ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 129 - 200 | 1.7e-16 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 324 |
| AccII | CGCG | 1 cut(s) | 12 |
| AciI | CCGC | 1 cut(s) | 640 |
| AclI | AACGTT | 3 cut(s) | 66, 173, 327 |
| AclWI | GGATC | 2 cut(s) | 79, 92 |
| AcsI | RAATTY | 3 cut(s) | 376, 388, 410 |
| AgsI | TTSAA | 1 cut(s) | 651 |
| AjnI | CCWGG | 1 cut(s) | 32 |
| AluBI | AGCT | 6 cut(s) | 129, 203, 252, 340, 403, 585 |
| AluI | AGCT | 6 cut(s) | 129, 203, 252, 340, 403, 585 |
| Alw21I | GWGCWC | 1 cut(s) | 573 |
| Alw26I | GTCTC | 1 cut(s) | 305 |
| AlwI | GGATC | 2 cut(s) | 79, 92 |
| ApeKI | GCWGC | 1 cut(s) | 622 |
| ApoI | RAATTY | 3 cut(s) | 376, 388, 410 |
| AspLEI | GCGC | 1 cut(s) | 535 |
| AspS9I | GGNCC | 3 cut(s) | 30, 109, 237 |
| AsuHPI | GGTGA | 2 cut(s) | 454, 643 |
| AvaII | GGWCC | 3 cut(s) | 30, 109, 237 |
| BamHI | GGATCC | 1 cut(s) | 84 |
| BauI | CACGAG | 1 cut(s) | 341 |
| Bbv12I | GWGCWC | 1 cut(s) | 573 |
| BbvI | GCAGC | 1 cut(s) | 609 |
| BciT130I | CCWGG | 1 cut(s) | 34 |
| BcoDI | GTCTC | 1 cut(s) | 305 |
| BfaI | CTAG | 2 cut(s) | 167, 465 |
| BisI | GCNGC | 1 cut(s) | 623 |
| BlsI | GCNGC | 1 cut(s) | 624 |
| Bme1390I | CCNGG | 1 cut(s) | 34 |
| Bme18I | GGWCC | 3 cut(s) | 30, 109, 237 |
| BmgT120I | GGNCC | 3 cut(s) | 30, 109, 237 |
| BmiI | GGNNCC | 2 cut(s) | 31, 86 |
| BmrFI | CCNGG | 1 cut(s) | 34 |
| BsaI | GGTCTC | 1 cut(s) | 305 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 512, 542 |
| Bse3DI | GCAATG | 1 cut(s) | 55 |
| BseBI | CCWGG | 1 cut(s) | 34 |
| BseMI | GCAATG | 1 cut(s) | 55 |
| BseRI | GAGGAG | 1 cut(s) | 603 |
| BseXI | GCAGC | 1 cut(s) | 609 |
| Bsh1236I | CGCG | 1 cut(s) | 12 |
| BsiHKAI | GWGCWC | 1 cut(s) | 573 |
| BslFI | GGGAC | 1 cut(s) | 656 |
| BsmAI | GTCTC | 1 cut(s) | 305 |
| BsmFI | GGGAC | 1 cut(s) | 656 |
| Bso31I | GGTCTC | 1 cut(s) | 305 |
| Bsp1286I | GDGCHC | 1 cut(s) | 573 |
| Bsp143I | GATC | 2 cut(s) | 84, 163 |
| BspACI | CCGC | 1 cut(s) | 640 |
| BspFNI | CGCG | 1 cut(s) | 12 |
| BspLI | GGNNCC | 2 cut(s) | 31, 86 |
| BspPI | GGATC | 2 cut(s) | 79, 92 |
| BspTNI | GGTCTC | 1 cut(s) | 305 |
| BsrDI | GCAATG | 1 cut(s) | 55 |
| BssMI | GATC | 2 cut(s) | 84, 163 |
| BssSI | CACGAG | 1 cut(s) | 341 |
| Bst2BI | CACGAG | 1 cut(s) | 341 |
| Bst2UI | CCWGG | 1 cut(s) | 34 |
