Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 451, 486 |
| AciI | CCGC | 1 cut(s) | 239 |
| AclWI | GGATC | 3 cut(s) | 196, 295, 308 |
| AcsI | RAATTY | 1 cut(s) | 353 |
| AcuI | CTGAAG | 2 cut(s) | 350, 444 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 408 |
| AflIII | ACRYGT | 1 cut(s) | 469 |
| AgsI | TTSAA | 1 cut(s) | 598 |
| AjnI | CCWGG | 1 cut(s) | 251 |
| AluBI | AGCT | 3 cut(s) | 169, 189, 542 |
| AluI | AGCT | 3 cut(s) | 169, 189, 542 |
| Alw21I | GWGCWC | 1 cut(s) | 570 |
| Alw26I | GTCTC | 1 cut(s) | 582 |
| AlwI | GGATC | 3 cut(s) | 196, 295, 308 |
| ApoI | RAATTY | 1 cut(s) | 353 |
| AspS9I | GGNCC | 1 cut(s) | 364 |
| AsuHPI | GGTGA | 2 cut(s) | 235, 532 |
| AvaII | GGWCC | 1 cut(s) | 364 |
| BamHI | GGATCC | 1 cut(s) | 300 |
| BbsI | GAAGAC | 1 cut(s) | 472 |
| Bbv12I | GWGCWC | 1 cut(s) | 570 |
| BccI | CCATC | 3 cut(s) | 46, 152, 260 |
| BciT130I | CCWGG | 1 cut(s) | 253 |
| BcoDI | GTCTC | 1 cut(s) | 582 |
| BfaI | CTAG | 2 cut(s) | 89, 384 |
| BisI | GCNGC | 1 cut(s) | 240 |
| BlsI | GCNGC | 1 cut(s) | 241 |
| Bme1390I | CCNGG | 1 cut(s) | 253 |
| Bme18I | GGWCC | 1 cut(s) | 364 |
| BmgT120I | GGNCC | 1 cut(s) | 364 |
| BmiI | GGNNCC | 1 cut(s) | 302 |
| BmrFI | CCNGG | 1 cut(s) | 253 |
| BmsI | GCATC | 2 cut(s) | 75, 364 |
| BpiI | GAAGAC | 1 cut(s) | 472 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 155, 187 |
| BpmI | CTGGAG | 1 cut(s) | 528 |
| BsaI | GGTCTC | 1 cut(s) | 582 |
| BsaJI | CCNNGG | 1 cut(s) | 583 |
| BsaWI | WCCGGW | 1 cut(s) | 496 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 408 |
| Bse1I | ACTGG | 1 cut(s) | 494 |
| Bse3DI | GCAATG | 2 cut(s) | 246, 352 |
| BseBI | CCWGG | 1 cut(s) | 253 |
| BseDI | CCNNGG | 1 cut(s) | 583 |
| BseGI | GGATG | 1 cut(s) | 578 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 408 |
| BseMI | GCAATG | 2 cut(s) | 246, 352 |
| BseNI | ACTGG | 1 cut(s) | 494 |
| BsiHKAI | GWGCWC | 1 cut(s) | 570 |
| BsiSI | CCGG | 1 cut(s) | 497 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 408 |
| BsmAI | GTCTC | 1 cut(s) | 582 |
| Bso31I | GGTCTC | 1 cut(s) | 582 |
| Bsp1286I | GDGCHC | 1 cut(s) | 570 |
| Bsp143I | GATC | 3 cut(s) | 201, 300, 478 |
| BspACI | CCGC | 1 cut(s) | 239 |
| BspLI | GGNNCC | 1 cut(s) | 302 |
| BspPI | GGATC | 3 cut(s) | 196, 295, 308 |
| BspQI | GCTCTTC | 1 cut(s) | 2 |
| BspTNI | GGTCTC | 1 cut(s) | 582 |
| BsrDI | GCAATG | 2 cut(s) | 246, 352 |
| BsrI | ACTGG | 1 cut(s) | 494 |
| BssECI | CCNNGG | 1 cut(s) | 583 |
| BssMI | GATC | 3 cut(s) | 201, 300, 478 |
| BssNAI | GTATAC | 2 cut(s) | 452, 487 |
| BssT1I | CCWWGG | 1 cut(s) | 583 |
| Bst1107I | GTATAC | 2 cut(s) | 452, 487 |
| Bst2UI | CCWGG | 1 cut(s) | 253 |
