ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 85 |
| Acc36I | ACCTGC | 2 cut(s) | 85, 353 |
| Acc65I | GGTACC | 1 cut(s) | 400 |
| AccB1I | GGYRCC | 1 cut(s) | 400 |
| AccI | GTMKAC | 1 cut(s) | 175 |
| AccIII | TCCGGA | 1 cut(s) | 673 |
| AciI | CCGC | 1 cut(s) | 229 |
| AclWI | GGATC | 4 cut(s) | 579, 814, 827, 890 |
| AcoI | YGGCCR | 1 cut(s) | 600 |
| AcsI | RAATTY | 1 cut(s) | 372 |
| AcuI | CTGAAG | 1 cut(s) | 326 |
| AfaI | GTAC | 4 cut(s) | 251, 402, 538, 706 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 609, 723, 863 |
| AgsI | TTSAA | 3 cut(s) | 321, 382, 568 |
| AjnI | CCWGG | 2 cut(s) | 13, 631 |
| AleI | CACNNNNGTG | 1 cut(s) | 269 |
| AluBI | AGCT | 6 cut(s) | 20, 199, 316, 531, 662, 877 |
| AluI | AGCT | 6 cut(s) | 20, 199, 316, 531, 662, 877 |
| Alw21I | GWGCWC | 2 cut(s) | 22, 871 |
| Alw26I | GTCTC | 1 cut(s) | 714 |
| Alw44I | GTGCAC | 1 cut(s) | 867 |
| AlwI | GGATC | 4 cut(s) | 579, 814, 827, 890 |
| Aor13HI | TCCGGA | 1 cut(s) | 673 |
| AoxI | GGCC | 1 cut(s) | 600 |
| ApaLI | GTGCAC | 1 cut(s) | 867 |
| ApeKI | GCWGC | 3 cut(s) | 196, 226, 904 |
| ApoI | RAATTY | 1 cut(s) | 372 |
| AseI | ATTAAT | 2 cut(s) | 144, 620 |
| Asp718I | GGTACC | 1 cut(s) | 400 |
| AsuHPI | GGTGA | 1 cut(s) | 497 |
| AxyI | CCTNAGG | 1 cut(s) | 130 |
| BaeGI | GKGCMC | 1 cut(s) | 871 |
| BalI | TGGCCA | 1 cut(s) | 602 |
| BamHI | GGATCC | 1 cut(s) | 819 |
| BanI | GGYRCC | 1 cut(s) | 400 |
| BanII | GRGCYC | 1 cut(s) | 22 |
| Bbv12I | GWGCWC | 2 cut(s) | 22, 871 |
| BbvI | GCAGC | 3 cut(s) | 208, 238, 891 |
| BccI | CCATC | 1 cut(s) | 765 |
| BciT130I | CCWGG | 2 cut(s) | 15, 633 |
| BcoDI | GTCTC | 1 cut(s) | 714 |
| BfaI | CTAG | 3 cut(s) | 200, 861, 878 |
| BfmI | CTRYAG | 1 cut(s) | 72 |
| BfuAI | ACCTGC | 2 cut(s) | 85, 353 |
| BisI | GCNGC | 3 cut(s) | 197, 227, 905 |
| BlsI | GCNGC | 3 cut(s) | 198, 228, 906 |
| Bme1390I | CCNGG | 2 cut(s) | 15, 633 |
| BmiI | GGNNCC | 2 cut(s) | 402, 821 |
| BmrFI | CCNGG | 2 cut(s) | 15, 633 |
| BmsI | GCATC | 1 cut(s) | 40 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 113, 145 |
| BpmI | CTGGAG | 2 cut(s) | 6, 358 |
| BsaBI | GATNNNNATC | 2 cut(s) | 800, 831 |
| BsaJI | CCNNGG | 1 cut(s) | 13 |
| BsaWI | WCCGGW | 1 cut(s) | 673 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 9, 39 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 609, 723, 863 |
| Bse1I | ACTGG | 2 cut(s) | 23, 337 |
| Bse21I | CCTNAGG | 1 cut(s) | 130 |
| Bse8I | GATNNNNATC | 2 cut(s) | 800, 831 |
| BseAI | TCCGGA | 1 cut(s) | 673 |
| BseBI | CCWGG | 2 cut(s) | 15, 633 |
| BseDI | CCNNGG | 1 cut(s) | 13 |
| BseJI | GATNNNNATC | 2 cut(s) | 800, 831 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 609, 723, 863 |
| BseMII | CTCAG | 4 cut(s) | 144, 662, 710, 876 |
