ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 933, 1040 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 863 |
| AccI | GTMKAC | 1 cut(s) | 489 |
| AccII | CGCG | 2 cut(s) | 980, 1145 |
| AciI | CCGC | 5 cut(s) | 274, 835, 972, 980, 1063 |
| AclWI | GGATC | 3 cut(s) | 583, 696, 1069 |
| AcsI | RAATTY | 4 cut(s) | 128, 317, 702, 791 |
| AcuI | CTGAAG | 2 cut(s) | 224, 1137 |
| AcyI | GRCGYC | 2 cut(s) | 930, 1037 |
| AdeI | CACNNNGTG | 1 cut(s) | 863 |
| AfaI | GTAC | 2 cut(s) | 375, 666 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 156, 227, 354, 606, 863, 900, 991 |
| AflIII | ACRYGT | 1 cut(s) | 1143 |
| AgeI | ACCGGT | 1 cut(s) | 456 |
| AgsI | TTSAA | 6 cut(s) | 173, 316, 323, 701, 748, 787 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1036 |
| AjnI | CCWGG | 2 cut(s) | 194, 984 |
| AluBI | AGCT | 1 cut(s) | 764 |
| AluI | AGCT | 1 cut(s) | 764 |
| Alw26I | GTCTC | 2 cut(s) | 514, 862 |
| AlwI | GGATC | 3 cut(s) | 583, 696, 1069 |
| Ama87I | CYCGRG | 1 cut(s) | 581 |
| AoxI | GGCC | 2 cut(s) | 103, 996 |
| ApeKI | GCWGC | 2 cut(s) | 239, 761 |
| ApoI | RAATTY | 4 cut(s) | 128, 317, 702, 791 |
| AseI | ATTAAT | 1 cut(s) | 879 |
| AsiGI | ACCGGT | 1 cut(s) | 456 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 947 |
| AspA2I | CCTAGG | 1 cut(s) | 106 |
| AspS9I | GGNCC | 1 cut(s) | 982 |
| AsuHPI | GGTGA | 3 cut(s) | 347, 421, 850 |
| AsuII | TTCGAA | 2 cut(s) | 563, 898 |
| AvaI | CYCGRG | 1 cut(s) | 581 |
| AvaII | GGWCC | 1 cut(s) | 982 |
| AvrII | CCTAGG | 1 cut(s) | 106 |
| BaeGI | GKGCMC | 1 cut(s) | 857 |
| BauI | CACGAG | 1 cut(s) | 67 |
| BbvI | GCAGC | 2 cut(s) | 226, 773 |
| BccI | CCATC | 4 cut(s) | 679, 881, 902, 983 |
| BceAI | ACGGC | 1 cut(s) | 983 |
| BciT130I | CCWGG | 2 cut(s) | 196, 986 |
| BciVI | GTATCC | 1 cut(s) | 159 |
| BcoDI | GTCTC | 2 cut(s) | 514, 862 |
| BfaI | CTAG | 4 cut(s) | 107, 191, 210, 243 |
| BfuI | GTATCC | 1 cut(s) | 159 |
| BisI | GCNGC | 2 cut(s) | 240, 762 |
| BlnI | CCTAGG | 1 cut(s) | 106 |
| BlsI | GCNGC | 2 cut(s) | 241, 763 |
| Bme1390I | CCNGG | 2 cut(s) | 196, 986 |
| Bme18I | GGWCC | 1 cut(s) | 982 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1036 |
| BmeT110I | CYCGRG | 1 cut(s) | 581 |
| BmgT120I | GGNCC | 1 cut(s) | 982 |
| BmiI | GGNNCC | 1 cut(s) | 892 |
| BmrFI | CCNGG | 2 cut(s) | 196, 986 |
| BmsI | GCATC | 2 cut(s) | 13, 269 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 564, 596 |
| Bpu14I | TTCGAA | 2 cut(s) | 563, 898 |
| BsaHI | GRCGYC | 2 cut(s) | 930, 1037 |
| BsaJI | CCNNGG | 1 cut(s) | 106 |