| Bst6I | CTCTTC | 1 cut(s) | 2 |
| BstC8I | GCNNGC | 2 cut(s) | 64, 244 |
| BstDEI | CTNAG | 4 cut(s) | 119, 198, 206, 557 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 406 |
| BstF5I | GGATG | 1 cut(s) | 578 |
| BstKTI | GATC | 3 cut(s) | 204, 303, 481 |
| BstMAI | GTCTC | 1 cut(s) | 582 |
| BstMBI | GATC | 3 cut(s) | 201, 300, 478 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 149, 248 |
| BstNI | CCWGG | 1 cut(s) | 253 |
| BstNSI | RCATGY | 2 cut(s) | 260, 473 |
| BstSCI | CCNGG | 1 cut(s) | 251 |
| BstV2I | GAAGAC | 1 cut(s) | 472 |
| BstX2I | RGATCY | 2 cut(s) | 201, 300 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 52 |
| BstYI | RGATCY | 2 cut(s) | 201, 300 |
| BstZ17I | GTATAC | 2 cut(s) | 452, 487 |
| BtsCI | GGATG | 1 cut(s) | 578 |
| BtsI | GCAGTG | 1 cut(s) | 19 |
| BtsIMutI | CAGTG | 1 cut(s) | 19 |
| Cac8I | GCNNGC | 2 cut(s) | 64, 244 |
| Cfr13I | GGNCC | 1 cut(s) | 364 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 278, 313 |
| CviAII | CATG | 5 cut(s) | 46, 95, 257, 470, 563 |
| DdeI | CTNAG | 4 cut(s) | 119, 198, 206, 557 |
| DpnI | GATC | 3 cut(s) | 203, 302, 480 |
| DpnII | GATC | 3 cut(s) | 201, 300, 478 |
| Eam1104I | CTCTTC | 1 cut(s) | 2 |
| EarI | CTCTTC | 1 cut(s) | 2 |
| Eco130I | CCWWGG | 1 cut(s) | 583 |
| Eco31I | GGTCTC | 1 cut(s) | 582 |
| Eco47I | GGWCC | 1 cut(s) | 364 |
| Eco57I | CTGAAG | 2 cut(s) | 350, 444 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 406 |
| EcoRII | CCWGG | 1 cut(s) | 251 |
| EcoT14I | CCWWGG | 1 cut(s) | 583 |
| ErhI | CCWWGG | 1 cut(s) | 583 |
| FaeI | CATG | 5 cut(s) | 49, 98, 260, 473, 566 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 386, 418 |
| FatI | CATG | 5 cut(s) | 45, 94, 256, 469, 562 |
| FblI | GTMKAC | 2 cut(s) | 451, 486 |
| Fnu4HI | GCNGC | 1 cut(s) | 240 |
| FokI | GGATG | 1 cut(s) | 565 |
| Fsp4HI | GCNGC | 1 cut(s) | 240 |
| FspBI | CTAG | 2 cut(s) | 89, 384 |
| GluI | GCNGC | 1 cut(s) | 240 |
| GsuI | CTGGAG | 1 cut(s) | 528 |
| HapII | CCGG | 1 cut(s) | 497 |
| Hin1II | CATG | 5 cut(s) | 49, 98, 260, 473, 566 |
| HincII | GTYRAC | 1 cut(s) | 436 |
| HindII | GTYRAC | 1 cut(s) | 436 |
| HinfI | GANTC | 1 cut(s) | 226 |
| HpaII | CCGG | 1 cut(s) | 497 |
| HphI | GGTGA | 2 cut(s) | 235, 532 |
| Hpy166II | GTNNAC | 4 cut(s) | 314, 436, 452, 487 |
| Hpy188I | TCNGA | 1 cut(s) | 364 |
| Hpy188III | TCNNGA | 2 cut(s) | 328, 545 |
| Hpy8I | GTNNAC | 4 cut(s) | 314, 436, 452, 487 |
| HpyAV | CCTTC | 1 cut(s) | 388 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 49, 345 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 149, 248 |
| HpyF3I | CTNAG | 4 cut(s) | 119, 198, 206, 557 |
| Hsp92II | CATG | 5 cut(s) | 49, 98, 260, 473, 566 |
