Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 735, 748 |
| AcsI | RAATTY | 2 cut(s) | 394, 972 |
| AcuI | CTGAAG | 2 cut(s) | 244, 954 |
| AfaI | GTAC | 2 cut(s) | 629, 661 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 45, 46, 687, 871 |
| AflII | CTTAAG | 1 cut(s) | 919 |
| AgsI | TTSAA | 3 cut(s) | 82, 881, 915 |
| AjnI | CCWGG | 2 cut(s) | 147, 337 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 86, 118 |
| AluBI | AGCT | 5 cut(s) | 97, 278, 509, 815, 992 |
| AluI | AGCT | 5 cut(s) | 97, 278, 509, 815, 992 |
| Alw21I | GWGCWC | 1 cut(s) | 932 |
| Alw26I | GTCTC | 2 cut(s) | 359, 388 |
| AlwI | GGATC | 2 cut(s) | 735, 748 |
| AoxI | GGCC | 2 cut(s) | 90, 802 |
| ApeKI | GCWGC | 3 cut(s) | 152, 665, 989 |
| ApoI | RAATTY | 2 cut(s) | 394, 972 |
| AspLEI | GCGC | 1 cut(s) | 597 |
| AspS9I | GGNCC | 1 cut(s) | 90 |
| AsuC2I | CCSGG | 1 cut(s) | 107 |
| AsuHPI | GGTGA | 2 cut(s) | 236, 487 |
| AsuII | TTCGAA | 1 cut(s) | 712 |
| AxyI | CCTNAGG | 1 cut(s) | 612 |
| BamHI | GGATCC | 1 cut(s) | 740 |
| BbsI | GAAGAC | 1 cut(s) | 719 |
| Bbv12I | GWGCWC | 1 cut(s) | 932 |
| BbvI | GCAGC | 3 cut(s) | 164, 677, 1001 |
| BccI | CCATC | 3 cut(s) | 585, 772, 964 |
| BciT130I | CCWGG | 2 cut(s) | 149, 339 |
| BcnI | CCSGG | 1 cut(s) | 107 |
| BcoDI | GTCTC | 2 cut(s) | 359, 388 |
| BfaI | CTAG | 1 cut(s) | 350 |
| BfmI | CTRYAG | 1 cut(s) | 663 |
| BfrI | CTTAAG | 1 cut(s) | 919 |
| BglII | AGATCT | 1 cut(s) | 374 |
| BisI | GCNGC | 3 cut(s) | 153, 666, 990 |
| BlsI | GCNGC | 3 cut(s) | 154, 667, 991 |
| Bme1390I | CCNGG | 3 cut(s) | 107, 149, 339 |
| BmgT120I | GGNCC | 1 cut(s) | 90 |
| BmiI | GGNNCC | 2 cut(s) | 517, 742 |
| BmrFI | CCNGG | 3 cut(s) | 107, 149, 339 |
| BmsI | GCATC | 2 cut(s) | 318, 976 |
| BpiI | GAAGAC | 1 cut(s) | 719 |
| Bpu14I | TTCGAA | 1 cut(s) | 712 |
| BpuMI | CCSGG | 1 cut(s) | 107 |
| BsaBI | GATNNNNATC | 1 cut(s) | 54 |
| BsaI | GGTCTC | 1 cut(s) | 359 |
| BsaJI | CCNNGG | 3 cut(s) | 117, 285, 338 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 845, 875 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 45, 46, 687, 871 |
| Bse21I | CCTNAGG | 1 cut(s) | 612 |
| Bse3DI | GCAATG | 1 cut(s) | 136 |
| Bse8I | GATNNNNATC | 1 cut(s) | 54 |
| BseBI | CCWGG | 2 cut(s) | 149, 339 |
| BseDI | CCNNGG | 3 cut(s) | 117, 285, 338 |
| BseGI | GGATG | 2 cut(s) | 596, 956 |
| BseJI | GATNNNNATC | 1 cut(s) | 54 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 45, 46, 687, 871 |