| BsaWI | WCCGGW | 2 cut(s) | 403, 456 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 156, 227, 354, 606, 863, 900, 991 |
| Bse118I | RCCGGY | 2 cut(s) | 456, 619 |
| Bse1I | ACTGG | 2 cut(s) | 596, 1037 |
| Bse3DI | GCAATG | 1 cut(s) | 675 |
| BseBI | CCWGG | 2 cut(s) | 196, 986 |
| BseDI | CCNNGG | 1 cut(s) | 106 |
| BseGI | GGATG | 1 cut(s) | 994 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 156, 227, 354, 606, 863, 900, 991 |
| BseMI | GCAATG | 1 cut(s) | 675 |
| BseMII | CTCAG | 2 cut(s) | 425, 441 |
| BseNI | ACTGG | 2 cut(s) | 596, 1037 |
| BseRI | GAGGAG | 3 cut(s) | 1028, 1106, 1109 |
| BseSI | GKGCMC | 1 cut(s) | 857 |
| BseXI | GCAGC | 2 cut(s) | 226, 773 |
| BseYI | CCCAGC | 1 cut(s) | 254 |
| BsgI | GTGCAG | 1 cut(s) | 797 |
| Bsh1236I | CGCG | 2 cut(s) | 980, 1145 |
| BshFI | GGCC | 2 cut(s) | 105, 998 |
| BshTI | ACCGGT | 1 cut(s) | 456 |
| BsiHKCI | CYCGRG | 1 cut(s) | 581 |
| BsiSI | CCGG | 3 cut(s) | 404, 457, 620 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 156, 227, 354, 606, 863, 900, 991 |
| BsmAI | GTCTC | 2 cut(s) | 514, 862 |
| BsnI | GGCC | 2 cut(s) | 105, 998 |
| BsoBI | CYCGRG | 1 cut(s) | 581 |
| Bsp119I | TTCGAA | 2 cut(s) | 563, 898 |
| Bsp1286I | GDGCHC | 1 cut(s) | 857 |
| Bsp143I | GATC | 3 cut(s) | 575, 688, 1074 |
| BspACI | CCGC | 5 cut(s) | 274, 835, 972, 980, 1063 |
| BspANI | GGCC | 2 cut(s) | 105, 998 |
| BspCNI | CTCAG | 2 cut(s) | 426, 442 |
| BspFNI | CGCG | 2 cut(s) | 980, 1145 |
| BspLI | GGNNCC | 1 cut(s) | 892 |
| BspPI | GGATC | 3 cut(s) | 583, 696, 1069 |
| BspQI | GCTCTTC | 1 cut(s) | 1049 |
| BspT104I | TTCGAA | 2 cut(s) | 563, 898 |
| BsrDI | GCAATG | 1 cut(s) | 675 |
| BsrFI | RCCGGY | 2 cut(s) | 456, 619 |
| BsrI | ACTGG | 2 cut(s) | 596, 1037 |
| BssAI | RCCGGY | 2 cut(s) | 456, 619 |
| BssECI | CCNNGG | 1 cut(s) | 106 |
| BssMI | GATC | 3 cut(s) | 575, 688, 1074 |
| BssNI | GRCGYC | 2 cut(s) | 930, 1037 |
| BssSI | CACGAG | 1 cut(s) | 67 |
| BssT1I | CCWWGG | 1 cut(s) | 106 |
| Bst2BI | CACGAG | 1 cut(s) | 67 |
| Bst2UI | CCWGG | 2 cut(s) | 196, 986 |
| Bst4CI | ACNGT | 3 cut(s) | 341, 378, 601 |
| Bst6I | CTCTTC | 3 cut(s) | 824, 1049, 1061 |
| BstACI | GRCGYC | 2 cut(s) | 930, 1037 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 146 |
| BstBI | TTCGAA | 2 cut(s) | 563, 898 |
| BstC8I | GCNNGC | 3 cut(s) | 447, 621, 812 |
| BstDEI | CTNAG | 3 cut(s) | 90, 434, 450 |
| BstEII | GGTNACC | 1 cut(s) | 335 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 225, 898 |
| BstF5I | GGATG | 1 cut(s) | 994 |
| BstFNI | CGCG | 2 cut(s) | 980, 1145 |
| BstKTI | GATC | 3 cut(s) | 578, 691, 1077 |
| BstMAI | GTCTC | 2 cut(s) | 514, 862 |
