ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 139 |
| AccIII | TCCGGA | 2 cut(s) | 574, 670 |
| AclWI | GGATC | 3 cut(s) | 175, 479, 566 |
| AcoI | YGGCCR | 1 cut(s) | 141 |
| AfaI | GTAC | 2 cut(s) | 506, 713 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 139, 150, 396, 448 |
| AflII | CTTAAG | 1 cut(s) | 661 |
| AgsI | TTSAA | 3 cut(s) | 68, 431, 635 |
| AjnI | CCWGG | 1 cut(s) | 379 |
| AluBI | AGCT | 2 cut(s) | 405, 660 |
| AluI | AGCT | 2 cut(s) | 405, 660 |
| Alw26I | GTCTC | 3 cut(s) | 443, 775, 786 |
| AlwI | GGATC | 3 cut(s) | 175, 479, 566 |
| Aor13HI | TCCGGA | 2 cut(s) | 574, 670 |
| AoxI | GGCC | 1 cut(s) | 141 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 222, 254 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 615, 639 |
| AsuHPI | GGTGA | 2 cut(s) | 170, 395 |
| BccI | CCATC | 1 cut(s) | 586 |
| BciT130I | CCWGG | 1 cut(s) | 381 |
| BclI | TGATCA | 1 cut(s) | 51 |
| BcoDI | GTCTC | 3 cut(s) | 443, 775, 786 |
| BfaI | CTAG | 4 cut(s) | 233, 305, 605, 741 |
| BfrI | CTTAAG | 1 cut(s) | 661 |
| Bme1390I | CCNGG | 1 cut(s) | 381 |
| BmiI | GGNNCC | 1 cut(s) | 823 |
| BmrFI | CCNGG | 1 cut(s) | 381 |
| BmsI | GCATC | 3 cut(s) | 127, 310, 385 |
| BpmI | CTGGAG | 1 cut(s) | 563 |
| Bsa29I | ATCGAT | 1 cut(s) | 570 |
| BsaI | GGTCTC | 2 cut(s) | 443, 775 |
| BsaJI | CCNNGG | 1 cut(s) | 488 |
| BsaWI | WCCGGW | 2 cut(s) | 574, 670 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 536, 566 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 139, 150, 396, 448 |
| Bse1I | ACTGG | 1 cut(s) | 133 |
| Bse3DI | GCAATG | 1 cut(s) | 463 |
| BseAI | TCCGGA | 2 cut(s) | 574, 670 |
| BseBI | CCWGG | 1 cut(s) | 381 |
| BseCI | ATCGAT | 1 cut(s) | 570 |
| BseDI | CCNNGG | 1 cut(s) | 488 |
| BseGI | GGATG | 2 cut(s) | 376, 597 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 139, 150, 396, 448 |
| BseMI | GCAATG | 1 cut(s) | 463 |
| BseMII | CTCAG | 3 cut(s) | 310, 670, 779 |
| BseNI | ACTGG | 1 cut(s) | 133 |
| BseRI | GAGGAG | 1 cut(s) | 415 |
| BsgI | GTGCAG | 1 cut(s) | 54 |
| BshFI | GGCC | 1 cut(s) | 143 |
| BshVI | ATCGAT | 1 cut(s) | 570 |
| BsiSI | CCGG | 2 cut(s) | 575, 671 |
| BslFI | GGGAC | 1 cut(s) | 295 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 139, 150, 396, 448 |
| BsmAI | GTCTC | 3 cut(s) | 443, 775, 786 |
| BsmFI | GGGAC | 1 cut(s) | 295 |
| BsnI | GGCC | 1 cut(s) | 143 |