| BseMI | GCAATG | 1 cut(s) | 136 |
| BseMII | CTCAG | 3 cut(s) | 177, 467, 626 |
| BseRI | GAGGAG | 1 cut(s) | 823 |
| BseXI | GCAGC | 3 cut(s) | 164, 677, 1001 |
| BshFI | GGCC | 2 cut(s) | 92, 804 |
| BsiHKAI | GWGCWC | 1 cut(s) | 932 |
| BsiSI | CCGG | 1 cut(s) | 107 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 45, 46, 687, 871 |
| BsmAI | GTCTC | 2 cut(s) | 359, 388 |
| BsnI | GGCC | 2 cut(s) | 92, 804 |
| Bso31I | GGTCTC | 1 cut(s) | 359 |
| Bsp119I | TTCGAA | 1 cut(s) | 712 |
| Bsp1286I | GDGCHC | 1 cut(s) | 932 |
| Bsp143I | GATC | 3 cut(s) | 374, 740, 796 |
| BspANI | GGCC | 2 cut(s) | 92, 804 |
| BspCNI | CTCAG | 3 cut(s) | 176, 466, 625 |
| BspLI | GGNNCC | 2 cut(s) | 517, 742 |
| BspMAI | CTGCAG | 1 cut(s) | 667 |
| BspPI | GGATC | 2 cut(s) | 735, 748 |
| BspT104I | TTCGAA | 1 cut(s) | 712 |
| BspTI | CTTAAG | 1 cut(s) | 919 |
| BspTNI | GGTCTC | 1 cut(s) | 359 |
| BsrDI | GCAATG | 1 cut(s) | 136 |
| BssECI | CCNNGG | 3 cut(s) | 117, 285, 338 |
| BssMI | GATC | 3 cut(s) | 374, 740, 796 |
| BssT1I | CCWWGG | 1 cut(s) | 117 |
| Bst2UI | CCWGG | 2 cut(s) | 149, 339 |
| Bst4CI | ACNGT | 1 cut(s) | 706 |
| Bst6I | CTCTTC | 1 cut(s) | 579 |
| BstAFI | CTTAAG | 1 cut(s) | 919 |
| BstBI | TTCGAA | 1 cut(s) | 712 |
| BstC8I | GCNNGC | 1 cut(s) | 460 |
| BstDEI | CTNAG | 3 cut(s) | 163, 453, 612 |
| BstF5I | GGATG | 2 cut(s) | 596, 956 |
| BstHHI | GCGC | 1 cut(s) | 597 |
| BstKTI | GATC | 3 cut(s) | 377, 743, 799 |
| BstMAI | GTCTC | 2 cut(s) | 359, 388 |
| BstMBI | GATC | 3 cut(s) | 374, 740, 796 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 644, 776 |
| BstNI | CCWGG | 2 cut(s) | 149, 339 |
| BstNSI | RCATGY | 1 cut(s) | 296 |
| BstSCI | CCNGG | 3 cut(s) | 105, 147, 337 |
| BstSFI | CTRYAG | 1 cut(s) | 663 |
| BstV1I | GCAGC | 3 cut(s) | 164, 677, 1001 |
| BstV2I | GAAGAC | 1 cut(s) | 719 |
| BstX2I | RGATCY | 2 cut(s) | 374, 740 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 706 |
| BstYI | RGATCY | 2 cut(s) | 374, 740 |
| Bsu36I | CCTNAGG | 1 cut(s) | 612 |
| BsuRI | GGCC | 2 cut(s) | 92, 804 |
| BtgZI | GCGATG | 1 cut(s) | 341 |
| BtsCI | GGATG | 2 cut(s) | 596, 956 |
| BtsIMutI | CAGTG | 1 cut(s) | 711 |
| Cac8I | GCNNGC | 1 cut(s) | 460 |
| CfoI | GCGC | 1 cut(s) | 597 |
| Cfr13I | GGNCC | 1 cut(s) | 90 |
| Csp6I | GTAC | 2 cut(s) | 628, 660 |
| CviAII | CATG | 3 cut(s) | 293, 643, 967 |
