Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 787 |
| Acc65I | GGTACC | 2 cut(s) | 417, 526 |
| AccB1I | GGYRCC | 2 cut(s) | 417, 526 |
| AccBSI | CCGCTC | 2 cut(s) | 414, 1049 |
| AccI | GTMKAC | 1 cut(s) | 337 |
| AciI | CCGC | 5 cut(s) | 414, 488, 530, 983, 1049 |
| AfaI | GTAC | 6 cut(s) | 190, 401, 419, 472, 528, 586 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 540 |
| AflII | CTTAAG | 1 cut(s) | 715 |
| AflIII | ACRYGT | 1 cut(s) | 581 |
| AgsI | TTSAA | 7 cut(s) | 47, 55, 243, 724, 1037, 1091, 1097 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 893, 925 |
| AluBI | AGCT | 6 cut(s) | 590, 596, 648, 686, 720, 1019 |
| AluI | AGCT | 6 cut(s) | 590, 596, 648, 686, 720, 1019 |
| Alw26I | GTCTC | 2 cut(s) | 346, 647 |
| ApeKI | GCWGC | 1 cut(s) | 1121 |
| Asp718I | GGTACC | 2 cut(s) | 417, 526 |
| AspS9I | GGNCC | 1 cut(s) | 485 |
| AsuC2I | CCSGG | 1 cut(s) | 81 |
| AsuHPI | GGTGA | 4 cut(s) | 278, 656, 910, 1061 |
| AsuII | TTCGAA | 1 cut(s) | 71 |
| AvaII | GGWCC | 1 cut(s) | 485 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 510, 543 |
| BanI | GGYRCC | 2 cut(s) | 417, 526 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 383, 401, 415, 433 |
| BbsI | GAAGAC | 3 cut(s) | 329, 524, 696 |
| BbvI | GCAGC | 1 cut(s) | 1133 |
| BccI | CCATC | 4 cut(s) | 83, 200, 265, 1071 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 447, 481 |
| BcnI | CCSGG | 1 cut(s) | 81 |
| BcoDI | GTCTC | 2 cut(s) | 346, 647 |
| BfaI | CTAG | 4 cut(s) | 86, 447, 522, 993 |
| BfrI | CTTAAG | 1 cut(s) | 715 |
| BfuAI | ACCTGC | 1 cut(s) | 787 |
| BisI | GCNGC | 2 cut(s) | 984, 1122 |
| BlsI | GCNGC | 2 cut(s) | 985, 1123 |
| Bme1390I | CCNGG | 1 cut(s) | 81 |
| Bme18I | GGWCC | 1 cut(s) | 485 |
| BmgT120I | GGNCC | 1 cut(s) | 485 |
| BmiI | GGNNCC | 3 cut(s) | 419, 486, 528 |
| BmrFI | CCNGG | 1 cut(s) | 81 |
| BmrI | ACTGGG | 1 cut(s) | 904 |
| BmsI | GCATC | 2 cut(s) | 467, 564 |
| BmuI | ACTGGG | 1 cut(s) | 904 |
| BpiI | GAAGAC | 3 cut(s) | 329, 524, 696 |
| Bpu14I | TTCGAA | 1 cut(s) | 71 |
| BpuMI | CCSGG | 1 cut(s) | 81 |
| Bsa29I | ATCGAT | 1 cut(s) | 258 |
| BsaAI | YACGTR | 1 cut(s) | 584 |
| BsaJI | CCNNGG | 2 cut(s) | 80, 1072 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 260, 290 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 540 |
| Bse1I | ACTGG | 2 cut(s) | 221, 899 |
| Bse3DI | GCAATG | 2 cut(s) | 164, 676 |
| BseCI | ATCGAT | 1 cut(s) | 258 |
| BseDI | CCNNGG | 2 cut(s) | 80, 1072 |
| BseGI | GGATG | 3 cut(s) | 40, 145, 1082 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 540 |
| BseMI | GCAATG | 2 cut(s) | 164, 676 |
| BseMII | CTCAG | 3 cut(s) | 186, 335, 1029 |
