Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 2 - 120 | 1.2e-15 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 364 |
| AccBSI | CCGCTC | 1 cut(s) | 253 |
| AciI | CCGC | 1 cut(s) | 251 |
| AclWI | GGATC | 3 cut(s) | 173, 186, 279 |
| AfaI | GTAC | 4 cut(s) | 54, 307, 323, 442 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 256 |
| AjnI | CCWGG | 2 cut(s) | 255, 298 |
| AluBI | AGCT | 6 cut(s) | 11, 96, 137, 149, 221, 295 |
| AluI | AGCT | 6 cut(s) | 11, 96, 137, 149, 221, 295 |
| Alw21I | GWGCWC | 1 cut(s) | 24 |
| Alw44I | GTGCAC | 1 cut(s) | 20 |
| AlwI | GGATC | 3 cut(s) | 173, 186, 279 |
| AoxI | GGCC | 1 cut(s) | 377 |
| ApaLI | GTGCAC | 1 cut(s) | 20 |
| ApeKI | GCWGC | 2 cut(s) | 295, 341 |
| AspLEI | GCGC | 1 cut(s) | 365 |
| AsuC2I | CCSGG | 1 cut(s) | 326 |
| BaeGI | GKGCMC | 1 cut(s) | 24 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 305, 338 |
| BamHI | GGATCC | 1 cut(s) | 178 |
| Bbv12I | GWGCWC | 1 cut(s) | 24 |
| BbvI | GCAGC | 2 cut(s) | 282, 328 |
| BccI | CCATC | 1 cut(s) | 79 |
| BciT130I | CCWGG | 2 cut(s) | 257, 300 |
| BcnI | CCSGG | 1 cut(s) | 326 |
| BfaI | CTAG | 3 cut(s) | 134, 164, 416 |
| BisI | GCNGC | 2 cut(s) | 296, 342 |
| BlsI | GCNGC | 2 cut(s) | 297, 343 |
| BmcAI | AGTACT | 1 cut(s) | 307 |
| Bme1390I | CCNGG | 3 cut(s) | 257, 300, 326 |
| BmiI | GGNNCC | 1 cut(s) | 180 |
| BmrFI | CCNGG | 3 cut(s) | 257, 300, 326 |
| BmsI | GCATC | 1 cut(s) | 49 |
| BpmI | CTGGAG | 1 cut(s) | 239 |
| BpuEI | CTTGAG | 1 cut(s) | 105 |
| BpuMI | CCSGG | 1 cut(s) | 326 |
| BsaAI | YACGTR | 1 cut(s) | 56 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 256 |
| Bse3DI | GCAATG | 2 cut(s) | 358, 391 |
| BseBI | CCWGG | 2 cut(s) | 257, 300 |
| BseGI | GGATG | 2 cut(s) | 10, 90 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 256 |
| BseMI | GCAATG | 2 cut(s) | 358, 391 |
| BseMII | CTCAG | 1 cut(s) | 305 |
| BseRI | GAGGAG | 1 cut(s) | 434 |
| BseSI | GKGCMC | 1 cut(s) | 24 |
| BseXI | GCAGC | 2 cut(s) | 282, 328 |
| BshFI | GGCC | 1 cut(s) | 379 |
| BsiHKAI | GWGCWC | 1 cut(s) | 24 |
| BsiSI | CCGG | 1 cut(s) | 325 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 256 |
| BsmI | GAATGC | 1 cut(s) | 226 |
| BsnI | GGCC | 1 cut(s) | 379 |
| Bsp1286I | GDGCHC | 1 cut(s) | 24 |
| Bsp143I | GATC | 3 cut(s) | 178, 271, 423 |
| BspACI | CCGC | 1 cut(s) | 251 |
| BspANI | GGCC | 1 cut(s) | 379 |
| BspCNI | CTCAG | 1 cut(s) | 304 |
| BspLI | GGNNCC | 1 cut(s) | 180 |
| BspPI | GGATC | 3 cut(s) | 173, 186, 279 |
| BsrBI | CCGCTC | 1 cut(s) | 253 |
| BsrDI | GCAATG | 2 cut(s) | 358, 391 |
| BssMI | GATC | 3 cut(s) | 178, 271, 423 |