| CviQI | GTAC | 2 cut(s) | 628, 660 |
| DdeI | CTNAG | 3 cut(s) | 163, 453, 612 |
| DpnI | GATC | 3 cut(s) | 376, 742, 798 |
| DpnII | GATC | 3 cut(s) | 374, 740, 796 |
| DraI | TTTAAA | 1 cut(s) | 393 |
| Eam1104I | CTCTTC | 1 cut(s) | 579 |
| EarI | CTCTTC | 1 cut(s) | 579 |
| Eco130I | CCWWGG | 1 cut(s) | 117 |
| Eco31I | GGTCTC | 1 cut(s) | 359 |
| Eco57I | CTGAAG | 2 cut(s) | 244, 954 |
| Eco81I | CCTNAGG | 1 cut(s) | 612 |
| EcoRII | CCWGG | 2 cut(s) | 147, 337 |
| EcoT14I | CCWWGG | 1 cut(s) | 117 |
| ErhI | CCWWGG | 1 cut(s) | 117 |
| FaeI | CATG | 3 cut(s) | 296, 646, 970 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 714, 746 |
| FatI | CATG | 3 cut(s) | 292, 642, 966 |
| Fnu4HI | GCNGC | 3 cut(s) | 153, 666, 990 |
| FokI | GGATG | 2 cut(s) | 603, 943 |
| Fsp4HI | GCNGC | 3 cut(s) | 153, 666, 990 |
| FspBI | CTAG | 1 cut(s) | 350 |
| GlaI | GCGC | 1 cut(s) | 596 |
| GluI | GCNGC | 3 cut(s) | 153, 666, 990 |
| HaeIII | GGCC | 2 cut(s) | 92, 804 |
| HapII | CCGG | 1 cut(s) | 107 |
| HhaI | GCGC | 1 cut(s) | 597 |
| Hin1II | CATG | 3 cut(s) | 296, 646, 970 |
| Hin6I | GCGC | 1 cut(s) | 595 |
| HinP1I | GCGC | 1 cut(s) | 595 |
| HindIII | AAGCTT | 1 cut(s) | 276 |
| HinfI | GANTC | 9 cut(s) | 55, 161, 184, 241, 436, 677, 695, 848, 854 |
| HpaII | CCGG | 1 cut(s) | 107 |
| HphI | GGTGA | 2 cut(s) | 236, 487 |
| Hpy166II | GTNNAC | 1 cut(s) | 319 |
| Hpy188I | TCNGA | 5 cut(s) | 166, 263, 289, 853, 934 |
| Hpy8I | GTNNAC | 1 cut(s) | 319 |
| HpyCH4III | ACNGT | 1 cut(s) | 706 |
| HpyCH4V | TGCA | 5 cut(s) | 331, 638, 665, 779, 989 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 644, 776 |
| HpyF3I | CTNAG | 3 cut(s) | 163, 453, 612 |
| Hsp92II | CATG | 3 cut(s) | 296, 646, 970 |
| HspAI | GCGC | 1 cut(s) | 595 |
| Kzo9I | GATC | 3 cut(s) | 374, 740, 796 |
| LmnI | GCTCC | 1 cut(s) | 289 |
| Lsp1109I | GCAGC | 3 cut(s) | 164, 677, 1001 |
| LweI | GCATC | 2 cut(s) | 318, 976 |
| MaeI | CTAG | 1 cut(s) | 350 |
| MalI | GATC | 3 cut(s) | 376, 742, 798 |
| MboI | GATC | 3 cut(s) | 374, 740, 796 |
| MboII | GAAGA | 7 cut(s) | 94, 250, 384, 566, 719, 810, 947 |
| MflI | RGATCY | 2 cut(s) | 374, 740 |
| MhlI | GDGCHC | 1 cut(s) | 932 |
| MluCI | AATT | 7 cut(s) | 7, 43, 343, 394, 411, 584, 972 |
| MlyI | GAGTC | 3 cut(s) | 155, 671, 848 |
| MmeI | TCCRAC | 4 cut(s) | 413, 723, 825, 972 |
| MseI | TTAA | 6 cut(s) | 392, 426, 546, 564, 920, 1006 |
| MslI | CAYNNNNRTG | 2 cut(s) | 249, 297 |