| Bst4CI | ACNGT | 3 cut(s) | 237, 272, 310 |
| BstC8I | GCNNGC | 3 cut(s) | 10, 264, 638 |
| BstDEI | CTNAG | 4 cut(s) | 125, 359, 501, 617 |
| BstFNI | CGCG | 1 cut(s) | 12 |
| BstHHI | GCGC | 1 cut(s) | 535 |
| BstKTI | GATC | 2 cut(s) | 87, 166 |
| BstMAI | GTCTC | 1 cut(s) | 305 |
| BstMBI | GATC | 2 cut(s) | 84, 163 |
| BstNI | CCWGG | 1 cut(s) | 34 |
| BstSCI | CCNGG | 1 cut(s) | 32 |
| BstUI | CGCG | 1 cut(s) | 12 |
| BstV1I | GCAGC | 1 cut(s) | 609 |
| BstX2I | RGATCY | 1 cut(s) | 84 |
| BstYI | RGATCY | 1 cut(s) | 84 |
| Cac8I | GCNNGC | 3 cut(s) | 10, 264, 638 |
| CfoI | GCGC | 1 cut(s) | 535 |
| Cfr13I | GGNCC | 3 cut(s) | 30, 109, 237 |
| CviAII | CATG | 2 cut(s) | 241, 566 |
| CviJI | RGCY | 8 cut(s) | 129, 203, 252, 340, 403, 464, 585, 622 |
| CviKI_1 | RGCY | 8 cut(s) | 129, 203, 252, 340, 403, 464, 585, 622 |
| DdeI | CTNAG | 4 cut(s) | 125, 359, 501, 617 |
| DpnI | GATC | 2 cut(s) | 86, 165 |
| DpnII | GATC | 2 cut(s) | 84, 163 |
| Eco31I | GGTCTC | 1 cut(s) | 305 |
| Eco47I | GGWCC | 3 cut(s) | 30, 109, 237 |
| EcoO109I | RGGNCCY | 1 cut(s) | 109 |
| EcoRII | CCWGG | 1 cut(s) | 32 |
| FaeI | CATG | 2 cut(s) | 244, 569 |
| FaiI | YATR | 7 cut(s) | 143, 230, 242, 324, 394, 396, 567 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 569, 601 |
| FaqI | GGGAC | 1 cut(s) | 656 |
| FatI | CATG | 2 cut(s) | 240, 565 |
| FauI | CCCGC | 1 cut(s) | 633 |
| Fnu4HI | GCNGC | 1 cut(s) | 623 |
| Fsp4HI | GCNGC | 1 cut(s) | 623 |
| FspBI | CTAG | 2 cut(s) | 167, 465 |
| GlaI | GCGC | 1 cut(s) | 534 |
| GluI | GCNGC | 1 cut(s) | 623 |
| HhaI | GCGC | 1 cut(s) | 535 |
| Hin1II | CATG | 2 cut(s) | 244, 569 |
| Hin6I | GCGC | 1 cut(s) | 533 |
| HinP1I | GCGC | 1 cut(s) | 533 |
| HindIII | AAGCTT | 1 cut(s) | 401 |
| HinfI | GANTC | 1 cut(s) | 56 |
| HphI | GGTGA | 2 cut(s) | 454, 643 |
| Hpy188I | TCNGA | 4 cut(s) | 89, 276, 336, 438 |
| Hpy188III | TCNNGA | 1 cut(s) | 551 |
| HpyAV | CCTTC | 5 cut(s) | 67, 145, 415, 433, 454 |
| HpyCH4III | ACNGT | 3 cut(s) | 237, 272, 310 |
| HpyCH4IV | ACGT | 4 cut(s) | 66, 147, 173, 327 |
| HpyCH4V | TGCA | 3 cut(s) | 346, 590, 625 |
| HpyF3I | CTNAG | 4 cut(s) | 125, 359, 501, 617 |
| HpySE526I | ACGT | 4 cut(s) | 66, 147, 173, 327 |
| Hsp92II | CATG | 2 cut(s) | 244, 569 |
| HspAI | GCGC | 1 cut(s) | 533 |
| Kzo9I | GATC | 2 cut(s) | 84, 163 |