| Bst2UI | CCWGG | 2 cut(s) | 257, 300 |
| BstBAI | YACGTR | 1 cut(s) | 56 |
| BstC8I | GCNNGC | 2 cut(s) | 151, 155 |
| BstDEI | CTNAG | 1 cut(s) | 291 |
| BstF5I | GGATG | 2 cut(s) | 10, 90 |
| BstHHI | GCGC | 1 cut(s) | 365 |
| BstKTI | GATC | 3 cut(s) | 181, 274, 426 |
| BstMBI | GATC | 3 cut(s) | 178, 271, 423 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 362 |
| BstNI | CCWGG | 2 cut(s) | 257, 300 |
| BstSCI | CCNGG | 3 cut(s) | 255, 298, 324 |
| BstSLI | GKGCMC | 1 cut(s) | 24 |
| BstV1I | GCAGC | 2 cut(s) | 282, 328 |
| BstX2I | RGATCY | 2 cut(s) | 178, 271 |
| BstYI | RGATCY | 2 cut(s) | 178, 271 |
| BsuRI | GGCC | 1 cut(s) | 379 |
| BtsCI | GGATG | 2 cut(s) | 10, 90 |
| Cac8I | GCNNGC | 2 cut(s) | 151, 155 |
| CfoI | GCGC | 1 cut(s) | 365 |
| Csp6I | GTAC | 4 cut(s) | 53, 306, 322, 441 |
| CviQI | GTAC | 4 cut(s) | 53, 306, 322, 441 |
| DdeI | CTNAG | 1 cut(s) | 291 |
| DpnI | GATC | 3 cut(s) | 180, 273, 425 |
| DpnII | GATC | 3 cut(s) | 178, 271, 423 |
| Eco147I | AGGCCT | 1 cut(s) | 379 |
| EcoRII | CCWGG | 2 cut(s) | 255, 298 |
| EcoT22I | ATGCAT | 1 cut(s) | 228 |
| FaiI | YATR | 4 cut(s) | 50, 224, 267, 370 |
| FauI | CCCGC | 1 cut(s) | 258 |
| Fnu4HI | GCNGC | 2 cut(s) | 296, 342 |
| FokI | GGATG | 2 cut(s) | 17, 97 |
| Fsp4HI | GCNGC | 2 cut(s) | 296, 342 |
| FspBI | CTAG | 3 cut(s) | 134, 164, 416 |
| FspI | TGCGCA | 1 cut(s) | 364 |
| GlaI | GCGC | 1 cut(s) | 364 |
| GluI | GCNGC | 2 cut(s) | 296, 342 |
| GsuI | CTGGAG | 1 cut(s) | 239 |
| HaeIII | GGCC | 1 cut(s) | 379 |
| HapII | CCGG | 1 cut(s) | 325 |
| HhaI | GCGC | 1 cut(s) | 365 |
| Hin6I | GCGC | 1 cut(s) | 363 |
| HinP1I | GCGC | 1 cut(s) | 363 |
| HinfI | GANTC | 3 cut(s) | 101, 128, 239 |
| HpaII | CCGG | 1 cut(s) | 325 |
| Hpy166II | GTNNAC | 1 cut(s) | 22 |
| Hpy188III | TCNNGA | 2 cut(s) | 164, 416 |
| Hpy8I | GTNNAC | 1 cut(s) | 22 |
| HpyAV | CCTTC | 2 cut(s) | 323, 408 |
| HpyCH4IV | ACGT | 1 cut(s) | 55 |
| HpyCH4V | TGCA | 5 cut(s) | 22, 62, 153, 226, 384 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 362 |
| HpyF3I | CTNAG | 1 cut(s) | 291 |
| HpySE526I | ACGT | 1 cut(s) | 55 |
| HspAI | GCGC | 1 cut(s) | 363 |
| Kzo9I | GATC | 3 cut(s) | 178, 271, 423 |
| LmnI | GCTCC | 2 cut(s) | 8, 258 |
| Lsp1109I | GCAGC | 2 cut(s) | 282, 328 |
| LweI | GCATC | 1 cut(s) | 49 |
| MaeI | CTAG | 3 cut(s) | 134, 164, 416 |
| MaeII | ACGT | 1 cut(s) | 55 |
| MaeIII | GTNAC | 1 cut(s) | 129 |
| MalI | GATC | 3 cut(s) | 180, 273, 425 |
| MbiI | CCGCTC | 1 cut(s) | 253 |
| MboI | GATC | 3 cut(s) | 178, 271, 423 |
| MflI | RGATCY | 2 cut(s) | 178, 271 |
| MhlI | GDGCHC | 1 cut(s) | 24 |
