Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1064 |
| AarI | CACCTGC | 1 cut(s) | 574 |
| Acc36I | ACCTGC | 1 cut(s) | 574 |
| AccB1I | GGYRCC | 1 cut(s) | 920 |
| AccI | GTMKAC | 1 cut(s) | 815 |
| AciI | CCGC | 1 cut(s) | 1354 |
| AclWI | GGATC | 6 cut(s) | 171, 470, 602, 875, 936, 1037 |
| AcoI | YGGCCR | 1 cut(s) | 11 |
| AcsI | RAATTY | 2 cut(s) | 16, 635 |
| AcuI | CTGAAG | 4 cut(s) | 143, 206, 290, 771 |
| AfaI | GTAC | 5 cut(s) | 205, 431, 483, 719, 909 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 130, 319, 977, 1052 |
| AflII | CTTAAG | 1 cut(s) | 1025 |
| AgeI | ACCGGT | 1 cut(s) | 1052 |
| AjnI | CCWGG | 2 cut(s) | 348, 590 |
| AleI | CACNNNNGTG | 1 cut(s) | 437 |
| AluBI | AGCT | 8 cut(s) | 278, 402, 511, 681, 766, 1034, 1210, 1396 |
| AluI | AGCT | 8 cut(s) | 278, 402, 511, 681, 766, 1034, 1210, 1396 |
| Alw26I | GTCTC | 2 cut(s) | 515, 736 |
| AlwI | GGATC | 6 cut(s) | 171, 470, 602, 875, 936, 1037 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 479 |
| AoxI | GGCC | 3 cut(s) | 11, 26, 788 |
| ApeKI | GCWGC | 3 cut(s) | 287, 1031, 1351 |
| ApoI | RAATTY | 2 cut(s) | 16, 635 |
| AsiGI | ACCGGT | 1 cut(s) | 1052 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 981 |
| AspS9I | GGNCC | 4 cut(s) | 310, 352, 491, 789 |
| AsuC2I | CCSGG | 1 cut(s) | 925 |
| AsuHPI | GGTGA | 4 cut(s) | 113, 155, 344, 386 |
| AvaII | GGWCC | 3 cut(s) | 310, 352, 491 |
| BanI | GGYRCC | 1 cut(s) | 920 |
| BauI | CACGAG | 1 cut(s) | 780 |
| BbsI | GAAGAC | 6 cut(s) | 149, 212, 296, 704, 999, 1170 |
| BbvI | GCAGC | 3 cut(s) | 274, 1043, 1363 |
| BccI | CCATC | 2 cut(s) | 896, 1082 |
| BciT130I | CCWGG | 2 cut(s) | 350, 592 |
| BciVI | GTATCC | 1 cut(s) | 356 |
| BcnI | CCSGG | 1 cut(s) | 925 |
| BcoDI | GTCTC | 2 cut(s) | 515, 736 |
| BfaI | CTAG | 4 cut(s) | 399, 767, 932, 1301 |
| BfmI | CTRYAG | 1 cut(s) | 1397 |
| BfrI | CTTAAG | 1 cut(s) | 1025 |
| BfuAI | ACCTGC | 1 cut(s) | 574 |
| BfuI | GTATCC | 1 cut(s) | 356 |
| BisI | GCNGC | 3 cut(s) | 288, 1032, 1352 |
| BlsI | GCNGC | 3 cut(s) | 289, 1033, 1353 |
| BmcAI | AGTACT | 2 cut(s) | 205, 719 |
| Bme1390I | CCNGG | 3 cut(s) | 350, 592, 925 |
| Bme18I | GGWCC | 3 cut(s) | 310, 352, 491 |
| BmgT120I | GGNCC | 4 cut(s) | 310, 352, 491, 789 |
| BmiI | GGNNCC | 4 cut(s) | 455, 849, 922, 969 |
| BmrFI | CCNGG | 3 cut(s) | 350, 592, 925 |
| BmsI | GCATC | 3 cut(s) | 613, 635, 1338 |
| BpiI | GAAGAC | 6 cut(s) | 149, 212, 296, 704, 999, 1170 |
| BpuEI | CTTGAG | 1 cut(s) | 433 |
| BpuMI | CCSGG | 1 cut(s) | 925 |
| BsaJI | CCNNGG | 2 cut(s) | 487, 924 |
| BsaWI | WCCGGW | 1 cut(s) | 1052 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 24, 54, 1278, 1308 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 130, 319, 977, 1052 |
