1 cut(s) | 547 |
| XspI | CTAG | 4 cut(s) | 246, 548, 689, 908 |
| Zsp2I | ATGCAT | 1 cut(s) | 169 |