| BseNI | ACTGG | 2 cut(s) | 23, 337 |
| BseRI | GAGGAG | 2 cut(s) | 742, 846 |
| BseSI | GKGCMC | 1 cut(s) | 871 |
| BseXI | GCAGC | 3 cut(s) | 208, 238, 891 |
| BsgI | GTGCAG | 2 cut(s) | 245, 489 |
| BshFI | GGCC | 1 cut(s) | 602 |
| BshNI | GGYRCC | 1 cut(s) | 400 |
| BsiHKAI | GWGCWC | 2 cut(s) | 22, 871 |
| BsiSI | CCGG | 1 cut(s) | 674 |
| BslFI | GGGAC | 1 cut(s) | 803 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 609, 723, 863 |
| BsmAI | GTCTC | 1 cut(s) | 714 |
| BsmBI | CGTCTC | 1 cut(s) | 714 |
| BsmFI | GGGAC | 1 cut(s) | 803 |
| BsnI | GGCC | 1 cut(s) | 602 |
| Bsp1286I | GDGCHC | 2 cut(s) | 22, 871 |
| Bsp13I | TCCGGA | 1 cut(s) | 673 |
| Bsp143I | GATC | 4 cut(s) | 451, 571, 819, 895 |
| BspACI | CCGC | 1 cut(s) | 229 |
| BspANI | GGCC | 1 cut(s) | 602 |
| BspCNI | CTCAG | 4 cut(s) | 143, 661, 709, 877 |
| BspEI | TCCGGA | 1 cut(s) | 673 |
| BspLI | GGNNCC | 2 cut(s) | 402, 821 |
| BspMAI | CTGCAG | 1 cut(s) | 76 |
| BspMI | ACCTGC | 2 cut(s) | 85, 353 |
| BspPI | GGATC | 4 cut(s) | 579, 814, 827, 890 |
| BspT107I | GGYRCC | 1 cut(s) | 400 |
| BsrI | ACTGG | 2 cut(s) | 23, 337 |
| BssECI | CCNNGG | 1 cut(s) | 13 |
| BssMI | GATC | 4 cut(s) | 451, 571, 819, 895 |
| Bst2UI | CCWGG | 2 cut(s) | 15, 633 |
| Bst4CI | ACNGT | 2 cut(s) | 42, 400 |
| Bst6I | CTCTTC | 2 cut(s) | 78, 489 |
| BstC8I | GCNNGC | 2 cut(s) | 693, 909 |
| BstDEI | CTNAG | 4 cut(s) | 130, 648, 696, 885 |
| BstKTI | GATC | 4 cut(s) | 454, 574, 822, 898 |
| BstMAI | GTCTC | 1 cut(s) | 714 |
| BstMBI | GATC | 4 cut(s) | 451, 571, 819, 895 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 599 |
| BstNI | CCWGG | 2 cut(s) | 15, 633 |
| BstNSI | RCATGY | 2 cut(s) | 695, 911 |
| BstSCI | CCNGG | 2 cut(s) | 13, 631 |
| BstSFI | CTRYAG | 1 cut(s) | 72 |
| BstSLI | GKGCMC | 1 cut(s) | 871 |
| BstV1I | GCAGC | 3 cut(s) | 208, 238, 891 |
| BstX2I | RGATCY | 2 cut(s) | 571, 819 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 271 |
| BstYI | RGATCY | 2 cut(s) | 571, 819 |
| Bsu36I | CCTNAGG | 1 cut(s) | 130 |
| BsuRI | GGCC | 1 cut(s) | 602 |
| BtgZI | GCGATG | 2 cut(s) | 608, 784 |
| BtsIMutI | CAGTG | 1 cut(s) | 30 |
| BveI | ACCTGC | 2 cut(s) | 85, 353 |
| Cac8I | GCNNGC | 2 cut(s) | 693, 909 |
| Csp6I | GTAC | 4 cut(s) | 250, 401, 537, 705 |
| CviAII | CATG | 6 cut(s) | 242, 253, 269, 692, 723, 908 |
| CviQI | GTAC | 4 cut(s) | 250, 401, 537, 705 |
| DdeI | CTNAG | 4 cut(s) | 130, 648, 696, 885 |
| DpnI | GATC | 4 cut(s) | 453, 573, 821, 897 |
| DpnII | GATC | 4 cut(s) | 451, 571, 819, 895 |
| EaeI | YGGCCR | 1 cut(s) | 600 |
| Eam1104I | CTCTTC | 2 cut(s) | 78, 489 |
| EarI | CTCTTC | 2 cut(s) | 78, 489 |
| Ecl136II | GAGCTC | 1 cut(s) | 20 |
| Eco24I | GRGCYC | 1 cut(s) | 22 |
| Eco32I | GATATC | 1 cut(s) | 802 |
| Eco53kI | GAGCTC | 1 cut(s) | 20 |