| Bso31I | GGTCTC | 2 cut(s) | 443, 775 |
| Bsp13I | TCCGGA | 2 cut(s) | 574, 670 |
| Bsp143I | GATC | 5 cut(s) | 51, 180, 484, 567, 571 |
| Bsp19I | CCATGG | 1 cut(s) | 488 |
| BspANI | GGCC | 1 cut(s) | 143 |
| BspCNI | CTCAG | 3 cut(s) | 309, 669, 778 |
| BspDI | ATCGAT | 1 cut(s) | 570 |
| BspEI | TCCGGA | 2 cut(s) | 574, 670 |
| BspHI | TCATGA | 1 cut(s) | 121 |
| BspLI | GGNNCC | 1 cut(s) | 823 |
| BspPI | GGATC | 3 cut(s) | 175, 479, 566 |
| BspTI | CTTAAG | 1 cut(s) | 661 |
| BspTNI | GGTCTC | 2 cut(s) | 443, 775 |
| BsrDI | GCAATG | 1 cut(s) | 463 |
| BsrI | ACTGG | 1 cut(s) | 133 |
| BssECI | CCNNGG | 1 cut(s) | 488 |
| BssMI | GATC | 5 cut(s) | 51, 180, 484, 567, 571 |
| BssT1I | CCWWGG | 1 cut(s) | 488 |
| Bst2UI | CCWGG | 1 cut(s) | 381 |
| Bst4CI | ACNGT | 2 cut(s) | 282, 504 |
| Bst6I | CTCTTC | 1 cut(s) | 216 |
| BstAFI | CTTAAG | 1 cut(s) | 661 |
| BstC8I | GCNNGC | 3 cut(s) | 37, 287, 366 |
| BstDEI | CTNAG | 5 cut(s) | 26, 296, 317, 656, 765 |
| BstDSI | CCRYGG | 1 cut(s) | 488 |
| BstF5I | GGATG | 2 cut(s) | 376, 597 |
| BstKTI | GATC | 5 cut(s) | 54, 183, 487, 570, 574 |
| BstMAI | GTCTC | 3 cut(s) | 443, 775, 786 |
| BstMBI | GATC | 5 cut(s) | 51, 180, 484, 567, 571 |
| BstNI | CCWGG | 1 cut(s) | 381 |
| BstNSI | RCATGY | 2 cut(s) | 368, 372 |
| BstSCI | CCNGG | 1 cut(s) | 379 |
| BstX2I | RGATCY | 1 cut(s) | 180 |
| BstYI | RGATCY | 1 cut(s) | 180 |
| Bsu15I | ATCGAT | 1 cut(s) | 570 |
| BsuRI | GGCC | 1 cut(s) | 143 |
| BsuTUI | ATCGAT | 1 cut(s) | 570 |
| BtgI | CCRYGG | 1 cut(s) | 488 |
| BtsCI | GGATG | 2 cut(s) | 376, 597 |
| BtsIMutI | CAGTG | 3 cut(s) | 140, 287, 531 |
| Cac8I | GCNNGC | 3 cut(s) | 37, 287, 366 |
| CciI | TCATGA | 1 cut(s) | 121 |
| ClaI | ATCGAT | 1 cut(s) | 570 |
| Csp6I | GTAC | 2 cut(s) | 505, 712 |
| CviAII | CATG | 8 cut(s) | 122, 195, 247, 365, 369, 489, 620, 734 |
| CviJI | RGCY | 8 cut(s) | 143, 405, 493, 541, 604, 660, 740, 824 |
| CviKI_1 | RGCY | 8 cut(s) | 143, 405, 493, 541, 604, 660, 740, 824 |
| CviQI | GTAC | 2 cut(s) | 505, 712 |
| DdeI | CTNAG | 5 cut(s) | 26, 296, 317, 656, 765 |
| DpnI | GATC | 5 cut(s) | 53, 182, 486, 569, 573 |
| DpnII | GATC | 5 cut(s) | 51, 180, 484, 567, 571 |
| DraI | TTTAAA | 1 cut(s) | 330 |
| EaeI | YGGCCR | 1 cut(s) | 141 |
| Eam1104I | CTCTTC | 1 cut(s) | 216 |
| EarI | CTCTTC | 1 cut(s) | 216 |
| Eco130I | CCWWGG | 1 cut(s) | 488 |
| Eco31I | GGTCTC | 2 cut(s) | 443, 775 |