| Bse118I | RCCGGY | 2 cut(s) | 242, 1052 |
| Bse1I | ACTGG | 1 cut(s) | 324 |
| Bse3DI | GCAATG | 1 cut(s) | 373 |
| BseBI | CCWGG | 2 cut(s) | 350, 592 |
| BseDI | CCNNGG | 2 cut(s) | 487, 924 |
| BseGI | GGATG | 2 cut(s) | 745, 1264 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 130, 319, 977, 1052 |
| BseMI | GCAATG | 1 cut(s) | 373 |
| BseMII | CTCAG | 3 cut(s) | 67, 834, 1329 |
| BseNI | ACTGG | 1 cut(s) | 324 |
| BseXI | GCAGC | 3 cut(s) | 274, 1043, 1363 |
| BsgI | GTGCAG | 2 cut(s) | 693, 857 |
| BshFI | GGCC | 3 cut(s) | 13, 28, 790 |
| BshNI | GGYRCC | 1 cut(s) | 920 |
| BshTI | ACCGGT | 1 cut(s) | 1052 |
| BsiSI | CCGG | 4 cut(s) | 10, 243, 924, 1053 |
| BslFI | GGGAC | 1 cut(s) | 544 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 130, 319, 977, 1052 |
| BsmAI | GTCTC | 2 cut(s) | 515, 736 |
| BsmFI | GGGAC | 1 cut(s) | 544 |
| BsmI | GAATGC | 1 cut(s) | 723 |
| BsnI | GGCC | 3 cut(s) | 13, 28, 790 |
| Bsp1407I | TGTACA | 1 cut(s) | 907 |
| Bsp143I | GATC | 7 cut(s) | 3, 163, 475, 594, 880, 928, 1042 |
| Bsp19I | CCATGG | 1 cut(s) | 487 |
| BspACI | CCGC | 1 cut(s) | 1354 |
| BspANI | GGCC | 3 cut(s) | 13, 28, 790 |
| BspCNI | CTCAG | 3 cut(s) | 66, 835, 1330 |
| BspHI | TCATGA | 1 cut(s) | 181 |
| BspLI | GGNNCC | 4 cut(s) | 455, 849, 922, 969 |
| BspMI | ACCTGC | 1 cut(s) | 574 |
| BspPI | GGATC | 6 cut(s) | 171, 470, 602, 875, 936, 1037 |
| BspT107I | GGYRCC | 1 cut(s) | 920 |
| BspTI | CTTAAG | 1 cut(s) | 1025 |
| BsrDI | GCAATG | 1 cut(s) | 373 |
| BsrFI | RCCGGY | 2 cut(s) | 242, 1052 |
| BsrGI | TGTACA | 1 cut(s) | 907 |
| BsrI | ACTGG | 1 cut(s) | 324 |
| BssAI | RCCGGY | 2 cut(s) | 242, 1052 |
| BssECI | CCNNGG | 2 cut(s) | 487, 924 |
| BssMI | GATC | 7 cut(s) | 3, 163, 475, 594, 880, 928, 1042 |
| BssNAI | GTATAC | 1 cut(s) | 816 |
| BssSI | CACGAG | 1 cut(s) | 780 |
| BssT1I | CCWWGG | 1 cut(s) | 487 |
| Bst1107I | GTATAC | 1 cut(s) | 816 |
| Bst2BI | CACGAG | 1 cut(s) | 780 |
| Bst2UI | CCWGG | 2 cut(s) | 350, 592 |
| Bst4CI | ACNGT | 3 cut(s) | 872, 1069, 1117 |
| Bst6I | CTCTTC | 1 cut(s) | 405 |
| BstAFI | CTTAAG | 1 cut(s) | 1025 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 671 |
| BstAUI | TGTACA | 1 cut(s) | 907 |
| BstDEI | CTNAG | 4 cut(s) | 53, 600, 843, 1338 |
| BstDSI | CCRYGG | 1 cut(s) | 487 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 975 |
| BstF5I | GGATG | 2 cut(s) | 745, 1264 |
| BstKTI | GATC | 7 cut(s) | 6, 166, 478, 597, 883, 931, 1045 |
| BstMAI | GTCTC | 2 cut(s) | 515, 736 |
| BstMBI | GATC | 7 cut(s) | 3, 163, 475, 594, 880, 928, 1042 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 284, 575, 671, 944 |