| BstMBI | GATC | 3 cut(s) | 575, 688, 1074 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 146, 832, 1025 |
| BstNI | CCWGG | 2 cut(s) | 196, 986 |
| BstPI | GGTNACC | 1 cut(s) | 335 |
| BstSCI | CCNGG | 2 cut(s) | 194, 984 |
| BstSLI | GKGCMC | 1 cut(s) | 857 |
| BstUI | CGCG | 2 cut(s) | 980, 1145 |
| BstV1I | GCAGC | 2 cut(s) | 226, 773 |
| BstX2I | RGATCY | 1 cut(s) | 1074 |
| BstYI | RGATCY | 1 cut(s) | 1074 |
| BsuI | GTATCC | 1 cut(s) | 159 |
| BsuRI | GGCC | 2 cut(s) | 105, 998 |
| BtsCI | GGATG | 1 cut(s) | 994 |
| BtsI | GCAGTG | 1 cut(s) | 805 |
| BtsIMutI | CAGTG | 2 cut(s) | 780, 805 |
| Cac8I | GCNNGC | 3 cut(s) | 447, 621, 812 |
| Cfr10I | RCCGGY | 2 cut(s) | 456, 619 |
| Cfr13I | GGNCC | 1 cut(s) | 982 |
| CseI | GACGC | 1 cut(s) | 1151 |
| Csp6I | GTAC | 2 cut(s) | 374, 665 |
| CspAI | ACCGGT | 1 cut(s) | 456 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 658, 693 |
| CviAII | CATG | 2 cut(s) | 125, 545 |
| CviQI | GTAC | 2 cut(s) | 374, 665 |
| DdeI | CTNAG | 3 cut(s) | 90, 434, 450 |
| DpnI | GATC | 3 cut(s) | 577, 690, 1076 |
| DpnII | GATC | 3 cut(s) | 575, 688, 1074 |
| DraI | TTTAAA | 1 cut(s) | 388 |
| DraIII | CACNNNGTG | 1 cut(s) | 863 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1036 |
| Eam1104I | CTCTTC | 3 cut(s) | 824, 1049, 1061 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1036 |
| EarI | CTCTTC | 3 cut(s) | 824, 1049, 1061 |
| EciI | GGCGGA | 1 cut(s) | 289 |
| Eco130I | CCWWGG | 1 cut(s) | 106 |
| Eco147I | AGGCCT | 1 cut(s) | 105 |
| Eco47I | GGWCC | 1 cut(s) | 982 |
| Eco57I | CTGAAG | 2 cut(s) | 224, 1137 |
| Eco88I | CYCGRG | 1 cut(s) | 581 |
| Eco91I | GGTNACC | 1 cut(s) | 335 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 225, 898 |
| EcoO65I | GGTNACC | 1 cut(s) | 335 |
| EcoRII | CCWGG | 2 cut(s) | 194, 984 |
| EcoT14I | CCWWGG | 1 cut(s) | 106 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 126 |
| ErhI | CCWWGG | 1 cut(s) | 106 |
| FaeI | CATG | 2 cut(s) | 128, 548 |
| FaiI | YATR | 9 cut(s) | 14, 122, 126, 236, 352, 513, 515, 517, 546 |
| FatI | CATG | 2 cut(s) | 124, 544 |
| FauI | CCCGC | 1 cut(s) | 828 |
| FblI | GTMKAC | 1 cut(s) | 489 |
| Fnu4HI | GCNGC | 2 cut(s) | 240, 762 |
| FokI | GGATG | 1 cut(s) | 1001 |
| Fsp4HI | GCNGC | 2 cut(s) | 240, 762 |
| FspBI | CTAG | 4 cut(s) | 107, 191, 210, 243 |
| GluI | GCNGC | 2 cut(s) | 240, 762 |
| GsaI | CCCAGC | 1 cut(s) | 258 |
| HaeIII | GGCC | 2 cut(s) | 105, 998 |
| HapII | CCGG | 3 cut(s) | 404, 457, 620 |
| HgaI | GACGC | 1 cut(s) | 1151 |
| Hin1I | GRCGYC | 2 cut(s) | 930, 1037 |
| Hin1II | CATG | 2 cut(s) | 128, 548 |