| EcoRII | CCWGG | 1 cut(s) | 379 |
| EcoT14I | CCWWGG | 1 cut(s) | 488 |
| EcoT22I | ATGCAT | 2 cut(s) | 366, 370 |
| ErhI | CCWWGG | 1 cut(s) | 488 |
| FaeI | CATG | 8 cut(s) | 125, 198, 250, 368, 372, 492, 623, 737 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 736, 768 |
| FaqI | GGGAC | 1 cut(s) | 295 |
| FatI | CATG | 8 cut(s) | 121, 194, 246, 364, 368, 488, 619, 733 |
| FbaI | TGATCA | 1 cut(s) | 51 |
| FokI | GGATG | 2 cut(s) | 363, 604 |
| FspBI | CTAG | 4 cut(s) | 233, 305, 605, 741 |
| GsuI | CTGGAG | 1 cut(s) | 563 |
| HaeIII | GGCC | 1 cut(s) | 143 |
| HapII | CCGG | 2 cut(s) | 575, 671 |
| Hin1II | CATG | 8 cut(s) | 125, 198, 250, 368, 372, 492, 623, 737 |
| HinfI | GANTC | 5 cut(s) | 308, 386, 578, 640, 667 |
| HpaII | CCGG | 2 cut(s) | 575, 671 |
| HphI | GGTGA | 2 cut(s) | 170, 395 |
| Hpy166II | GTNNAC | 2 cut(s) | 230, 293 |
| Hpy188III | TCNNGA | 6 cut(s) | 122, 305, 428, 575, 671, 721 |
| Hpy8I | GTNNAC | 2 cut(s) | 230, 293 |
| HpyAV | CCTTC | 6 cut(s) | 7, 168, 323, 412, 738, 771 |
| HpyCH4III | ACNGT | 2 cut(s) | 282, 504 |
| HpyCH4IV | ACGT | 1 cut(s) | 776 |
| HpyCH4V | TGCA | 7 cut(s) | 35, 118, 130, 364, 368, 376, 787 |
| HpyF3I | CTNAG | 5 cut(s) | 26, 296, 317, 656, 765 |
| HpySE526I | ACGT | 1 cut(s) | 776 |
| Hsp92II | CATG | 8 cut(s) | 125, 198, 250, 368, 372, 492, 623, 737 |
| Kpn2I | TCCGGA | 2 cut(s) | 574, 670 |
| Ksp22I | TGATCA | 1 cut(s) | 51 |
| Kzo9I | GATC | 5 cut(s) | 51, 180, 484, 567, 571 |
| LmnI | GCTCC | 2 cut(s) | 402, 821 |
| LweI | GCATC | 3 cut(s) | 127, 310, 385 |
| MaeI | CTAG | 4 cut(s) | 233, 305, 605, 741 |
| MaeII | ACGT | 1 cut(s) | 776 |
| MaeIII | GTNAC | 3 cut(s) | 102, 242, 383 |
| MalI | GATC | 5 cut(s) | 53, 182, 486, 569, 573 |
| MboI | GATC | 5 cut(s) | 51, 180, 484, 567, 571 |
| MboII | GAAGA | 6 cut(s) | 16, 190, 233, 620, 820, 823 |
| MflI | RGATCY | 1 cut(s) | 180 |
| MluCI | AATT | 1 cut(s) | 7 |
| MlyI | GAGTC | 3 cut(s) | 317, 380, 572 |
| MnlI | CCTC | 6 cut(s) | 217, 393, 538, 622, 663, 667 |
| Mph1103I | ATGCAT | 2 cut(s) | 366, 370 |
| MroI | TCCGGA | 2 cut(s) | 574, 670 |
| MroXI | GAANNNNTTC | 2 cut(s) | 615, 639 |
| MseI | TTAA | 4 cut(s) | 258, 329, 407, 662 |
| MslI | CAYNNNNRTG | 3 cut(s) | 369, 381, 624 |
| MspCI | CTTAAG | 1 cut(s) | 661 |
| MspI | CCGG | 2 cut(s) | 575, 671 |
| MspR9I | CCNGG | 1 cut(s) | 381 |
| MvaI | CCWGG | 1 cut(s) | 381 |