| BstNI | CCWGG | 2 cut(s) | 350, 592 |
| BstSCI | CCNGG | 3 cut(s) | 348, 590, 923 |
| BstSFI | CTRYAG | 1 cut(s) | 1397 |
| BstV1I | GCAGC | 3 cut(s) | 274, 1043, 1363 |
| BstV2I | GAAGAC | 6 cut(s) | 149, 212, 296, 704, 999, 1170 |
| BstX2I | RGATCY | 2 cut(s) | 475, 928 |
| BstYI | RGATCY | 2 cut(s) | 475, 928 |
| BstZ17I | GTATAC | 1 cut(s) | 816 |
| BsuI | GTATCC | 1 cut(s) | 356 |
| BsuRI | GGCC | 3 cut(s) | 13, 28, 790 |
| BtgI | CCRYGG | 1 cut(s) | 487 |
| BtsCI | GGATG | 2 cut(s) | 745, 1264 |
| BtsIMutI | CAGTG | 3 cut(s) | 317, 877, 1335 |
| BveI | ACCTGC | 1 cut(s) | 574 |
| CaiI | CAGNNNCTG | 1 cut(s) | 479 |
| CciI | TCATGA | 1 cut(s) | 181 |
| Cfr10I | RCCGGY | 2 cut(s) | 242, 1052 |
| Cfr13I | GGNCC | 4 cut(s) | 310, 352, 491, 789 |
| CseI | GACGC | 1 cut(s) | 1282 |
| Csp6I | GTAC | 5 cut(s) | 204, 430, 482, 718, 908 |
| CspAI | ACCGGT | 1 cut(s) | 1052 |
| CviAII | CATG | 5 cut(s) | 182, 488, 605, 986, 1283 |
| CviQI | GTAC | 5 cut(s) | 204, 430, 482, 718, 908 |
| DdeI | CTNAG | 4 cut(s) | 53, 600, 843, 1338 |
| DpnI | GATC | 7 cut(s) | 5, 165, 477, 596, 882, 930, 1044 |
| DpnII | GATC | 7 cut(s) | 3, 163, 475, 594, 880, 928, 1042 |
| DraI | TTTAAA | 2 cut(s) | 555, 1366 |
| EaeI | YGGCCR | 1 cut(s) | 11 |
| Eam1104I | CTCTTC | 1 cut(s) | 405 |
| EarI | CTCTTC | 1 cut(s) | 405 |
| Eco130I | CCWWGG | 1 cut(s) | 487 |
| Eco147I | AGGCCT | 1 cut(s) | 28 |
| Eco47I | GGWCC | 3 cut(s) | 310, 352, 491 |
| Eco57I | CTGAAG | 4 cut(s) | 143, 206, 290, 771 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 975 |
| EcoO109I | RGGNCCY | 2 cut(s) | 310, 352 |
| EcoRII | CCWGG | 2 cut(s) | 348, 590 |
| EcoT14I | CCWWGG | 1 cut(s) | 487 |
| EcoT22I | ATGCAT | 2 cut(s) | 628, 1021 |
| ErhI | CCWWGG | 1 cut(s) | 487 |
| FaeI | CATG | 5 cut(s) | 185, 491, 608, 989, 1286 |
| FaqI | GGGAC | 1 cut(s) | 544 |
| FatI | CATG | 5 cut(s) | 181, 487, 604, 985, 1282 |
| FblI | GTMKAC | 1 cut(s) | 815 |
| Fnu4HI | GCNGC | 3 cut(s) | 288, 1032, 1352 |
| FokI | GGATG | 2 cut(s) | 732, 1251 |
| Fsp4HI | GCNGC | 3 cut(s) | 288, 1032, 1352 |
| FspBI | CTAG | 4 cut(s) | 399, 767, 932, 1301 |
| GluI | GCNGC | 3 cut(s) | 288, 1032, 1352 |
| HaeIII | GGCC | 3 cut(s) | 13, 28, 790 |
| HapII | CCGG | 4 cut(s) | 10, 243, 924, 1053 |
| HgaI | GACGC | 1 cut(s) | 1282 |
| Hin1II | CATG | 5 cut(s) | 185, 491, 608, 989, 1286 |
| HindIII | AAGCTT | 1 cut(s) | 1208 |
| HinfI | GANTC | 9 cut(s) | 39, 104, 146, 209, 226, 293, 335, 587, 1342 |
| HpaII | CCGG | 4 cut(s) | 10, 243, 924, 1053 |
| HphI | GGTGA | 4 cut(s) | 113, 155, 344, 386 |
| Hpy166II | GTNNAC | 3 cut(s) | 432, 816, 908 |
| Hpy188I | TCNGA | 8 cut(s) | 56, 121, 225, 495, 622, 844, 1272, 1347 |