| HincII | GTYRAC | 1 cut(s) | 597 |
| HindII | GTYRAC | 1 cut(s) | 597 |
| HinfI | GANTC | 3 cut(s) | 367, 476, 870 |
| HpaII | CCGG | 3 cut(s) | 404, 457, 620 |
| HphI | GGTGA | 3 cut(s) | 347, 421, 850 |
| Hpy166II | GTNNAC | 4 cut(s) | 267, 490, 589, 597 |
| Hpy188I | TCNGA | 5 cut(s) | 435, 572, 798, 916, 1079 |
| Hpy188III | TCNNGA | 4 cut(s) | 221, 643, 922, 1006 |
| Hpy8I | GTNNAC | 4 cut(s) | 267, 490, 589, 597 |
| Hpy99I | CGWCG | 4 cut(s) | 696, 935, 956, 1042 |
| HpyCH4III | ACNGT | 3 cut(s) | 341, 378, 601 |
| HpyCH4IV | ACGT | 2 cut(s) | 930, 1037 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 124, 422, 761, 778, 810 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 146, 832, 1025 |
| HpyF3I | CTNAG | 3 cut(s) | 90, 434, 450 |
| HpySE526I | ACGT | 2 cut(s) | 930, 1037 |
| Hsp92I | GRCGYC | 2 cut(s) | 930, 1037 |
| Hsp92II | CATG | 2 cut(s) | 128, 548 |
| KroI | GCCGGC | 1 cut(s) | 619 |
| KroNI | GCCGGC | 1 cut(s) | 621 |
| Kzo9I | GATC | 3 cut(s) | 575, 688, 1074 |
| LguI | GCTCTTC | 1 cut(s) | 1049 |
| LmnI | GCTCC | 1 cut(s) | 890 |
| Lsp1109I | GCAGC | 2 cut(s) | 226, 773 |
| LweI | GCATC | 2 cut(s) | 13, 269 |
| MaeI | CTAG | 4 cut(s) | 107, 191, 210, 243 |
| MaeII | ACGT | 2 cut(s) | 930, 1037 |
| MaeIII | GTNAC | 3 cut(s) | 198, 335, 838 |
| MalI | GATC | 3 cut(s) | 577, 690, 1076 |
| MboI | GATC | 3 cut(s) | 575, 688, 1074 |
| MflI | RGATCY | 1 cut(s) | 1074 |
| MhlI | GDGCHC | 1 cut(s) | 857 |
| MluCI | AATT | 7 cut(s) | 128, 133, 181, 317, 702, 791, 876 |
| MluI | ACGCGT | 1 cut(s) | 1143 |
| MlyI | GAGTC | 2 cut(s) | 470, 864 |
| MmeI | TCCRAC | 2 cut(s) | 307, 550 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 126 |
| MroNI | GCCGGC | 1 cut(s) | 619 |
| MroXI | GAANNNNTTC | 1 cut(s) | 947 |
| MseI | TTAA | 6 cut(s) | 132, 387, 461, 498, 630, 879 |
| MspI | CCGG | 3 cut(s) | 404, 457, 620 |
| MspR9I | CCNGG | 2 cut(s) | 196, 986 |
| MssI | GTTTAAAC | 1 cut(s) | 388 |
| MvaI | CCWGG | 2 cut(s) | 196, 986 |
| MvnI | CGCG | 2 cut(s) | 980, 1145 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 146, 832, 1025 |
| NaeI | GCCGGC | 1 cut(s) | 621 |
| NdeII | GATC | 3 cut(s) | 575, 688, 1074 |
| NgoMIV | GCCGGC | 1 cut(s) | 619 |
| NlaIII | CATG | 2 cut(s) | 128, 548 |
| NlaIV | GGNNCC | 1 cut(s) | 892 |
| NmuCI | GTSAC | 2 cut(s) | 335, 838 |
| NsiI | ATGCAT | 2 cut(s) | 6, 126 |
| NspV | TTCGAA | 2 cut(s) | 563, 898 |
| PceI | AGGCCT | 1 cut(s) | 105 |
| PciSI | GCTCTTC | 1 cut(s) | 1049 |
| PdiI | GCCGGC | 1 cut(s) | 621 |
| PdmI | GAANNNNTTC | 1 cut(s) | 947 |