| BseNI | ACTGG | 2 cut(s) | 221, 899 |
| BseRI | GAGGAG | 2 cut(s) | 281, 929 |
| BseXI | GCAGC | 1 cut(s) | 1133 |
| BseYI | CCCAGC | 2 cut(s) | 490, 682 |
| BshNI | GGYRCC | 2 cut(s) | 417, 526 |
| BshVI | ATCGAT | 1 cut(s) | 258 |
| BsiSI | CCGG | 1 cut(s) | 80 |
| BslFI | GGGAC | 1 cut(s) | 498 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 540 |
| BsmAI | GTCTC | 2 cut(s) | 346, 647 |
| BsmFI | GGGAC | 1 cut(s) | 498 |
| Bsp119I | TTCGAA | 1 cut(s) | 71 |
| Bsp143I | GATC | 2 cut(s) | 255, 364 |
| BspACI | CCGC | 5 cut(s) | 414, 488, 530, 983, 1049 |
| BspCNI | CTCAG | 3 cut(s) | 185, 336, 1028 |
| BspDI | ATCGAT | 1 cut(s) | 258 |
| BspLI | GGNNCC | 3 cut(s) | 419, 486, 528 |
| BspMI | ACCTGC | 1 cut(s) | 787 |
| BspQI | GCTCTTC | 1 cut(s) | 404 |
| BspT104I | TTCGAA | 1 cut(s) | 71 |
| BspT107I | GGYRCC | 2 cut(s) | 417, 526 |
| BspTI | CTTAAG | 1 cut(s) | 715 |
| BsrBI | CCGCTC | 2 cut(s) | 414, 1049 |
| BsrDI | GCAATG | 2 cut(s) | 164, 676 |
| BsrI | ACTGG | 2 cut(s) | 221, 899 |
| BssECI | CCNNGG | 2 cut(s) | 80, 1072 |
| BssMI | GATC | 2 cut(s) | 255, 364 |
| BssNAI | GTATAC | 1 cut(s) | 338 |
| BssT1I | CCWWGG | 1 cut(s) | 1072 |
| Bst1107I | GTATAC | 1 cut(s) | 338 |
| Bst4CI | ACNGT | 2 cut(s) | 310, 475 |
| Bst6I | CTCTTC | 4 cut(s) | 291, 404, 598, 896 |
| BstAFI | CTTAAG | 1 cut(s) | 715 |
| BstBAI | YACGTR | 1 cut(s) | 584 |
| BstBI | TTCGAA | 1 cut(s) | 71 |
| BstC8I | GCNNGC | 2 cut(s) | 560, 1051 |
| BstDEI | CTNAG | 3 cut(s) | 172, 344, 1015 |
| BstF5I | GGATG | 3 cut(s) | 40, 145, 1082 |
| BstKTI | GATC | 2 cut(s) | 258, 367 |
| BstMAI | GTCTC | 2 cut(s) | 346, 647 |
| BstMBI | GATC | 2 cut(s) | 255, 364 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 989, 1016, 1046 |
| BstNSI | RCATGY | 1 cut(s) | 1010 |
| BstSCI | CCNGG | 1 cut(s) | 79 |
| BstV1I | GCAGC | 1 cut(s) | 1133 |
| BstV2I | GAAGAC | 3 cut(s) | 329, 524, 696 |
| BstZ17I | GTATAC | 1 cut(s) | 338 |
| Bsu15I | ATCGAT | 1 cut(s) | 258 |
| BsuTUI | ATCGAT | 1 cut(s) | 258 |
| BtsCI | GGATG | 3 cut(s) | 40, 145, 1082 |
| BtsI | GCAGTG | 1 cut(s) | 159 |
| BtsIMutI | CAGTG | 2 cut(s) | 159, 341 |
| BveI | ACCTGC | 1 cut(s) | 787 |
| Cac8I | GCNNGC | 2 cut(s) | 560, 1051 |
| Cfr13I | GGNCC | 1 cut(s) | 485 |
| ClaI | ATCGAT | 1 cut(s) | 258 |
| CseI | GACGC | 1 cut(s) | 220 |
| Csp6I | GTAC | 6 cut(s) | 189, 400, 418, 471, 527, 585 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 330, 365 |
| CviAII | CATG | 7 cut(s) | 102, 422, 640, 740, 759, 814, 1007 |
| CviQI | GTAC | 6 cut(s) | 189, 400, 418, 471, 527, 585 |
| DdeI | CTNAG | 3 cut(s) | 172, 344, 1015 |
| DpnI | GATC | 2 cut(s) | 257, 366 |