| Hpy188III | TCNNGA | 9 cut(s) | 161, 182, 266, 308, 466, 503, 749, 782, 1160 |
| Hpy8I | GTNNAC | 3 cut(s) | 432, 816, 908 |
| HpyAV | CCTTC | 4 cut(s) | 53, 467, 971, 1310 |
| HpyCH4III | ACNGT | 3 cut(s) | 872, 1069, 1117 |
| HpyCH4IV | ACGT | 1 cut(s) | 1328 |
| HpyCH4V | TGCA | 8 cut(s) | 83, 366, 626, 674, 723, 838, 1019, 1351 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 284, 575, 671, 944 |
| HpyF3I | CTNAG | 4 cut(s) | 53, 600, 843, 1338 |
| HpySE526I | ACGT | 1 cut(s) | 1328 |
| Hsp92II | CATG | 5 cut(s) | 185, 491, 608, 989, 1286 |
| Kzo9I | GATC | 7 cut(s) | 3, 163, 475, 594, 880, 928, 1042 |
| Lsp1109I | GCAGC | 3 cut(s) | 274, 1043, 1363 |
| LweI | GCATC | 3 cut(s) | 613, 635, 1338 |
| MaeI | CTAG | 4 cut(s) | 399, 767, 932, 1301 |
| MaeII | ACGT | 1 cut(s) | 1328 |
| MaeIII | GTNAC | 3 cut(s) | 394, 872, 1278 |
| MalI | GATC | 7 cut(s) | 5, 165, 477, 596, 882, 930, 1044 |
| MboI | GATC | 7 cut(s) | 3, 163, 475, 594, 880, 928, 1042 |
| MfeI | CAATTG | 1 cut(s) | 234 |
| MflI | RGATCY | 2 cut(s) | 475, 928 |
| MluCI | AATT | 9 cut(s) | 16, 234, 256, 461, 635, 911, 1124, 1136, 1170 |
| MlyI | GAGTC | 1 cut(s) | 33 |
| MnlI | CCTC | 9 cut(s) | 39, 72, 134, 838, 894, 958, 1057, 1278, 1280 |
| Mph1103I | ATGCAT | 2 cut(s) | 628, 1021 |
| MroXI | GAANNNNTTC | 1 cut(s) | 981 |
| MseI | TTAA | 8 cut(s) | 389, 554, 693, 705, 762, 914, 1026, 1365 |
| MslI | CAYNNNNRTG | 1 cut(s) | 437 |
| MspA1I | CMGCKG | 2 cut(s) | 278, 1354 |
| MspCI | CTTAAG | 1 cut(s) | 1025 |
| MspI | CCGG | 4 cut(s) | 10, 243, 924, 1053 |
| MspR9I | CCNGG | 3 cut(s) | 350, 592, 925 |
| MunI | CAATTG | 1 cut(s) | 234 |
| Mva1269I | GAATGC | 1 cut(s) | 723 |
| MvaI | CCWGG | 2 cut(s) | 350, 592 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 284, 575, 671, 944 |
| NciI | CCSGG | 1 cut(s) | 925 |
| NcoI | CCATGG | 1 cut(s) | 487 |
| NdeII | GATC | 7 cut(s) | 3, 163, 475, 594, 880, 928, 1042 |
| NlaIII | CATG | 5 cut(s) | 185, 491, 608, 989, 1286 |
| NlaIV | GGNNCC | 4 cut(s) | 455, 849, 922, 969 |
| NmuCI | GTSAC | 2 cut(s) | 394, 872 |
| NsiI | ATGCAT | 2 cut(s) | 628, 1021 |
| OliI | CACNNNNGTG | 1 cut(s) | 437 |
| PagI | TCATGA | 1 cut(s) | 181 |
| PaqCI | CACCTGC | 1 cut(s) | 574 |
| PceI | AGGCCT | 1 cut(s) | 28 |
| PctI | GAATGC | 1 cut(s) | 723 |
| PdmI | GAANNNNTTC | 1 cut(s) | 981 |
| PfeI | GAWTC | 8 cut(s) | 104, 146, 209, 226, 293, 335, 587, 1342 |
| PfoI | TCCNGGA | 2 cut(s) | 348, 590 |
| PinAI | ACCGGT | 1 cut(s) | 1052 |
| PkrI | GCNGC | 3 cut(s) | 289, 1033, 1353 |
| PleI | GAGTC | 1 cut(s) | 33 |
| PpsI | GAGTC | 1 cut(s) | 33 |
| PpuMI | RGGWCCY | 2 cut(s) | 310, 352 |
| PsiI | TTATAA | 1 cut(s) | 1064 |
| Psp5II | RGGWCCY | 2 cut(s) | 310, 352 |
| Psp6I | CCWGG | 2 cut(s) | 348, 590 |