| MluCI | AATT | 1 cut(s) | 45 |
| MlyI | GAGTC | 1 cut(s) | 137 |
| MnlI | CCTC | 3 cut(s) | 35, 412, 417 |
| Mph1103I | ATGCAT | 1 cut(s) | 228 |
| MseI | TTAA | 2 cut(s) | 212, 445 |
| MslI | CAYNNNNRTG | 1 cut(s) | 33 |
| MspA1I | CMGCKG | 1 cut(s) | 295 |
| MspI | CCGG | 1 cut(s) | 325 |
| MspR9I | CCNGG | 3 cut(s) | 257, 300, 326 |
| Mva1269I | GAATGC | 1 cut(s) | 226 |
| MvaI | CCWGG | 2 cut(s) | 257, 300 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 362 |
| NciI | CCSGG | 1 cut(s) | 326 |
| NdeII | GATC | 3 cut(s) | 178, 271, 423 |
| NlaIV | GGNNCC | 1 cut(s) | 180 |
| NmuCI | GTSAC | 1 cut(s) | 129 |
| NsbI | TGCGCA | 1 cut(s) | 364 |
| NsiI | ATGCAT | 1 cut(s) | 228 |
| PceI | AGGCCT | 1 cut(s) | 379 |
| PctI | GAATGC | 1 cut(s) | 226 |
| PfeI | GAWTC | 2 cut(s) | 101, 239 |
| PkrI | GCNGC | 2 cut(s) | 297, 343 |
| PleI | GAGTC | 1 cut(s) | 136 |
| PpsI | GAGTC | 1 cut(s) | 136 |
| Ppu21I | YACGTR | 1 cut(s) | 56 |
| Psp6I | CCWGG | 2 cut(s) | 255, 298 |
| PspGI | CCWGG | 2 cut(s) | 255, 298 |
| PspN4I | GGNNCC | 1 cut(s) | 180 |
| PsuI | RGATCY | 2 cut(s) | 178, 271 |
| PvuII | CAGCTG | 1 cut(s) | 295 |
| RsaI | GTAC | 4 cut(s) | 54, 307, 323, 442 |
| RsaNI | GTAC | 4 cut(s) | 53, 306, 322, 441 |
| RseI | CAYNNNNRTG | 1 cut(s) | 33 |
| SaqAI | TTAA | 2 cut(s) | 212, 445 |
| SatI | GCNGC | 2 cut(s) | 296, 342 |
| Sau3AI | GATC | 3 cut(s) | 178, 271, 423 |
| ScaI | AGTACT | 1 cut(s) | 307 |
| SchI | GAGTC | 1 cut(s) | 137 |
| ScrFI | CCNGG | 3 cut(s) | 257, 300, 326 |
| SduI | GDGCHC | 1 cut(s) | 24 |
| SetI | ASST | 9 cut(s) | 13, 58, 98, 139, 151, 223, 261, 297, 409 |
| SfaNI | GCATC | 1 cut(s) | 49 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 33 |
| SmlI | CTYRAG | 1 cut(s) | 120 |
| SmoI | CTYRAG | 1 cut(s) | 120 |
| Sse9I | AATT | 1 cut(s) | 45 |
| SseBI | AGGCCT | 1 cut(s) | 379 |
| SsiI | CCGC | 1 cut(s) | 251 |
| SspMI | CTAG | 3 cut(s) | 134, 164, 416 |
| StuI | AGGCCT | 1 cut(s) | 379 |
| StyD4I | CCNGG | 3 cut(s) | 255, 298, 324 |
| TaiI | ACGT | 1 cut(s) | 58 |
| TaqI | TCGA | 1 cut(s) | 197 |
| TasI | AATT | 1 cut(s) | 45 |
| TatI | WGTACW | 2 cut(s) | 305, 440 |
| TfiI | GAWTC | 2 cut(s) | 101, 239 |
| Tru1I | TTAA | 2 cut(s) | 212, 445 |
| Tru9I | TTAA | 2 cut(s) | 212, 445 |
| TseFI | GTSAC | 1 cut(s) | 129 |
| TseI | GCWGC | 2 cut(s) | 295, 341 |
| Tsp45I | GTSAC | 1 cut(s) | 129 |
| VneI | GTGCAC | 1 cut(s) | 20 |
| XbaI | TCTAGA | 2 cut(s) | 163, 415 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 263 |
| XspI | CTAG | 3 cut(s) | 134, 164, 416 |
| ZrmI | AGTACT | 1 cut(s) | 307 |
| Zsp2I | ATGCAT | 1 cut(s) | 228 |