| DpnII | GATC | 2 cut(s) | 255, 364 |
| DraI | TTTAAA | 1 cut(s) | 673 |
| Eam1104I | CTCTTC | 4 cut(s) | 291, 404, 598, 896 |
| EarI | CTCTTC | 4 cut(s) | 291, 404, 598, 896 |
| Eco130I | CCWWGG | 1 cut(s) | 1072 |
| Eco47I | GGWCC | 1 cut(s) | 485 |
| EcoT14I | CCWWGG | 1 cut(s) | 1072 |
| EcoT22I | ATGCAT | 2 cut(s) | 427, 760 |
| ErhI | CCWWGG | 1 cut(s) | 1072 |
| FaeI | CATG | 7 cut(s) | 105, 425, 643, 743, 762, 817, 1010 |
| FaqI | GGGAC | 1 cut(s) | 498 |
| FatI | CATG | 7 cut(s) | 101, 421, 639, 739, 758, 813, 1006 |
| FauI | CCCGC | 2 cut(s) | 407, 1042 |
| FauNDI | CATATG | 2 cut(s) | 205, 236 |
| FblI | GTMKAC | 1 cut(s) | 337 |
| Fnu4HI | GCNGC | 2 cut(s) | 984, 1122 |
| FokI | GGATG | 3 cut(s) | 47, 152, 1089 |
| Fsp4HI | GCNGC | 2 cut(s) | 984, 1122 |
| FspBI | CTAG | 4 cut(s) | 86, 447, 522, 993 |
| GluI | GCNGC | 2 cut(s) | 984, 1122 |
| GsaI | CCCAGC | 2 cut(s) | 494, 686 |
| HapII | CCGG | 1 cut(s) | 80 |
| HgaI | GACGC | 1 cut(s) | 220 |
| Hin1II | CATG | 7 cut(s) | 105, 425, 643, 743, 762, 817, 1010 |
| HincII | GTYRAC | 1 cut(s) | 733 |
| HindII | GTYRAC | 1 cut(s) | 733 |
| HindIII | AAGCTT | 1 cut(s) | 718 |
| HinfI | GANTC | 3 cut(s) | 170, 217, 1103 |
| HpaII | CCGG | 1 cut(s) | 80 |
| HphI | GGTGA | 4 cut(s) | 278, 656, 910, 1061 |
| Hpy166II | GTNNAC | 4 cut(s) | 306, 338, 733, 892 |
| Hpy188I | TCNGA | 2 cut(s) | 114, 175 |
| Hpy188III | TCNNGA | 2 cut(s) | 121, 167 |
| Hpy8I | GTNNAC | 4 cut(s) | 306, 338, 733, 892 |
| HpyAV | CCTTC | 2 cut(s) | 127, 385 |
| HpyCH4III | ACNGT | 2 cut(s) | 310, 475 |
| HpyCH4IV | ACGT | 1 cut(s) | 583 |
| HpyCH4V | TGCA | 7 cut(s) | 64, 157, 332, 425, 458, 743, 758 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 989, 1016, 1046 |
| HpyF3I | CTNAG | 3 cut(s) | 172, 344, 1015 |
| HpySE526I | ACGT | 1 cut(s) | 583 |
| Hsp92II | CATG | 7 cut(s) | 105, 425, 643, 743, 762, 817, 1010 |
| KpnI | GGTACC | 2 cut(s) | 421, 530 |
| Kzo9I | GATC | 2 cut(s) | 255, 364 |
| LguI | GCTCTTC | 1 cut(s) | 404 |
| LmnI | GCTCC | 2 cut(s) | 149, 793 |
| Lsp1109I | GCAGC | 1 cut(s) | 1133 |
| LweI | GCATC | 2 cut(s) | 467, 564 |
| MaeI | CTAG | 4 cut(s) | 86, 447, 522, 993 |
| MaeII | ACGT | 1 cut(s) | 583 |
| MaeIII | GTNAC | 6 cut(s) | 199, 208, 612, 842, 1056, 1100 |
| MalI | GATC | 2 cut(s) | 257, 366 |
| MbiI | CCGCTC | 2 cut(s) | 414, 1049 |
| MboI | GATC | 2 cut(s) | 255, 364 |
| MluCI | AATT | 3 cut(s) | 477, 690, 1092 |
| MlyI | GAGTC | 2 cut(s) | 164, 1097 |
| MmeI | TCCRAC | 2 cut(s) | 127, 756 |
| Mph1103I | ATGCAT | 2 cut(s) | 427, 760 |
| MseI | TTAA | 6 cut(s) | 623, 672, 689, 716, 752, 1023 |
| MspA1I | CMGCKG | 1 cut(s) | 490 |