| Eco57I | CTGAAG | 1 cut(s) | 326 |
| Eco81I | CCTNAGG | 1 cut(s) | 130 |
| EcoICRI | GAGCTC | 1 cut(s) | 20 |
| EcoRII | CCWGG | 2 cut(s) | 13, 631 |
| EcoRV | GATATC | 1 cut(s) | 802 |
| EcoT22I | ATGCAT | 1 cut(s) | 913 |
| EcoT38I | GRGCYC | 1 cut(s) | 22 |
| Esp3I | CGTCTC | 1 cut(s) | 714 |
| FaeI | CATG | 6 cut(s) | 245, 256, 272, 695, 726, 911 |
| FaqI | GGGAC | 1 cut(s) | 803 |
| FatI | CATG | 6 cut(s) | 241, 252, 268, 691, 722, 907 |
| FauI | CCCGC | 1 cut(s) | 222 |
| FauNDI | CATATG | 1 cut(s) | 186 |
| FblI | GTMKAC | 1 cut(s) | 175 |
| Fnu4HI | GCNGC | 3 cut(s) | 197, 227, 905 |
| FriOI | GRGCYC | 1 cut(s) | 22 |
| Fsp4HI | GCNGC | 3 cut(s) | 197, 227, 905 |
| FspBI | CTAG | 3 cut(s) | 200, 861, 878 |
| GluI | GCNGC | 3 cut(s) | 197, 227, 905 |
| GsuI | CTGGAG | 2 cut(s) | 6, 358 |
| HaeIII | GGCC | 1 cut(s) | 602 |
| HapII | CCGG | 1 cut(s) | 674 |
| Hin1II | CATG | 6 cut(s) | 245, 256, 272, 695, 726, 911 |
| HincII | GTYRAC | 3 cut(s) | 137, 176, 330 |
| HindII | GTYRAC | 3 cut(s) | 137, 176, 330 |
| HindIII | AAGCTT | 2 cut(s) | 314, 660 |
| HinfI | GANTC | 2 cut(s) | 628, 827 |
| HpaI | GTTAAC | 1 cut(s) | 330 |
| HpaII | CCGG | 1 cut(s) | 674 |
| HphI | GGTGA | 1 cut(s) | 497 |
| Hpy166II | GTNNAC | 5 cut(s) | 137, 176, 330, 537, 869 |
| Hpy188I | TCNGA | 4 cut(s) | 306, 543, 627, 837 |
| Hpy188III | TCNNGA | 2 cut(s) | 674, 805 |
| Hpy8I | GTNNAC | 5 cut(s) | 137, 176, 330, 537, 869 |
| HpyAV | CCTTC | 3 cut(s) | 301, 727, 855 |
| HpyCH4III | ACNGT | 2 cut(s) | 42, 400 |
| HpyCH4IV | ACGT | 2 cut(s) | 139, 707 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 599 |
| HpyF3I | CTNAG | 4 cut(s) | 130, 648, 696, 885 |
| HpySE526I | ACGT | 2 cut(s) | 139, 707 |
| Hsp92II | CATG | 6 cut(s) | 245, 256, 272, 695, 726, 911 |
| Kpn2I | TCCGGA | 1 cut(s) | 673 |
| KpnI | GGTACC | 1 cut(s) | 404 |
| KspAI | GTTAAC | 1 cut(s) | 330 |
| Kzo9I | GATC | 4 cut(s) | 451, 571, 819, 895 |
| LmnI | GCTCC | 3 cut(s) | 17, 25, 359 |
| Lsp1109I | GCAGC | 3 cut(s) | 208, 238, 891 |
| LweI | GCATC | 1 cut(s) | 40 |
| MaeI | CTAG | 3 cut(s) | 200, 861, 878 |
| MaeII | ACGT | 2 cut(s) | 139, 707 |
| MaeIII | GTNAC | 1 cut(s) | 880 |
| MalI | GATC | 4 cut(s) | 453, 573, 821, 897 |
| MboI | GATC | 4 cut(s) | 451, 571, 819, 895 |
| MboII | GAAGA | 3 cut(s) | 95, 506, 840 |
| MflI | RGATCY | 2 cut(s) | 571, 819 |
| MhlI | GDGCHC | 2 cut(s) | 22, 871 |
| MlsI | TGGCCA | 1 cut(s) | 602 |
| MluCI | AATT | 7 cut(s) | 35, 145, 372, 406, 418, 621, 642 |
| MluNI | TGGCCA | 1 cut(s) | 602 |
| MnlI | CCTC | 9 cut(s) | 73, 139, 382, 444, 544, 720, 724, 864, 867 |
| Mox20I | TGGCCA | 1 cut(s) | 602 |
| Mph1103I | ATGCAT | 1 cut(s) | 913 |
| MroI | TCCGGA | 1 cut(s) | 673 |
| MscI | TGGCCA | 1 cut(s) | 602 |