| NcoI | CCATGG | 1 cut(s) | 488 |
| NdeII | GATC | 5 cut(s) | 51, 180, 484, 567, 571 |
| NlaIII | CATG | 8 cut(s) | 125, 198, 250, 368, 372, 492, 623, 737 |
| NlaIV | GGNNCC | 1 cut(s) | 823 |
| NmeAIII | GCCGAG | 1 cut(s) | 169 |
| NmuCI | GTSAC | 1 cut(s) | 383 |
| NsiI | ATGCAT | 2 cut(s) | 366, 370 |
| NspI | RCATGY | 2 cut(s) | 368, 372 |
| PaeI | GCATGC | 1 cut(s) | 368 |
| PagI | TCATGA | 1 cut(s) | 121 |
| PdmI | GAANNNNTTC | 2 cut(s) | 615, 639 |
| PfeI | GAWTC | 2 cut(s) | 640, 667 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 139 |
| PleI | GAGTC | 3 cut(s) | 316, 380, 572 |
| PpsI | GAGTC | 3 cut(s) | 316, 380, 572 |
| Psp6I | CCWGG | 1 cut(s) | 379 |
| PspGI | CCWGG | 1 cut(s) | 379 |
| PspN4I | GGNNCC | 1 cut(s) | 823 |
| PsuI | RGATCY | 1 cut(s) | 180 |
| RsaI | GTAC | 2 cut(s) | 506, 713 |
| RsaNI | GTAC | 2 cut(s) | 505, 712 |
| RseI | CAYNNNNRTG | 3 cut(s) | 369, 381, 624 |
| SaqAI | TTAA | 4 cut(s) | 258, 329, 407, 662 |
| Sau3AI | GATC | 5 cut(s) | 51, 180, 484, 567, 571 |
| SchI | GAGTC | 3 cut(s) | 317, 380, 572 |
| ScrFI | CCNGG | 1 cut(s) | 381 |
| SetI | ASST | 8 cut(s) | 385, 407, 453, 633, 662, 749, 771, 779 |
| SfaNI | GCATC | 3 cut(s) | 127, 310, 385 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 369, 381, 624 |
| SmlI | CTYRAG | 1 cut(s) | 661 |
| SmoI | CTYRAG | 1 cut(s) | 661 |
| SphI | GCATGC | 1 cut(s) | 368 |
| Sse9I | AATT | 1 cut(s) | 7 |
| SspMI | CTAG | 4 cut(s) | 233, 305, 605, 741 |
| StyD4I | CCNGG | 1 cut(s) | 379 |
| StyI | CCWWGG | 1 cut(s) | 488 |
| TaaI | ACNGT | 2 cut(s) | 282, 504 |
| TaiI | ACGT | 1 cut(s) | 779 |
| TaqI | TCGA | 2 cut(s) | 99, 570 |
| TasI | AATT | 1 cut(s) | 7 |
| TatI | WGTACW | 1 cut(s) | 711 |
| TfiI | GAWTC | 2 cut(s) | 640, 667 |
| Tru1I | TTAA | 4 cut(s) | 258, 329, 407, 662 |
| Tru9I | TTAA | 4 cut(s) | 258, 329, 407, 662 |
| TscAI | CASTG | 3 cut(s) | 140, 287, 531 |
| TseFI | GTSAC | 1 cut(s) | 383 |
| Tsp45I | GTSAC | 1 cut(s) | 383 |
| TspDTI | ATGAA | 4 cut(s) | 17, 138, 425, 608 |
| TspGWI | ACGGA | 1 cut(s) | 431 |
| TspRI | CASTG | 3 cut(s) | 140, 287, 531 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 139 |
| Vha464I | CTTAAG | 1 cut(s) | 661 |
| XbaI | TCTAGA | 1 cut(s) | 304 |
| XceI | RCATGY | 2 cut(s) | 368, 372 |
| XmnI | GAANNNNTTC | 2 cut(s) | 615, 639 |
| XspI | CTAG | 4 cut(s) | 233, 305, 605, 741 |
| Zsp2I | ATGCAT | 2 cut(s) | 366, 370 |