| MspCI | CTTAAG | 1 cut(s) | 715 |
| MspI | CCGG | 1 cut(s) | 80 |
| MspR9I | CCNGG | 1 cut(s) | 81 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 989, 1016, 1046 |
| NciI | CCSGG | 1 cut(s) | 81 |
| NdeI | CATATG | 2 cut(s) | 205, 236 |
| NdeII | GATC | 2 cut(s) | 255, 364 |
| NlaIII | CATG | 7 cut(s) | 105, 425, 643, 743, 762, 817, 1010 |
| NlaIV | GGNNCC | 3 cut(s) | 419, 486, 528 |
| NmuCI | GTSAC | 2 cut(s) | 208, 1100 |
| NsiI | ATGCAT | 2 cut(s) | 427, 760 |
| NspI | RCATGY | 1 cut(s) | 1010 |
| NspV | TTCGAA | 1 cut(s) | 71 |
| PciSI | GCTCTTC | 1 cut(s) | 404 |
| PfeI | GAWTC | 1 cut(s) | 217 |
| PkrI | GCNGC | 2 cut(s) | 985, 1123 |
| PleI | GAGTC | 2 cut(s) | 164, 1097 |
| PpsI | GAGTC | 2 cut(s) | 164, 1097 |
| Ppu21I | YACGTR | 1 cut(s) | 584 |
| PspFI | CCCAGC | 2 cut(s) | 490, 682 |
| PspN4I | GGNNCC | 3 cut(s) | 419, 486, 528 |
| PspPI | GGNCC | 1 cut(s) | 485 |
| RsaI | GTAC | 6 cut(s) | 190, 401, 419, 472, 528, 586 |
| RsaNI | GTAC | 6 cut(s) | 189, 400, 418, 471, 527, 585 |
| SapI | GCTCTTC | 1 cut(s) | 404 |
| SaqAI | TTAA | 6 cut(s) | 623, 672, 689, 716, 752, 1023 |
| SatI | GCNGC | 2 cut(s) | 984, 1122 |
| Sau3AI | GATC | 2 cut(s) | 255, 364 |
| Sau96I | GGNCC | 1 cut(s) | 485 |
| SchI | GAGTC | 2 cut(s) | 164, 1097 |
| ScrFI | CCNGG | 1 cut(s) | 81 |
| SfaNI | GCATC | 2 cut(s) | 467, 564 |
| SfuI | TTCGAA | 1 cut(s) | 71 |
| SinI | GGWCC | 1 cut(s) | 485 |
| SmlI | CTYRAG | 1 cut(s) | 715 |
| SmoI | CTYRAG | 1 cut(s) | 715 |
| Sse9I | AATT | 3 cut(s) | 477, 690, 1092 |
| SsiI | CCGC | 5 cut(s) | 414, 488, 530, 983, 1049 |
| SspI | AATATT | 2 cut(s) | 454, 850 |
| SspMI | CTAG | 4 cut(s) | 86, 447, 522, 993 |
| StyD4I | CCNGG | 1 cut(s) | 79 |
| StyI | CCWWGG | 1 cut(s) | 1072 |
| TaaI | ACNGT | 2 cut(s) | 310, 475 |
| TaiI | ACGT | 1 cut(s) | 586 |
| TaqI | TCGA | 5 cut(s) | 71, 258, 467, 565, 837 |
| TasI | AATT | 3 cut(s) | 477, 690, 1092 |
| TatI | WGTACW | 1 cut(s) | 399 |
| TauI | GCSGC | 1 cut(s) | 986 |
| TfiI | GAWTC | 1 cut(s) | 217 |
| Tru1I | TTAA | 6 cut(s) | 623, 672, 689, 716, 752, 1023 |
| Tru9I | TTAA | 6 cut(s) | 623, 672, 689, 716, 752, 1023 |
| TscAI | CASTG | 2 cut(s) | 159, 348 |
| TseFI | GTSAC | 2 cut(s) | 208, 1100 |
| TseI | GCWGC | 1 cut(s) | 1121 |
| Tsp45I | GTSAC | 2 cut(s) | 208, 1100 |
| TspDTI | ATGAA | 6 cut(s) | 17, 223, 330, 422, 628, 802 |
| TspGWI | ACGGA | 1 cut(s) | 219 |
| TspRI | CASTG | 2 cut(s) | 159, 348 |
| Vha464I | CTTAAG | 1 cut(s) | 715 |
| VpaK11BI | GGWCC | 1 cut(s) | 485 |
| XceI | RCATGY | 1 cut(s) | 1010 |
| XmiI | GTMKAC | 1 cut(s) | 337 |
| XspI | CTAG | 4 cut(s) | 86, 447, 522, 993 |
| Zsp2I | ATGCAT | 2 cut(s) | 427, 760 |