| LmnI | GCTCC | 2 cut(s) | 134, 576 |
| LpnPI | CCDG | 6 cut(s) | 19, 46, 248, 281, 366, 564 |
| Lsp1109I | GCAGC | 1 cut(s) | 609 |
| MaeI | CTAG | 2 cut(s) | 167, 465 |
| MaeII | ACGT | 4 cut(s) | 66, 147, 173, 327 |
| MaeIII | GTNAC | 2 cut(s) | 169, 539 |
| MalI | GATC | 2 cut(s) | 86, 165 |
| MboI | GATC | 2 cut(s) | 84, 163 |
| MboII | GAAGA | 1 cut(s) | 230 |
| MflI | RGATCY | 1 cut(s) | 84 |
| MhlI | GDGCHC | 1 cut(s) | 573 |
| MluCI | AATT | 5 cut(s) | 159, 376, 388, 410, 646 |
| MlyI | GAGTC | 1 cut(s) | 65 |
| MnlI | CCTC | 9 cut(s) | 7, 20, 177, 208, 382, 444, 514, 553, 624 |
| MseI | TTAA | 4 cut(s) | 63, 105, 158, 312 |
| MspR9I | CCNGG | 1 cut(s) | 34 |
| MvaI | CCWGG | 1 cut(s) | 34 |
| MvnI | CGCG | 1 cut(s) | 12 |
| NdeII | GATC | 2 cut(s) | 84, 163 |
| NlaIII | CATG | 2 cut(s) | 244, 569 |
| NlaIV | GGNNCC | 2 cut(s) | 31, 86 |
| PkrI | GCNGC | 1 cut(s) | 624 |
| PleI | GAGTC | 1 cut(s) | 64 |
| PpsI | GAGTC | 1 cut(s) | 64 |
| PpuMI | RGGWCCY | 1 cut(s) | 109 |
| PsiI | TTATAA | 1 cut(s) | 324 |
| Psp1406I | AACGTT | 3 cut(s) | 66, 173, 327 |
| Psp5II | RGGWCCY | 1 cut(s) | 109 |
| Psp6I | CCWGG | 1 cut(s) | 32 |
| PspGI | CCWGG | 1 cut(s) | 32 |
| PspN4I | GGNNCC | 2 cut(s) | 31, 86 |
| PspPI | GGNCC | 3 cut(s) | 30, 109, 237 |
| PspPPI | RGGWCCY | 1 cut(s) | 109 |
| PsuI | RGATCY | 1 cut(s) | 84 |
| SaqAI | TTAA | 4 cut(s) | 63, 105, 158, 312 |
| SatI | GCNGC | 1 cut(s) | 623 |
| Sau3AI | GATC | 2 cut(s) | 84, 163 |
| Sau96I | GGNCC | 3 cut(s) | 30, 109, 237 |
| SchI | GAGTC | 1 cut(s) | 65 |
| ScrFI | CCNGG | 1 cut(s) | 34 |
| SduI | GDGCHC | 1 cut(s) | 573 |
| SinI | GGWCC | 3 cut(s) | 30, 109, 237 |
| Sse9I | AATT | 5 cut(s) | 159, 376, 388, 410, 646 |
| SsiI | CCGC | 1 cut(s) | 640 |
| SspMI | CTAG | 2 cut(s) | 167, 465 |
| StyD4I | CCNGG | 1 cut(s) | 32 |
| TaaI | ACNGT | 3 cut(s) | 237, 272, 310 |
| TaiI | ACGT | 4 cut(s) | 69, 150, 176, 330 |
| TaqI | TCGA | 2 cut(s) | 59, 189 |
| TasI | AATT | 5 cut(s) | 159, 376, 388, 410, 646 |
| Tru1I | TTAA | 4 cut(s) | 63, 105, 158, 312 |
| Tru9I | TTAA | 4 cut(s) | 63, 105, 158, 312 |
| TseI | GCWGC | 1 cut(s) | 622 |
| TspDTI | ATGAA | 3 cut(s) | 17, 158, 381 |
| TspGWI | ACGGA | 1 cut(s) | 558 |
| VpaK11BI | GGWCC | 3 cut(s) | 30, 109, 237 |
| XapI | RAATTY | 3 cut(s) | 376, 388, 410 |
| XspI | CTAG | 2 cut(s) | 167, 465 |