| PspGI | CCWGG | 2 cut(s) | 348, 590 |
| PspN4I | GGNNCC | 4 cut(s) | 455, 849, 922, 969 |
| PspPI | GGNCC | 4 cut(s) | 310, 352, 491, 789 |
| PspPPI | RGGWCCY | 2 cut(s) | 310, 352 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 49, 81 |
| PstNI | CAGNNNCTG | 1 cut(s) | 479 |
| PsuI | RGATCY | 2 cut(s) | 475, 928 |
| PvuII | CAGCTG | 1 cut(s) | 278 |
| RsaI | GTAC | 5 cut(s) | 205, 431, 483, 719, 909 |
| RsaNI | GTAC | 5 cut(s) | 204, 430, 482, 718, 908 |
| RseI | CAYNNNNRTG | 1 cut(s) | 437 |
| SaqAI | TTAA | 8 cut(s) | 389, 554, 693, 705, 762, 914, 1026, 1365 |
| SatI | GCNGC | 3 cut(s) | 288, 1032, 1352 |
| Sau3AI | GATC | 7 cut(s) | 3, 163, 475, 594, 880, 928, 1042 |
| Sau96I | GGNCC | 4 cut(s) | 310, 352, 491, 789 |
| ScaI | AGTACT | 2 cut(s) | 205, 719 |
| SchI | GAGTC | 1 cut(s) | 33 |
| ScrFI | CCNGG | 3 cut(s) | 350, 592, 925 |
| SfaNI | GCATC | 3 cut(s) | 613, 635, 1338 |
| SfcI | CTRYAG | 1 cut(s) | 1397 |
| SinI | GGWCC | 3 cut(s) | 310, 352, 491 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 437 |
| SmlI | CTYRAG | 2 cut(s) | 448, 1025 |
| SmoI | CTYRAG | 2 cut(s) | 448, 1025 |
| Sse9I | AATT | 9 cut(s) | 16, 234, 256, 461, 635, 911, 1124, 1136, 1170 |
| SseBI | AGGCCT | 1 cut(s) | 28 |
| SsiI | CCGC | 1 cut(s) | 1354 |
| SspI | AATATT | 1 cut(s) | 709 |
| SspMI | CTAG | 4 cut(s) | 399, 767, 932, 1301 |
| StuI | AGGCCT | 1 cut(s) | 28 |
| StyD4I | CCNGG | 3 cut(s) | 348, 590, 923 |
| StyI | CCWWGG | 1 cut(s) | 487 |
| TaaI | ACNGT | 3 cut(s) | 872, 1069, 1117 |
| TaiI | ACGT | 1 cut(s) | 1331 |
| TaqI | TCGA | 2 cut(s) | 629, 862 |
| TaqII | GACCGA | 1 cut(s) | 1182 |
| TasI | AATT | 9 cut(s) | 16, 234, 256, 461, 635, 911, 1124, 1136, 1170 |
| TatI | WGTACW | 4 cut(s) | 203, 481, 717, 907 |
| TfiI | GAWTC | 8 cut(s) | 104, 146, 209, 226, 293, 335, 587, 1342 |
| Tru1I | TTAA | 8 cut(s) | 389, 554, 693, 705, 762, 914, 1026, 1365 |
| Tru9I | TTAA | 8 cut(s) | 389, 554, 693, 705, 762, 914, 1026, 1365 |
| TscAI | CASTG | 3 cut(s) | 324, 877, 1342 |
| TseFI | GTSAC | 2 cut(s) | 394, 872 |
| TseI | GCWGC | 3 cut(s) | 287, 1031, 1351 |
| Tsp45I | GTSAC | 2 cut(s) | 394, 872 |
| TspDTI | ATGAA | 8 cut(s) | 35, 170, 624, 728, 957, 974, 1254, 1329 |
| TspGWI | ACGGA | 2 cut(s) | 977, 1142 |
| TspRI | CASTG | 3 cut(s) | 324, 877, 1342 |
| Vha464I | CTTAAG | 1 cut(s) | 1025 |
| VpaK11BI | GGWCC | 3 cut(s) | 310, 352, 491 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 975 |
| XapI | RAATTY | 2 cut(s) | 16, 635 |
| XmiI | GTMKAC | 1 cut(s) | 815 |
| XmnI | GAANNNNTTC | 1 cut(s) | 981 |
| XspI | CTAG | 4 cut(s) | 399, 767, 932, 1301 |
| ZrmI | AGTACT | 2 cut(s) | 205, 719 |
| Zsp2I | ATGCAT | 2 cut(s) | 628, 1021 |