| Kzo9I | GATC | 3 cut(s) | 201, 300, 478 |
| LguI | GCTCTTC | 1 cut(s) | 2 |
| LmnI | GCTCC | 1 cut(s) | 547 |
| LweI | GCATC | 2 cut(s) | 75, 364 |
| MaeI | CTAG | 2 cut(s) | 89, 384 |
| MaeIII | GTNAC | 2 cut(s) | 223, 472 |
| MalI | GATC | 3 cut(s) | 203, 302, 480 |
| MboI | GATC | 3 cut(s) | 201, 300, 478 |
| MboII | GAAGA | 3 cut(s) | 19, 437, 477 |
| MflI | RGATCY | 2 cut(s) | 201, 300 |
| MhlI | GDGCHC | 1 cut(s) | 570 |
| MluCI | AATT | 3 cut(s) | 183, 340, 353 |
| MlyI | GAGTC | 1 cut(s) | 220 |
| MnlI | CCTC | 5 cut(s) | 126, 315, 377, 402, 612 |
| MseI | TTAA | 1 cut(s) | 78 |
| MslI | CAYNNNNRTG | 2 cut(s) | 50, 386 |
| MspI | CCGG | 1 cut(s) | 497 |
| MspR9I | CCNGG | 1 cut(s) | 253 |
| MvaI | CCWGG | 1 cut(s) | 253 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 149, 248 |
| NdeII | GATC | 3 cut(s) | 201, 300, 478 |
| NlaIII | CATG | 5 cut(s) | 49, 98, 260, 473, 566 |
| NlaIV | GGNNCC | 1 cut(s) | 302 |
| NmuCI | GTSAC | 1 cut(s) | 223 |
| NspI | RCATGY | 2 cut(s) | 260, 473 |
| PciI | ACATGT | 1 cut(s) | 469 |
| PciSI | GCTCTTC | 1 cut(s) | 2 |
| PkrI | GCNGC | 1 cut(s) | 241 |
| PleI | GAGTC | 1 cut(s) | 220 |
| PpsI | GAGTC | 1 cut(s) | 220 |
| PscI | ACATGT | 1 cut(s) | 469 |
| Psp6I | CCWGG | 1 cut(s) | 251 |
| PspGI | CCWGG | 1 cut(s) | 251 |
| PspN4I | GGNNCC | 1 cut(s) | 302 |
| PspPI | GGNCC | 1 cut(s) | 364 |
| PsuI | RGATCY | 2 cut(s) | 201, 300 |
| RseI | CAYNNNNRTG | 2 cut(s) | 50, 386 |
| SapI | GCTCTTC | 1 cut(s) | 2 |
| SaqAI | TTAA | 1 cut(s) | 78 |
| SatI | GCNGC | 1 cut(s) | 240 |
| Sau3AI | GATC | 3 cut(s) | 201, 300, 478 |
| Sau96I | GGNCC | 1 cut(s) | 364 |
| SchI | GAGTC | 1 cut(s) | 220 |
| ScrFI | CCNGG | 1 cut(s) | 253 |
| SduI | GDGCHC | 1 cut(s) | 570 |
| SetI | ASST | 6 cut(s) | 118, 171, 191, 225, 369, 544 |
| SfaNI | GCATC | 2 cut(s) | 75, 364 |
| SinI | GGWCC | 1 cut(s) | 364 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 50, 386 |
| Sse9I | AATT | 3 cut(s) | 183, 340, 353 |
| SsiI | CCGC | 1 cut(s) | 239 |
| SspMI | CTAG | 2 cut(s) | 89, 384 |
| StyD4I | CCNGG | 1 cut(s) | 251 |
| StyI | CCWWGG | 1 cut(s) | 583 |
| TaqI | TCGA | 1 cut(s) | 481 |
| TasI | AATT | 3 cut(s) | 183, 340, 353 |
| TauI | GCSGC | 1 cut(s) | 242 |
| Tru1I | TTAA | 1 cut(s) | 78 |
| Tru9I | TTAA | 1 cut(s) | 78 |
| TscAI | CASTG | 1 cut(s) | 19 |
| TseFI | GTSAC | 1 cut(s) | 223 |
| Tsp45I | GTSAC | 1 cut(s) | 223 |
| TspRI | CASTG | 1 cut(s) | 19 |
| VpaK11BI | GGWCC | 1 cut(s) | 364 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 406 |
| XapI | RAATTY | 1 cut(s) | 353 |
| XceI | RCATGY | 2 cut(s) | 260, 473 |
| XmiI | GTMKAC | 2 cut(s) | 451, 486 |
| XspI | CTAG | 2 cut(s) | 89, 384 |