| PfeI | GAWTC | 1 cut(s) | 367 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 863 |
| PinAI | ACCGGT | 1 cut(s) | 456 |
| PkrI | GCNGC | 2 cut(s) | 241, 763 |
| PleI | GAGTC | 2 cut(s) | 470, 864 |
| PmeI | GTTTAAAC | 1 cut(s) | 388 |
| PpsI | GAGTC | 2 cut(s) | 470, 864 |
| PshBI | ATTAAT | 1 cut(s) | 879 |
| Psp6I | CCWGG | 2 cut(s) | 194, 984 |
| PspEI | GGTNACC | 1 cut(s) | 335 |
| PspFI | CCCAGC | 1 cut(s) | 254 |
| PspGI | CCWGG | 2 cut(s) | 194, 984 |
| PspN4I | GGNNCC | 1 cut(s) | 892 |
| PspPI | GGNCC | 1 cut(s) | 982 |
| PsuI | RGATCY | 1 cut(s) | 1074 |
| RsaI | GTAC | 2 cut(s) | 375, 666 |
| RsaNI | GTAC | 2 cut(s) | 374, 665 |
| SapI | GCTCTTC | 1 cut(s) | 1049 |
| SaqAI | TTAA | 6 cut(s) | 132, 387, 461, 498, 630, 879 |
| SatI | GCNGC | 2 cut(s) | 240, 762 |
| Sau3AI | GATC | 3 cut(s) | 575, 688, 1074 |
| Sau96I | GGNCC | 1 cut(s) | 982 |
| SchI | GAGTC | 2 cut(s) | 470, 864 |
| ScrFI | CCNGG | 2 cut(s) | 196, 986 |
| SduI | GDGCHC | 1 cut(s) | 857 |
| SfaNI | GCATC | 2 cut(s) | 13, 269 |
| SfuI | TTCGAA | 2 cut(s) | 563, 898 |
| SinI | GGWCC | 1 cut(s) | 982 |
| Sse9I | AATT | 7 cut(s) | 128, 133, 181, 317, 702, 791, 876 |
| SseBI | AGGCCT | 1 cut(s) | 105 |
| SsiI | CCGC | 5 cut(s) | 274, 835, 972, 980, 1063 |
| SspI | AATATT | 1 cut(s) | 883 |
| SspMI | CTAG | 4 cut(s) | 107, 191, 210, 243 |
| StuI | AGGCCT | 1 cut(s) | 105 |
| StyD4I | CCNGG | 2 cut(s) | 194, 984 |
| StyI | CCWWGG | 1 cut(s) | 106 |
| TaaI | ACNGT | 3 cut(s) | 341, 378, 601 |
| TaiI | ACGT | 2 cut(s) | 933, 1040 |
| TaqI | TCGA | 5 cut(s) | 563, 691, 898, 954, 1005 |
| TasI | AATT | 7 cut(s) | 128, 133, 181, 317, 702, 791, 876 |
| TfiI | GAWTC | 1 cut(s) | 367 |
| Tru1I | TTAA | 6 cut(s) | 132, 387, 461, 498, 630, 879 |
| Tru9I | TTAA | 6 cut(s) | 132, 387, 461, 498, 630, 879 |
| TscAI | CASTG | 2 cut(s) | 780, 812 |
| TseFI | GTSAC | 2 cut(s) | 335, 838 |
| TseI | GCWGC | 2 cut(s) | 239, 761 |
| Tsp45I | GTSAC | 2 cut(s) | 335, 838 |
| TspDTI | ATGAA | 3 cut(s) | 141, 744, 804 |
| TspGWI | ACGGA | 2 cut(s) | 307, 337 |
| TspRI | CASTG | 2 cut(s) | 780, 812 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 863 |
| VpaK11BI | GGWCC | 1 cut(s) | 982 |
| VspI | ATTAAT | 1 cut(s) | 879 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 225, 898 |
| XapI | RAATTY | 4 cut(s) | 128, 317, 702, 791 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 721 |
| XmaJI | CCTAGG | 1 cut(s) | 106 |
| XmiI | GTMKAC | 1 cut(s) | 489 |
| XmnI | GAANNNNTTC | 1 cut(s) | 947 |
| XspI | CTAG | 4 cut(s) | 107, 191, 210, 243 |
| ZraI | GACGTC | 2 cut(s) | 931, 1038 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 126 |