| MseI | TTAA | 5 cut(s) | 144, 329, 585, 620, 641 |
| MslI | CAYNNNNRTG | 1 cut(s) | 269 |
| Msp20I | TGGCCA | 1 cut(s) | 602 |
| MspA1I | CMGCKG | 1 cut(s) | 229 |
| MspI | CCGG | 1 cut(s) | 674 |
| MspR9I | CCNGG | 2 cut(s) | 15, 633 |
| MvaI | CCWGG | 2 cut(s) | 15, 633 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 599 |
| NdeI | CATATG | 1 cut(s) | 186 |
| NdeII | GATC | 4 cut(s) | 451, 571, 819, 895 |
| NlaIII | CATG | 6 cut(s) | 245, 256, 272, 695, 726, 911 |
| NlaIV | GGNNCC | 2 cut(s) | 402, 821 |
| NmuCI | GTSAC | 1 cut(s) | 880 |
| NsiI | ATGCAT | 1 cut(s) | 913 |
| NspI | RCATGY | 2 cut(s) | 695, 911 |
| OliI | CACNNNNGTG | 1 cut(s) | 269 |
| PaeI | GCATGC | 2 cut(s) | 695, 911 |
| PaqCI | CACCTGC | 1 cut(s) | 85 |
| PfeI | GAWTC | 2 cut(s) | 628, 827 |
| PkrI | GCNGC | 3 cut(s) | 198, 228, 906 |
| PshBI | ATTAAT | 2 cut(s) | 144, 620 |
| Psp124BI | GAGCTC | 1 cut(s) | 22 |
| Psp6I | CCWGG | 2 cut(s) | 13, 631 |
| PspGI | CCWGG | 2 cut(s) | 13, 631 |
| PspN4I | GGNNCC | 2 cut(s) | 402, 821 |
| PstI | CTGCAG | 1 cut(s) | 76 |
| PsuI | RGATCY | 2 cut(s) | 571, 819 |
| RsaI | GTAC | 4 cut(s) | 251, 402, 538, 706 |
| RsaNI | GTAC | 4 cut(s) | 250, 401, 537, 705 |
| RseI | CAYNNNNRTG | 1 cut(s) | 269 |
| SacI | GAGCTC | 1 cut(s) | 22 |
| SalI | GTCGAC | 1 cut(s) | 174 |
| SaqAI | TTAA | 5 cut(s) | 144, 329, 585, 620, 641 |
| SatI | GCNGC | 3 cut(s) | 197, 227, 905 |
| Sau3AI | GATC | 4 cut(s) | 451, 571, 819, 895 |
| ScrFI | CCNGG | 2 cut(s) | 15, 633 |
| SduI | GDGCHC | 2 cut(s) | 22, 871 |
| SfaNI | GCATC | 1 cut(s) | 40 |
| SfcI | CTRYAG | 1 cut(s) | 72 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 269 |
| SphI | GCATGC | 2 cut(s) | 695, 911 |
| Sse9I | AATT | 7 cut(s) | 35, 145, 372, 406, 418, 621, 642 |
| SsiI | CCGC | 1 cut(s) | 229 |
| SspMI | CTAG | 3 cut(s) | 200, 861, 878 |
| SstI | GAGCTC | 1 cut(s) | 22 |
| StyD4I | CCNGG | 2 cut(s) | 13, 631 |
| TaaI | ACNGT | 2 cut(s) | 42, 400 |
| TaiI | ACGT | 2 cut(s) | 142, 710 |
| TaqI | TCGA | 2 cut(s) | 175, 234 |
| TasI | AATT | 7 cut(s) | 35, 145, 372, 406, 418, 621, 642 |
| TatI | WGTACW | 1 cut(s) | 536 |
| TfiI | GAWTC | 2 cut(s) | 628, 827 |
| Tru1I | TTAA | 5 cut(s) | 144, 329, 585, 620, 641 |
| Tru9I | TTAA | 5 cut(s) | 144, 329, 585, 620, 641 |
| TscAI | CASTG | 1 cut(s) | 30 |
| TseFI | GTSAC | 1 cut(s) | 880 |
| TseI | GCWGC | 3 cut(s) | 196, 226, 904 |
| Tsp45I | GTSAC | 1 cut(s) | 880 |
| TspDTI | ATGAA | 3 cut(s) | 23, 431, 819 |
| TspGWI | ACGGA | 1 cut(s) | 506 |
| TspRI | CASTG | 1 cut(s) | 30 |
| VneI | GTGCAC | 1 cut(s) | 867 |
| VspI | ATTAAT | 2 cut(s) | 144, 620 |
| XapI | RAATTY | 1 cut(s) | 372 |
| XceI | RCATGY | 2 cut(s) | 695, 911 |
| XmiI | GTMKAC | 1 cut(s) | 175 |
| XspI | CTAG | 3 cut(s) | 200, 861, 878 |
| Zsp2I | ATGCAT | 1 cut(s) | 913 |