| MspCI | CTTAAG | 1 cut(s) | 919 |
| MspI | CCGG | 1 cut(s) | 107 |
| MspR9I | CCNGG | 3 cut(s) | 107, 149, 339 |
| MvaI | CCWGG | 2 cut(s) | 149, 339 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 644, 776 |
| NciI | CCSGG | 1 cut(s) | 107 |
| NdeII | GATC | 3 cut(s) | 374, 740, 796 |
| NlaIII | CATG | 3 cut(s) | 296, 646, 970 |
| NlaIV | GGNNCC | 2 cut(s) | 517, 742 |
| NspI | RCATGY | 1 cut(s) | 296 |
| NspV | TTCGAA | 1 cut(s) | 712 |
| PfeI | GAWTC | 6 cut(s) | 55, 184, 241, 436, 695, 848 |
| PfoI | TCCNGGA | 1 cut(s) | 105 |
| PkrI | GCNGC | 3 cut(s) | 154, 667, 991 |
| PleI | GAGTC | 3 cut(s) | 155, 671, 848 |
| PpsI | GAGTC | 3 cut(s) | 155, 671, 848 |
| Psp6I | CCWGG | 2 cut(s) | 147, 337 |
| PspGI | CCWGG | 2 cut(s) | 147, 337 |
| PspN4I | GGNNCC | 2 cut(s) | 517, 742 |
| PspPI | GGNCC | 1 cut(s) | 90 |
| PstI | CTGCAG | 1 cut(s) | 667 |
| PsuI | RGATCY | 2 cut(s) | 374, 740 |
| RsaI | GTAC | 2 cut(s) | 629, 661 |
| RsaNI | GTAC | 2 cut(s) | 628, 660 |
| RseI | CAYNNNNRTG | 2 cut(s) | 249, 297 |
| SaqAI | TTAA | 6 cut(s) | 392, 426, 546, 564, 920, 1006 |
| SatI | GCNGC | 3 cut(s) | 153, 666, 990 |
| Sau3AI | GATC | 3 cut(s) | 374, 740, 796 |
| Sau96I | GGNCC | 1 cut(s) | 90 |
| SchI | GAGTC | 3 cut(s) | 155, 671, 848 |
| ScrFI | CCNGG | 3 cut(s) | 107, 149, 339 |
| SduI | GDGCHC | 1 cut(s) | 932 |
| SfaNI | GCATC | 2 cut(s) | 318, 976 |
| SfcI | CTRYAG | 1 cut(s) | 663 |
| SfuI | TTCGAA | 1 cut(s) | 712 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 249, 297 |
| SmlI | CTYRAG | 1 cut(s) | 919 |
| SmoI | CTYRAG | 1 cut(s) | 919 |
| Sse9I | AATT | 7 cut(s) | 7, 43, 343, 394, 411, 584, 972 |
| SspMI | CTAG | 1 cut(s) | 350 |
| StyD4I | CCNGG | 3 cut(s) | 105, 147, 337 |
| StyI | CCWWGG | 1 cut(s) | 117 |
| TaaI | ACNGT | 1 cut(s) | 706 |
| TaqI | TCGA | 1 cut(s) | 712 |
| TasI | AATT | 7 cut(s) | 7, 43, 343, 394, 411, 584, 972 |
| TatI | WGTACW | 1 cut(s) | 627 |
| TfiI | GAWTC | 6 cut(s) | 55, 184, 241, 436, 695, 848 |
| Tru1I | TTAA | 6 cut(s) | 392, 426, 546, 564, 920, 1006 |
| Tru9I | TTAA | 6 cut(s) | 392, 426, 546, 564, 920, 1006 |
| TscAI | CASTG | 1 cut(s) | 711 |
| TseI | GCWGC | 3 cut(s) | 152, 665, 989 |
| TspDTI | ATGAA | 4 cut(s) | 17, 60, 315, 388 |
| TspRI | CASTG | 1 cut(s) | 711 |
| Vha464I | CTTAAG | 1 cut(s) | 919 |
| XapI | RAATTY | 2 cut(s) | 394, 972 |
| XceI | RCATGY | 1 cut(s) | 296 |
| XspI | CTAG | 1 cut(s) | 350 |